Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00727

Experiment: PYE no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00726 and CCNA_00727 are separated by 156 nucleotidesCCNA_00727 and CCNA_00728 are separated by 72 nucleotides CCNA_00726: CCNA_00726 - acyl-CoA dehydrogenase, at 781,663 to 782,970 _00726 CCNA_00727: CCNA_00727 - ribosomal-protein-alanine acetyltransferase, at 783,127 to 783,723 _00727 CCNA_00728: CCNA_00728 - hypothetical protein, at 783,796 to 784,959 _00728 Position (kb) 783 784Strain fitness (log2 ratio) -2 -1 0 1 2 3at 782.167 kb on + strand, within CCNA_00726at 782.221 kb on - strand, within CCNA_00726at 782.257 kb on + strand, within CCNA_00726at 782.271 kb on + strand, within CCNA_00726at 782.284 kb on + strand, within CCNA_00726at 782.286 kb on - strand, within CCNA_00726at 782.286 kb on - strand, within CCNA_00726at 782.352 kb on - strand, within CCNA_00726at 782.378 kb on + strand, within CCNA_00726at 782.382 kb on + strand, within CCNA_00726at 782.421 kb on + strand, within CCNA_00726at 782.424 kb on - strand, within CCNA_00726at 782.431 kb on + strand, within CCNA_00726at 782.479 kb on - strand, within CCNA_00726at 782.499 kb on + strand, within CCNA_00726at 782.525 kb on + strand, within CCNA_00726at 782.533 kb on - strand, within CCNA_00726at 782.533 kb on - strand, within CCNA_00726at 782.552 kb on + strand, within CCNA_00726at 782.613 kb on + strand, within CCNA_00726at 782.629 kb on + strand, within CCNA_00726at 782.660 kb on - strand, within CCNA_00726at 782.672 kb on + strand, within CCNA_00726at 782.694 kb on + strand, within CCNA_00726at 782.700 kb on + strand, within CCNA_00726at 782.708 kb on - strand, within CCNA_00726at 782.731 kb on - strand, within CCNA_00726at 782.733 kb on + strand, within CCNA_00726at 782.743 kb on + strand, within CCNA_00726at 782.752 kb on + strand, within CCNA_00726at 782.752 kb on + strand, within CCNA_00726at 782.760 kb on - strand, within CCNA_00726at 782.760 kb on - strand, within CCNA_00726at 782.760 kb on - strand, within CCNA_00726at 782.780 kb on - strand, within CCNA_00726at 782.798 kb on + strand, within CCNA_00726at 782.798 kb on + strand, within CCNA_00726at 782.804 kb on + strand, within CCNA_00726at 782.840 kb on + strandat 782.874 kb on - strandat 782.902 kb on - strandat 782.937 kb on - strandat 782.965 kb on + strandat 782.965 kb on + strandat 782.965 kb on + strandat 782.973 kb on - strandat 782.973 kb on - strandat 782.973 kb on - strandat 783.066 kb on + strandat 783.067 kb on + strandat 783.067 kb on + strandat 783.067 kb on + strandat 783.067 kb on + strandat 783.070 kb on - strandat 783.075 kb on - strandat 783.075 kb on - strandat 783.084 kb on + strandat 783.092 kb on - strandat 783.122 kb on + strandat 783.136 kb on - strandat 783.171 kb on + strandat 783.253 kb on + strand, within CCNA_00727at 783.261 kb on - strand, within