Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00785 and CCNA_03938 are separated by 183 nucleotides CCNA_03938 and CCNA_00787 are separated by 111 nucleotides CCNA_00787 and CCNA_00788 are separated by 133 nucleotides
CCNA_00785: CCNA_00785 - tRNA methyltransferase/FAD-dependent oxidoreductase MnmC, at 848,157 to 849,932
_00785
CCNA_03938: CCNA_03938 - hypothetical protein, at 850,116 to 850,442
_03938
CCNA_00787: CCNA_00787 - chemotaxis motA protein, at 850,554 to 851,420
_00787
CCNA_00788: CCNA_00788 - transporter, major facilitator superfamily, at 851,554 to 852,870
_00788
Position (kb) 850
851
852 Strain fitness (log2 ratio) -2
-1
0
1
2 at 849.602 kb on + strand, within CCNA_00785 at 849.610 kb on - strand, within CCNA_00785 at 849.610 kb on - strand, within CCNA_00785 at 849.649 kb on + strand, within CCNA_00785 at 849.677 kb on - strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.737 kb on - strand, within CCNA_00785 at 849.742 kb on + strand, within CCNA_00785 at 849.761 kb on + strand at 849.761 kb on + strand at 849.761 kb on + strand at 849.776 kb on + strand at 849.794 kb on - strand at 849.858 kb on - strand at 849.867 kb on + strand at 849.870 kb on - strand at 849.884 kb on - strand at 849.887 kb on + strand at 849.888 kb on + strand at 849.895 kb on - strand at 849.916 kb on - strand at 849.943 kb on - strand at 849.947 kb on + strand at 849.948 kb on + strand at 849.956 kb on - strand at 849.956 kb on - strand at 849.958 kb on + strand at 849.981 kb on + strand at 850.021 kb on + strand at 850.037 kb on + strand at 850.037 kb on + strand at 850.037 kb on + strand at 850.037 kb on + strand at 850.037 kb on + strand at 850.045 kb on - strand at 850.047 kb on + strand at 850.051 kb on - strand at 850.054 kb on + strand at 850.054 kb on + strand at 850.088 kb on - strand at 850.088 kb on - strand at 850.126 kb on + strand at 850.126 kb on + strand at 850.134 kb on - strand at 850.134 kb on - strand at 850.134 kb on - strand at 850.134 kb on - strand at 850.139 kb on - strand at 850.149 kb on - strand, within CCNA_03938 at 850.361 kb on + strand, within CCNA_03938 at 850.408 kb on + strand, within CCNA_03938 at 850.430 kb on + strand at 850.438 kb on - strand at 850.438 kb on - strand at 850.446 kb on - strand at 850.541 kb on - strand at 850.546 kb on + strand at 850.546 kb on + strand at 850.546 kb on + strand at 850.554 kb on - strand at 850.554 kb on - strand at 850.554 kb on - strand at 850.605 kb on - strand at 850.612 kb on + strand at 850.647 kb on + strand, within CCNA_00787 at 850.677 kb on + strand, within CCNA_00787 at 850.685 kb on - strand, within CCNA_00787 at 850.691 kb on + strand, within CCNA_00787 at 850.704 kb on - strand, within CCNA_00787 at 850.732 kb on - strand, within CCNA_00787 at 850.750 kb on + strand, within CCNA_00787 at 850.755 kb on + strand, within CCNA_00787 at 850.755 kb on + strand, within CCNA_00787 at 850.763 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.769 kb on - strand, within CCNA_00787 at 850.773 kb on + strand, within CCNA_00787 at 850.780 kb on + strand, within CCNA_00787 at 850.788 kb on - strand, within CCNA_00787 at 850.802 kb on - strand, within CCNA_00787 at 850.824 