Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00747

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00745 and CCNA_00746 overlap by 4 nucleotidesCCNA_00746 and CCNA_00747 are separated by 98 nucleotidesCCNA_00747 and CCNA_00748 are separated by 210 nucleotidesCCNA_00748 and CCNA_00749 are separated by 4 nucleotides CCNA_00745: CCNA_00745 - hypothetical protein, at 802,070 to 802,774 _00745 CCNA_00746: CCNA_00746 - ADA regulatory protein/O6-methylguanine-DNA, at 802,771 to 803,496 _00746 CCNA_00747: CCNA_00747 - cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF, at 803,595 to 804,953 _00747 CCNA_00748: CCNA_00748 - ferrous iron transport protein A, at 805,164 to 805,484 _00748 CCNA_00749: CCNA_00749 - ferrous iron transport protein B, at 805,489 to 807,384 _00749 Position (kb) 803 804 805Strain fitness (log2 ratio) -2 -1 0 1 2at 802.602 kb on - strand, within CCNA_00745at 802.602 kb on - strand, within CCNA_00745at 802.602 kb on - strand, within CCNA_00745at 802.626 kb on - strand, within CCNA_00745at 802.628 kb on + strand, within CCNA_00745at 802.628 kb on + strand, within CCNA_00745at 802.647 kb on + strand, within CCNA_00745at 802.673 kb on + strand, within CCNA_00745at 802.673 kb on + strand, within CCNA_00745at 802.673 kb on + strand, within CCNA_00745at 802.681 kb on - strand, within CCNA_00745at 802.681 kb on - strand, within CCNA_00745at 802.681 kb on - strand, within CCNA_00745at 802.697 kb on + strand, within CCNA_00745at 802.700 kb on - strand, within CCNA_00745at 802.702 kb on + strand, within CCNA_00745at 802.710 kb on - strandat 802.739 kb on + strandat 802.747 kb on - strandat 802.753 kb on - strandat 802.807 kb on - strandat 802.873 kb on - strand, within CCNA_00746at 802.892 kb on + strand, within CCNA_00746at 802.897 kb on + strand, within CCNA_00746at 802.897 kb on + strand, within CCNA_00746at 802.898 kb on + strand, within CCNA_00746at 802.905 kb on - strand, within CCNA_00746at 802.919 kb on + strand, within CCNA_00746at 802.919 kb on + strand, within CCNA_00746at 802.919 kb on + strand, within CCNA_00746at 802.927 kb on - strand, within CCNA_00746at 802.927 kb on - strand, within CCNA_00746at 802.927 kb on - strand, within CCNA_00746at 802.936 kb on + strand, within CCNA_00746at 803.000 kb on - strand, within CCNA_00746at 803.040 kb on + strand, within CCNA_00746at 803.052 kb on + strand, within CCNA_00746at 803.052 kb on + strand, within CCNA_00746at 803.060 kb on - strand, within CCNA_00746at 803.060 kb on - strand, within CCNA_00746at 803.060 kb on - strand, within CCNA_00746at 803.062 kb on + strand, within CCNA_00746at 803.110 kb on + strand, within CCNA_00746at 803.110 kb on + strand, within CCNA_00746at 803.129 kb on + strand, within CCNA_00746at 803.140 kb on + strand, within CCNA_00746at 803.176 kb on + strand, within CCNA_00746at 803.198 kb on - strand, within CCNA_00746at 803.226 kb on + strand, within CCNA_00746at 803.226 kb on + strand, within CCNA_00746at 803.226 kb on + strand, within CCNA_00746at 803.226 kb on + strand, within CCNA_00746at 803.226 kb on + strand, within CCNA_00746at 803.234 kb on - strand, within CCNA_00746at 803.234 kb on - strand, within CCNA_00746at 803.234 kb on - strand, within CCNA_00746at 803.234 kb on - strand, within CCNA_00746at 803.234 kb on - strand, within CCNA_00746at 803.234 kb on - strand, within CCNA_00746at 803.234 kb on - strand, within CCNA_00746at 803.236 kb on + strand, within CCNA_00746at 803.244 kb on - strand, within CCNA_00746at 803.244 kb on - strand, within CCNA_00746at 803.254 kb