CCNA_00727at 783.282 kb on + strand, within CCNA_00727at 783.282 kb on + strand, within CCNA_00727at 783.282 kb on + strand, within CCNA_00727at 783.290 kb on - strand, within CCNA_00727at 783.337 kb on - strand, within CCNA_00727at 783.361 kb on + strand, within CCNA_00727at 783.369 kb on - strand, within CCNA_00727at 783.369 kb on - strand, within CCNA_00727at 783.369 kb on - strand, within CCNA_00727at 783.369 kb on - strand, within CCNA_00727at 783.371 kb on + strand, within CCNA_00727at 783.422 kb on - strand, within CCNA_00727at 783.429 kb on + strand, within CCNA_00727at 783.451 kb on + strand, within CCNA_00727at 783.455 kb on - strand, within CCNA_00727at 783.459 kb on - strand, within CCNA_00727at 783.459 kb on - strand, within CCNA_00727at 783.468 kb on + strand, within CCNA_00727at 783.476 kb on + strand, within CCNA_00727at 783.481 kb on + strand, within CCNA_00727at 783.502 kb on - strand, within CCNA_00727at 783.504 kb on + strand, within CCNA_00727at 783.504 kb on + strand, within CCNA_00727at 783.504 kb on + strand, within CCNA_00727at 783.512 kb on - strand, within CCNA_00727at 783.512 kb on - strand, within CCNA_00727at 783.512 kb on - strand, within CCNA_00727at 783.512 kb on - strand, within CCNA_00727at 783.526 kb on - strand, within CCNA_00727at 783.526 kb on - strand, within CCNA_00727at 783.526 kb on - strand, within CCNA_00727at 783.554 kb on + strand, within CCNA_00727at 783.598 kb on - strand, within CCNA_00727at 783.600 kb on + strand, within CCNA_00727at 783.613 kb on - strand, within CCNA_00727at 783.669 kb on - strandat 783.726 kb on - strandat 783.775 kb on + strandat 783.783 kb on - strandat 783.845 kb on + strandat 783.860 kb on + strandat 783.903 kb on - strandat 783.904 kb on + strandat 783.925 kb on + strand, within CCNA_00728at 783.992 kb on + strand, within CCNA_00728at 783.992 kb on + strand, within CCNA_00728at 784.000 kb on - strand, within CCNA_00728at 784.005 kb on - strand, within CCNA_00728at 784.052 kb on + strand, within CCNA_00728at 784.052 kb on + strand, within CCNA_00728at 784.060 kb on - strand, within CCNA_00728at 784.085 kb on + strand, within CCNA_00728at 784.096 kb on + strand, within CCNA_00728at 784.098 kb on - strand, within CCNA_00728at 784.106 kb on + strand, within CCNA_00728at 784.114 kb on - strand, within CCNA_00728at 784.120 kb on + strand, within CCNA_00728at 784.124 kb on - strand, within CCNA_00728at 784.294 kb on + strand, within CCNA_00728at 784.294 kb on - strand, within CCNA_00728at 784.308 kb on - strand, within CCNA_00728at 784.316 kb on + strand, within CCNA_00728at 784.324 kb on - strand, within CCNA_00728at 784.325 kb on - strand, within CCNA_00728at 784.327 kb on + strand, within CCNA_00728at 784.332 kb on + strand, within CCNA_00728at 784.332 kb on + strand, within CCNA_00728at 784.333 kb on + strand, within CCNA_00728at 784.333 kb on + strand, within CCNA_00728at 784.344 kb on + strand, within CCNA_00728at 784.361 kb on - strand, within CCNA_00728at 784.384 kb on - strand, within CCNA_00728at 784.405 kb on + strand, within CCNA_00728at 784.413 kb on - strand, within CCNA_00728at 784.471 kb on - strand, within CCNA_00728at 784.471 kb on - strand, within CCNA_00728at 784.478 kb on - strand, within CCNA_00728at 784.503 kb on - strand, within CCNA_00728at 784.551 kb on + strand, within CCNA_00728at 784.563 kb on + strand, within CCNA_00728at 784.563 kb on + strand, within CCNA_00728at 784.563 kb on + strand, within CCNA_00728at 784.571 kb on - strand, within CCNA_00728at 784.571 kb on - strand, within CCNA_00728at 784.620 kb on + strand, within CCNA_00728at 784.628 kb on - strand, within CCNA_00728at 784.631 kb on + strand, within CCNA_00728at 784.634 kb on - strand, within CCNA_00728at 784.641 kb on + strand, within CCNA_00728at 784.675 kb on + strand, within CCNA_00728at 784.675 kb on + strand, within CCNA_00728at 784.675 kb on + strand, within CCNA_00728at 784.682 kb on - strand, within CCNA_00728at 784.683 kb on - strand, within CCNA_00728at 784.698 kb on + strand, within CCNA_00728at 784.720 kb on - strand, within CCNA_00728

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
remove
782,167 + CCNA_00726 0.39 -0.4
782,221 - CCNA_00726 0.43 -0.8
782,257 + CCNA_00726 0.45 -0.4
782,271 + CCNA_00726 0.46 -0.1
782,284 + CCNA_00726 0.47 -0.0
782,286 - CCNA_00726 0.48 -0.3
782,286 - CCNA_00726 0.48 +2.0
782,352 - CCNA_00726 0.53 +0.4
782,378 + CCNA_00726 0.55 +0.3
782,382 + CCNA_00726 0.55 -0.2
782,421 + CCNA_00726 0.58 -0.5
782,424 - CCNA_00726 0.58 +1.5
782,431 + CCNA_00726 0.59 +0.8
782,479 - CCNA_00726 0.62 +0.1
782,499 + CCNA_00726 0.64 -0.2
782,525 + CCNA_00726 0.66 -1.2
782,533 - CCNA_00726 0.67 -0.2
782,533 - CCNA_00726 0.67 +0.6
782,552 + CCNA_00726 0.68 -1.9
782,613 + CCNA_00726 0.73 +0.5
782,629 + CCNA_00726 0.74 -1.0
782,660 - CCNA_00726 0.76 +0.6
782,672 + CCNA_00726 0.77 +0.5
782,694 + CCNA_00726 0.79 -0.7
782,700 + CCNA_00726 0.79 -0.2
782,708 - CCNA_00726 0.80 +0.3
782,731 - CCNA_00726 0.82 +0.2
782,733 + CCNA_00726 0.82 +0.5
782,743 + CCNA_00726 0.83 -1.4
782,752 + CCNA_00726 0.83 -2.0
782,752 + CCNA_00726 0.83 -1.2
782,760 - CCNA_00726 0.84 +0.3
782,760 - CCNA_00726 0.84 +0.9
782,760 - CCNA_00726 0.84 +0.3
782,780 - CCNA_00726 0.85 +0.5
782,798 + CCNA_00726 0.87 -0.6
782,798 + CCNA_00726 0.87 -0.2
782,804 + CCNA_00726 0.87 +0.4
782,840 + +0.8
782,874 - -0.3
782,902 - +0.4
782,937 - +0.5
782,965 + +0.3
782,965 + -0.1
782,965 + -1.8
782,973 - +0.1
782,973 - +0.2
782,973 - -0.5
783,066 + -2.7
783,067 + -0.2
783,067 + +0.2
783,067 + +0.2
783,067 + -1.7
783,070 - -1.1
783,075 - -0.4
783,075 - -1.2
783,084 + -0.3
783,092 - -0.1
783,122 + +0.9
783,136 - -0.5
783,171 + +1.2
783,253 + CCNA_00727 0.21 +1.2
783,261 - CCNA_00727 0.22 -0.1