kb on - strand, within CCNA_00787 at 850.826 kb on - strand, within CCNA_00787 at 850.887 kb on + strand, within CCNA_00787 at 850.895 kb on - strand, within CCNA_00787 at 850.895 kb on - strand, within CCNA_00787 at 850.895 kb on - strand, within CCNA_00787 at 850.924 kb on - strand, within CCNA_00787 at 850.933 kb on + strand, within CCNA_00787 at 850.936 kb on - strand, within CCNA_00787 at 850.991 kb on + strand, within CCNA_00787 at 850.999 kb on + strand, within CCNA_00787 at 850.999 kb on - strand, within CCNA_00787 at 851.014 kb on + strand, within CCNA_00787 at 851.014 kb on - strand, within CCNA_00787 at 851.019 kb on + strand, within CCNA_00787 at 851.022 kb on + strand, within CCNA_00787 at 851.045 kb on - strand, within CCNA_00787 at 851.069 kb on + strand, within CCNA_00787 at 851.069 kb on + strand, within CCNA_00787 at 851.076 kb on - strand, within CCNA_00787 at 851.077 kb on - strand, within CCNA_00787 at 851.077 kb on - strand, within CCNA_00787 at 851.077 kb on - strand, within CCNA_00787 at 851.077 kb on - strand, within CCNA_00787 at 851.145 kb on - strand, within CCNA_00787 at 851.145 kb on - strand, within CCNA_00787 at 851.146 kb on - strand, within CCNA_00787 at 851.152 kb on + strand, within CCNA_00787 at 851.191 kb on - strand, within CCNA_00787 at 851.191 kb on - strand, within CCNA_00787 at 851.193 kb on + strand, within CCNA_00787 at 851.216 kb on - strand, within CCNA_00787 at 851.237 kb on + strand, within CCNA_00787 at 851.251 kb on - strand, within CCNA_00787 at 851.256 kb on - strand, within CCNA_00787 at 851.261 kb on - strand, within CCNA_00787 at 851.264 kb on + strand, within CCNA_00787 at 851.315 kb on - strand, within CCNA_00787 at 851.329 kb on + strand, within CCNA_00787 at 851.381 kb on - strand at 851.386 kb on + strand at 851.399 kb on - strand at 851.399 kb on - strand at 851.399 kb on - strand at 851.404 kb on - strand at 851.419 kb on + strand at 851.485 kb on - strand at 851.486 kb on + strand at 851.494 kb on - strand at 851.525 kb on + strand at 851.557 kb on + strand at 851.565 kb on + strand at 851.605 kb on + strand at 851.629 kb on + strand at 851.637 kb on - strand at 851.721 kb on + strand, within CCNA_00788 at 851.759 kb on - strand, within CCNA_00788 at 851.764 kb on - strand, within CCNA_00788 at 851.765 kb on + strand, within CCNA_00788 at 851.773 kb on - strand, within CCNA_00788 at 851.780 kb on + strand, within CCNA_00788 at 851.796 kb on - strand, within CCNA_00788 at 851.806 kb on + strand, within CCNA_00788 at 851.813 kb on + strand, within CCNA_00788 at 851.813 kb on + strand, within CCNA_00788 at 851.821 kb on - strand, within CCNA_00788 at 851.821 kb on - strand, within CCNA_00788 at 851.823 kb on + strand, within CCNA_00788 at 851.823 kb on + strand, within CCNA_00788 at 851.831 kb on - strand, within CCNA_00788 at 851.857 kb on + strand, within CCNA_00788 at 851.865 kb on - strand, within CCNA_00788 at 851.873 kb on - strand, within CCNA_00788 at 851.893 kb on + strand, within CCNA_00788 at 851.896 kb on - strand, within CCNA_00788 at 851.898 kb on + strand, within CCNA_00788 at 851.898 kb on + strand, within CCNA_00788 at 851.917 kb on + strand, within CCNA_00788 at 