on + strand, within CCNA_00746at 803.254 kb on + strand, within CCNA_00746at 803.254 kb on + strand, within CCNA_00746at 803.257 kb on - strand, within CCNA_00746at 803.262 kb on - strand, within CCNA_00746at 803.262 kb on - strand, within CCNA_00746at 803.262 kb on - strand, within CCNA_00746at 803.273 kb on + strand, within CCNA_00746at 803.287 kb on + strand, within CCNA_00746at 803.297 kb on - strand, within CCNA_00746at 803.300 kb on - strand, within CCNA_00746at 803.305 kb on - strand, within CCNA_00746at 803.307 kb on + strand, within CCNA_00746at 803.315 kb on - strand, within CCNA_00746at 803.333 kb on + strand, within CCNA_00746at 803.384 kb on + strand, within CCNA_00746at 803.432 kb on + strandat 803.432 kb on + strandat 803.459 kb on - strandat 803.482 kb on + strandat 803.482 kb on + strandat 803.490 kb on - strandat 803.490 kb on - strandat 803.490 kb on - strandat 803.526 kb on + strandat 803.526 kb on + strandat 803.547 kb on - strandat 803.548 kb on + strandat 803.556 kb on - strandat 803.570 kb on + strandat 803.578 kb on - strandat 803.658 kb on + strandat 803.661 kb on - strandat 803.663 kb on + strandat 803.666 kb on - strandat 803.666 kb on - strandat 803.671 kb on - strandat 803.755 kb on + strand, within CCNA_00747at 803.795 kb on + strand, within CCNA_00747at 803.839 kb on + strand, within CCNA_00747at 803.847 kb on - strand, within CCNA_00747at 803.847 kb on - strand, within CCNA_00747at 803.969 kb on - strand, within CCNA_00747at 803.988 kb on + strand, within CCNA_00747at 804.069 kb on + strand, within CCNA_00747at 804.087 kb on - strand, within CCNA_00747at 804.087 kb on - strand, within CCNA_00747at 804.213 kb on + strand, within CCNA_00747at 804.213 kb on - strand, within CCNA_00747at 804.237 kb on + strand, within CCNA_00747at 804.245 kb on - strand, within CCNA_00747at 804.289 kb on + strand, within CCNA_00747at 804.322 kb on + strand, within CCNA_00747at 804.368 kb on + strand, within CCNA_00747at 804.466 kb on - strand, within CCNA_00747at 804.544 kb on + strand, within CCNA_00747at 804.544 kb on + strand, within CCNA_00747at 804.557 kb on - strand, within CCNA_00747at 804.565 kb on - strand, within CCNA_00747at 804.691 kb on - strand, within CCNA_00747at 804.729 kb on + strand, within CCNA_00747at 804.742 kb on - strand, within CCNA_00747at 804.747 kb on + strand, within CCNA_00747at 804.840 kb on - strandat 804.840 kb on - strandat 804.890 kb on + strandat 804.900 kb on + strandat 804.909 kb on - strandat 804.909 kb on - strandat 804.932 kb on + strandat 804.932 kb on - strandat 804.932 kb on - strandat 804.971 kb on + strandat 804.976 kb on + strandat 804.976 kb on + strandat 804.976 kb on + strandat 804.976 kb on + strandat 804.979 kb on - strandat 804.979 kb on - strandat 804.981 kb on + strandat 804.981 kb on + strandat 804.989 kb on - strandat 804.989 kb on - strandat 805.043 kb on - strandat 805.049 kb on + strandat 805.098 kb on + strandat 805.164 kb on - strandat 805.166 kb on - strandat 805.479 kb on + strandat 805.479 kb on + strandat 805.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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802,602 - CCNA_00745 0.75 +0.6
802,602 - CCNA_00745 0.75 -1.8
802,602 - CCNA_00745 0.75 +0.4
802,626 - CCNA_00745 0.79 +0.3
802,628 + CCNA_00745 0.79 -0.4
802,628 + CCNA_00745 0.79 -0.0
802,647 + CCNA_00745 0.82 -1.4
802,673 + CCNA_00745 0.86 -2.3
802,673 + CCNA_00745 0.86 -0.5
802,673 + CCNA_00745 0.86 +1.2
802,681 - CCNA_00745 0.87 -0.2
802,681 - CCNA_00745 0.87 -0.4
802,681 - CCNA_00745 0.87 +0.2