783,282 + CCNA_00727 0.26 -0.2
783,282 + CCNA_00727 0.26 -0.0
783,282 + CCNA_00727 0.26 +0.5
783,290 - CCNA_00727 0.27 -1.9
783,337 - CCNA_00727 0.35 -0.8
783,361 + CCNA_00727 0.39 +0.2
783,369 - CCNA_00727 0.41 +1.4
783,369 - CCNA_00727 0.41 -1.3
783,369 - CCNA_00727 0.41 +0.6
783,369 - CCNA_00727 0.41 +0.4
783,371 + CCNA_00727 0.41 +0.5
783,422 - CCNA_00727 0.49 +0.8
783,429 + CCNA_00727 0.51 +1.2
783,451 + CCNA_00727 0.54 +0.9
783,455 - CCNA_00727 0.55 -0.3
783,459 - CCNA_00727 0.56 -1.0
783,459 - CCNA_00727 0.56 +0.2
783,468 + CCNA_00727 0.57 -0.6
783,476 + CCNA_00727 0.58 +0.1
783,481 + CCNA_00727 0.59 -0.2
783,502 - CCNA_00727 0.63 -1.7
783,504 + CCNA_00727 0.63 +0.9
783,504 + CCNA_00727 0.63 -0.0
783,504 + CCNA_00727 0.63 +0.6
783,512 - CCNA_00727 0.64 +0.7
783,512 - CCNA_00727 0.64 +0.6
783,512 - CCNA_00727 0.64 +0.3
783,512 - CCNA_00727 0.64 +1.8
783,526 - CCNA_00727 0.67 -0.2
783,526 - CCNA_00727 0.67 +0.2
783,526 - CCNA_00727 0.67 -0.9
783,554 + CCNA_00727 0.72 +0.7
783,598 - CCNA_00727 0.79 +0.9
783,600 + CCNA_00727 0.79 +0.8
783,613 - CCNA_00727 0.81 +1.8
783,669 - -0.3
783,726 - +0.4
783,775 + +0.3
783,783 - -1.1
783,845 + -0.5
783,860 + +0.4
783,903 - -0.4
783,904 + -0.0
783,925 + CCNA_00728 0.11 +0.0
783,992 + CCNA_00728 0.17 -0.6
783,992 + CCNA_00728 0.17 -0.3
784,000 - CCNA_00728 0.18 +0.1
784,005 - CCNA_00728 0.18 -0.1
784,052 + CCNA_00728 0.22 +0.3
784,052 + CCNA_00728 0.22 +1.4
784,060 - CCNA_00728 0.23 +0.0
784,085 + CCNA_00728 0.25 -0.0
784,096 + CCNA_00728 0.26 +0.2
784,098 - CCNA_00728 0.26 +0.1
784,106 + CCNA_00728 0.27 +0.2
784,114 - CCNA_00728 0.27 -0.6
784,120 + CCNA_00728 0.28 -0.1
784,124 - CCNA_00728 0.28 +0.1
784,294 + CCNA_00728 0.43 +0.4
784,294 - CCNA_00728 0.43 -0.3
784,308 - CCNA_00728 0.44 -0.9
784,316 + CCNA_00728 0.45 -0.1
784,324 - CCNA_00728 0.45 -1.0
784,325 - CCNA_00728 0.45 -0.0
784,327 + CCNA_00728 0.46 +0.4
784,332 + CCNA_00728 0.46 -0.2
784,332 + CCNA_00728 0.46 -0.6
784,333 + CCNA_00728 0.46 +0.5
784,333 + CCNA_00728 0.46 +0.7
784,344 + CCNA_00728 0.47 -0.1
784,361 - CCNA_00728 0.49 -1.5
784,384 - CCNA_00728 0.51 -0.7
784,405 + CCNA_00728 0.52 -1.5
784,413 - CCNA_00728 0.53 +0.0
784,471 - CCNA_00728 0.58 +0.6
784,471 - CCNA_00728 0.58 -0.2
784,478 - CCNA_00728 0.59 -0.8
784,503 - CCNA_00728 0.61 -0.3
784,551 + CCNA_00728 0.65 -0.1
784,563 + CCNA_00728 0.66 +0.1
784,563 + CCNA_00728 0.66 +0.2
784,563 + CCNA_00728 0.66 -0.3
784,571 - CCNA_00728 0.67 -1.6
784,571 - CCNA_00728 0.67 -1.0
784,620 + CCNA_00728 0.71 -0.7
784,628 - CCNA_00728 0.71 -0.2
784,631 + CCNA_00728 0.72 -0.6
784,634 - CCNA_00728 0.72 -1.6
784,641 + CCNA_00728 0.73 +2.8
784,675 + CCNA_00728 0.76 +0.0
784,675 + CCNA_00728 0.76 +0.4
784,675 + CCNA_00728 0.76 +0.6
784,682 - CCNA_00728 0.76 -0.1
784,683 - CCNA_00728 0.76 +0.1
784,698 + CCNA_00728 0.77 +0.4
784,720 - CCNA_00728 0.79 -2.7

Or see this region's nucleotide sequence