851.919 kb on + strand, within CCNA_00788 at 851.927 kb on - strand, within CCNA_00788 at 851.953 kb on + strand, within CCNA_00788 at 851.961 kb on - strand, within CCNA_00788 at 851.961 kb on - strand, within CCNA_00788 at 851.961 kb on - strand, within CCNA_00788 at 851.989 kb on - strand, within CCNA_00788 at 852.000 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.033 kb on + strand, within CCNA_00788 at 852.052 kb on + strand, within CCNA_00788 at 852.080 kb on + strand, within CCNA_00788 at 852.080 kb on + strand, within CCNA_00788 at 852.093 kb on - strand, within CCNA_00788 at 852.108 kb on - strand, within CCNA_00788 at 852.152 kb on - strand, within CCNA_00788 at 852.245 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.289 kb on - strand, within CCNA_00788 at 852.307 kb on + strand, within CCNA_00788 at 852.312 kb on + strand, within CCNA_00788 at 852.315 kb on - strand, within CCNA_00788 at 852.321 kb on - strand, within CCNA_00788 at 852.327 kb on - strand, within CCNA_00788 at 852.327 kb on - strand, within CCNA_00788 at 852.327 kb on - strand, within CCNA_00788 at 852.367 kb on + strand, within CCNA_00788 at 852.368 kb on - strand, within CCNA_00788 at 852.382 kb on + strand, within CCNA_00788 at 852.387 kb on + strand, within CCNA_00788
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 849,602 + CCNA_00785 0.81 -0.2 849,610 - CCNA_00785 0.82 +0.2 849,610 - CCNA_00785 0.82 -0.3 849,649 + CCNA_00785 0.84 -0.8 849,677 - CCNA_00785 0.86 -0.5 849,729 + CCNA_00785 0.89 -0.0 849,737 - CCNA_00785 0.89 +0.2 849,742 + CCNA_00785 0.89 +0.3 849,761 + -0.4 849,761 + +0.0 849,761 + -0.6 849,776 + +0.1 849,794 - +0.2 849,858 - -0.1 849,867 + -1.1 849,870 - -0.3 849,884 - +0.6 849,887 + +0.2 849,888 + +0.3 849,895 - +0.5 849,916 - -0.4 849,943 - +0.2 849,947 + -0.3 849,948 + -0.5 849,956 - +0.5 849,956 - +2.3 849,958 + +0.7 849,981 + +0.4 850,021 + -1.4 850,037 + +0.3 850,037 + -0.2 850,037 + -0.1 850,037 + -1.1 850,037 + +0.6 850,045 - +1.3 850,047 + -0.6 850,051 - +0.8 850,054 + -0.4 850,054 + +0.6 850,088 - +0.1 850,088 - +0.4 850,126 + -0.6 850,126 + -2.5 850,134 - +0.6 850,134 - +0.2 850,134 - +0.6 850,134 - +0.1 850,139 - +0.3 850,149 - CCNA_03938 0.10 +0.8 850,361 + CCNA_03938 0.75 -1.4 850,408 + CCNA_03938 0.89 -1.6 850,430 + -0.2 850,438 - +0.5 850,438 - +0.4 850,446 - +0.0 850,541 - +0.2 850,546 + -0.5 850,546 + -0.4 850,546 + -0.4 850,554 - -0.6 850,554 - +0.2 850,554 - +0.3 850,605 - +0.3 850,612 + -0.2 850,647 + CCNA_00787 0.11 -2.2 850,677 + CCNA_00787 0.14 +1.4 850,685 - CCNA_00787 0.15 -0.8 850,691 + CCNA_00787 0.16 -1.6 850,704 - CCNA_00787 0.17 +0.3 850,732 - CCNA_00787 0.21 +1.5 850,750 + CCNA_00787 0.23 -0.8 850,755 + CCNA_00787 0.23 -0.3 850,755 + CCNA_00787 0.23 -0.1 850,763 - CCNA_00787 0.24 +0.9 850,768 - CCNA_00787 0.25 +0.9 850,768 - CCNA_00787 0.25 -0.6 850,769 - CCNA_00787 0.25 +0.1 850,773 + CCNA_00787 0.25 -1.2 850,780 + CCNA_00787 0.26 -0.3 850,788 - CCNA_00787 0.27 -0.4 850,802 - CCNA_00787 0.29 -0.1 850,824 - CCNA_00787 0.31 +0.2 850,826 - CCNA_00787 0.31 +0.5 850,887 + CCNA_00787 0.38 +0.0 850,895 - CCNA_00787 0.39 +0.3 850,895 - CCNA_00787 0.39 -0.6 850,895 - CCNA_00787 0.39 +0.4 850,924 - CCNA_00787 