802,697 + CCNA_00745 0.89 +0.1
802,700 - CCNA_00745 0.89 -0.1
802,702 + CCNA_00745 0.90 -0.7
802,710 - +1.5
802,739 + -1.0
802,747 - +0.7
802,753 - -0.6
802,807 - -1.3
802,873 - CCNA_00746 0.14 -1.0
802,892 + CCNA_00746 0.17 +0.0
802,897 + CCNA_00746 0.17 -0.2
802,897 + CCNA_00746 0.17 +0.4
802,898 + CCNA_00746 0.17 +0.3
802,905 - CCNA_00746 0.18 -0.1
802,919 + CCNA_00746 0.20 -0.6
802,919 + CCNA_00746 0.20 -0.8
802,919 + CCNA_00746 0.20 -2.0
802,927 - CCNA_00746 0.21 -0.0
802,927 - CCNA_00746 0.21 -1.9
802,927 - CCNA_00746 0.21 -0.8
802,936 + CCNA_00746 0.23 +1.2
803,000 - CCNA_00746 0.32 +0.7
803,040 + CCNA_00746 0.37 +2.3
803,052 + CCNA_00746 0.39 +0.5
803,052 + CCNA_00746 0.39 -0.2
803,060 - CCNA_00746 0.40 +0.3
803,060 - CCNA_00746 0.40 -0.6
803,060 - CCNA_00746 0.40 +0.4
803,062 + CCNA_00746 0.40 -0.1
803,110 + CCNA_00746 0.47 +0.1
803,110 + CCNA_00746 0.47 -2.1
803,129 + CCNA_00746 0.49 -0.4
803,140 + CCNA_00746 0.51 -0.0
803,176 + CCNA_00746 0.56 -0.6
803,198 - CCNA_00746 0.59 -0.2
803,226 + CCNA_00746 0.63 +0.5
803,226 + CCNA_00746 0.63 -0.4
803,226 + CCNA_00746 0.63 +1.0
803,226 + CCNA_00746 0.63 -0.0
803,226 + CCNA_00746 0.63 -0.0
803,234 - CCNA_00746 0.64 -0.8
803,234 - CCNA_00746 0.64 +0.7
803,234 - CCNA_00746 0.64 +0.6
803,234 - CCNA_00746 0.64 +0.2
803,234 - CCNA_00746 0.64 +0.2
803,234 - CCNA_00746 0.64 +1.6
803,234 - CCNA_00746 0.64 -0.6
803,236 + CCNA_00746 0.64 -0.1
803,244 - CCNA_00746 0.65 +0.3
803,244 - CCNA_00746 0.65 -0.7
803,254 + CCNA_00746 0.67 +0.0
803,254 + CCNA_00746 0.67 +0.6
803,254 + CCNA_00746 0.67 +0.2
803,257 - CCNA_00746 0.67 -0.1
803,262 - CCNA_00746 0.68 +0.6
803,262 - CCNA_00746 0.68 -0.3
803,262 - CCNA_00746 0.68 -1.7
803,273 + CCNA_00746 0.69 -0.5
803,287 + CCNA_00746 0.71 +0.5
803,297 - CCNA_00746 0.72 +0.4
803,300 - CCNA_00746 0.73 -0.3
803,305 - CCNA_00746 0.74 +0.4
803,307 + CCNA_00746 0.74 +0.4
803,315 - CCNA_00746 0.75 -0.0
803,333 + CCNA_00746 0.77 -0.1
803,384 + CCNA_00746 0.84 +0.9
803,432 + -0.8
803,432 + -1.5
803,459 - +0.2
803,482 + -0.3
803,482 + +0.4
803,490 - -1.2
803,490 - -0.0
803,490 - +0.3
803,526 + -1.0
803,526 + +1.5
803,547 - -0.4
803,548 + +1.7
803,556 - +0.2
803,570 + +0.6
803,578 - +1.4
803,658 + +0.1
803,661 - +0.5
803,663 + -0.3
803,666 - +0.3
803,666 - -0.2
803,671 - -2.2
803,755 + CCNA_00747 0.12 -0.7
803,795 + CCNA_00747 0.15 -1.6
803,839 + CCNA_00747 0.18 -0.2
803,847 - CCNA_00747 0.19 -2.0
803,847 - CCNA_00747 0.19 -0.7
803,969 - CCNA_00747 0.28 +1.2
803,988 + CCNA_00747 0.29 +0.4
804,069 + CCNA_00747 0.35 -0.2
804,087 - CCNA_00747 0.36 -1.4
804,087 - CCNA_00747 0.36 -1.2
804,213 + CCNA_00747 0.45 -1.0
804,213 - CCNA_00747 0.45 +0.1
804,237 + CCNA_00747 0.47 +0.8
804,245 - CCNA_00747 0.48 -0.8
804,289 + CCNA_00747 0.51 +0.7
804,322 + CCNA_00747 0.53 -1.0
804,368 + CCNA_00747 0.57 -1.4
804,466 - CCNA_00747 0.64 -0.2
804,544 + CCNA_00747 0.70 -0.1
804,544 + CCNA_00747 0.70 -2.6
804,557 - CCNA_00747 0.71 -0.2
804,565 - CCNA_00747 0.71 -0.6
804,691 - CCNA_00747 0.81 -2.1
804,729 + CCNA_00747 0.83 -0.4
804,742 - CCNA_00747 0.84 +0.2
804,747 + CCNA_00747 0.85 -0.6
804,840 - -0.6
804,840 - +0.2
804,890 + -0.3
804,900 + -0.2
804,909 - +0.1
804,909 - +0.3
804,932 + +0.4
804,932 - +0.1
804,932 - +0.4
804,971 + +0.1
804,976 + -0.0
804,976 + +1.0
804,976 + +0.4
804,976 + +0.0
804,979 - +0.0
804,979 - -0.0
804,981 + +0.4
804,981 + -0.4
804,989 - +0.2
804,989 - -0.7
805,043 - -0.8
805,049 + +0.7
805,098 + +0.7
805,164 - -0.2
805,166 - -0.7
805,479 + +0.8
805,479 + +1.1
805,487 - -1.3

Or see this region's nucleotide sequence