0.43 +0.7 850,933 + CCNA_00787 0.44 -0.3 850,936 - CCNA_00787 0.44 +0.9 850,991 + CCNA_00787 0.50 -1.7 850,999 + CCNA_00787 0.51 +0.0 850,999 - CCNA_00787 0.51 +0.3 851,014 + CCNA_00787 0.53 -0.3 851,014 - CCNA_00787 0.53 +0.7 851,019 + CCNA_00787 0.54 -0.3 851,022 + CCNA_00787 0.54 -1.1 851,045 - CCNA_00787 0.57 +0.4 851,069 + CCNA_00787 0.59 -0.7 851,069 + CCNA_00787 0.59 -0.2 851,076 - CCNA_00787 0.60 +0.2 851,077 - CCNA_00787 0.60 +0.3 851,077 - CCNA_00787 0.60 +0.3 851,077 - CCNA_00787 0.60 +0.8 851,077 - CCNA_00787 0.60 -0.5 851,145 - CCNA_00787 0.68 +0.2 851,145 - CCNA_00787 0.68 +0.6 851,146 - CCNA_00787 0.68 +0.1 851,152 + CCNA_00787 0.69 +1.4 851,191 - CCNA_00787 0.73 +0.6 851,191 - CCNA_00787 0.73 +1.2 851,193 + CCNA_00787 0.74 -0.6 851,216 - CCNA_00787 0.76 +0.7 851,237 + CCNA_00787 0.79 -1.7 851,251 - CCNA_00787 0.80 -0.6 851,256 - CCNA_00787 0.81 +0.5 851,261 - CCNA_00787 0.82 +0.4 851,264 + CCNA_00787 0.82 +0.1 851,315 - CCNA_00787 0.88 -0.1 851,329 + CCNA_00787 0.89 +0.1 851,381 - +0.5 851,386 + +0.3 851,399 - +0.0 851,399 - +0.2 851,399 - -0.1 851,404 - +0.6 851,419 + -0.4 851,485 - -1.3 851,486 + -0.6 851,494 - +0.4 851,525 + +0.0 851,557 + +0.0 851,565 + +0.3 851,605 + -0.1 851,629 + +0.3 851,637 - +0.2 851,721 + CCNA_00788 0.13 +0.5 851,759 - CCNA_00788 0.16 +1.7 851,764 - CCNA_00788 0.16 -0.7 851,765 + CCNA_00788 0.16 +0.1 851,773 - CCNA_00788 0.17 -0.1 851,780 + CCNA_00788 0.17 +0.1 851,796 - CCNA_00788 0.18 +0.2 851,806 + CCNA_00788 0.19 -0.4 851,813 + CCNA_00788 0.20 +0.2 851,813 + CCNA_00788 0.20 +0.0 851,821 - CCNA_00788 0.20 +0.2 851,821 - CCNA_00788 0.20 -0.4 851,823 + CCNA_00788 0.20 -0.3 851,823 + CCNA_00788 0.20 +1.0 851,831 - CCNA_00788 0.21 +1.5 851,857 + CCNA_00788 0.23 -0.8 851,865 - CCNA_00788 0.24 -0.3 851,873 - CCNA_00788 0.24 +0.8 851,893 + CCNA_00788 0.26 -0.2 851,896 - CCNA_00788 0.26 -2.2 851,898 + CCNA_00788 0.26 +0.9 851,898 + CCNA_00788 0.26 -0.3 851,917 + CCNA_00788 0.28 +0.3 851,919 + CCNA_00788 0.28 +1.7 851,927 - CCNA_00788 0.28 -0.5 851,953 + CCNA_00788 0.30 +0.9 851,961 - CCNA_00788 0.31 -0.1 851,961 - CCNA_00788 0.31 -2.2 851,961 - CCNA_00788 0.31 -0.7 851,989 - CCNA_00788 0.33 +1.0 852,000 + CCNA_00788 0.34 -0.1 852,023 + CCNA_00788 0.36 +0.3 852,023 + CCNA_00788 0.36 +0.2 852,023 + CCNA_00788 0.36 -2.7 852,031 - CCNA_00788 0.36 -0.4 852,031 - CCNA_00788 0.36 +0.2 852,031 - CCNA_00788 0.36 +0.8 852,031 - CCNA_00788 0.36 -0.7 852,031 - CCNA_00788 0.36 -2.2 852,033 + CCNA_00788 0.36 +2.3 852,052 + CCNA_00788 0.38 -0.1 852,080 + CCNA_00788 0.40 +0.5 852,080 + CCNA_00788 0.40 +0.2 852,093 - CCNA_00788 0.41 -0.7 852,108 - CCNA_00788 0.42 -1.0 852,152 - CCNA_00788 0.45 -0.5 852,245 + CCNA_00788 0.52 -0.5 852,258 + CCNA_00788 0.53 +0.3 852,258 + CCNA_00788 0.53 -0.1 852,258 + CCNA_00788 0.53 +0.3 852,289 - CCNA_00788 0.56 -1.8 852,307 + CCNA_00788 0.57 -0.7 852,312 + CCNA_00788 0.58 +0.3 852,315 - CCNA_00788 0.58 +0.2 852,321 - CCNA_00788 0.58 +0.6 852,327 - CCNA_00788 0.59 -0.7 852,327 - CCNA_00788 0.59 +0.7 852,327 - CCNA_00788 0.59 +0.5 852,367 + CCNA_00788 0.62 +1.0 852,368 - CCNA_00788 0.62 -0.2 852,382 + CCNA_00788 0.63 -0.0 852,387 + CCNA_00788 0.63 +0.3
Or see this region's nucleotide sequence