Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00708

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00707 and CCNA_00708 overlap by 4 nucleotidesCCNA_00708 and CCNA_00709 are separated by 107 nucleotidesCCNA_00709 and CCNA_00710 are separated by 120 nucleotides CCNA_00707: CCNA_00707 - hypothetical protein, at 764,103 to 765,185 _00707 CCNA_00708: CCNA_00708 - cobaltochelatase cobT subunit, at 765,182 to 767,110 _00708 CCNA_00709: CCNA_00709 - hypothetical protein, at 767,218 to 767,400 _00709 CCNA_00710: CCNA_00710 - alpha/beta hydrolase family protein, at 767,521 to 768,690 _00710 Position (kb) 765 766 767 768Strain fitness (log2 ratio) -2 -1 0 1 2 3at 764.189 kb on - strandat 764.234 kb on - strand, within CCNA_00707at 764.247 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.289 kb on - strand, within CCNA_00707at 764.351 kb on - strand, within CCNA_00707at 764.396 kb on + strand, within CCNA_00707at 764.417 kb on - strand, within CCNA_00707at 764.448 kb on + strand, within CCNA_00707at 764.449 kb on - strand, within CCNA_00707at 764.458 kb on + strand, within CCNA_00707at 764.463 kb on + strand, within CCNA_00707at 764.463 kb on + strand, within CCNA_00707at 764.466 kb on - strand, within CCNA_00707at 764.494 kb on + strand, within CCNA_00707at 764.502 kb on - strand, within CCNA_00707at 764.529 kb on - strand, within CCNA_00707at 764.537 kb on + strand, within CCNA_00707at 764.564 kb on - strand, within CCNA_00707at 764.584 kb on + strand, within CCNA_00707at 764.592 kb on + strand, within CCNA_00707at 764.592 kb on + strand, within CCNA_00707at 764.600 kb on - strand, within CCNA_00707at 764.628 kb on - strand, within CCNA_00707at 764.645 kb on + strand, within CCNA_00707at 764.730 kb on - strand, within CCNA_00707at 764.735 kb on - strand, within CCNA_00707at 764.924 kb on - strand, within CCNA_00707at 764.958 kb on + strand, within CCNA_00707at 764.971 kb on - strand, within CCNA_00707at 764.982 kb on + strand, within CCNA_00707at 764.990 kb on - strand, within CCNA_00707at 765.003 kb on + strand, within CCNA_00707at 765.014 kb on + strand, within CCNA_00707at 765.075 kb on - strand, within CCNA_00707at 765.075 kb on - strand, within CCNA_00707at 765.075 kb on - strand, within CCNA_00707at 765.135 kb on + strandat 765.154 kb on - strandat 765.185 kb on + strandat 765.207 kb on + strandat 765.207 kb on + strandat 765.276 kb on - strandat 765.279 kb on + strandat 765.279 kb on + strandat 765.287 kb on - strandat 765.434 kb on - strand, within CCNA_00708at 765.574 kb on - strand, within CCNA_00708at 765.717 kb on + strand, within CCNA_00708at 765.778 kb on - strand, within CCNA_00708at 765.799 kb on + strand, within CCNA_00708at 765.807 kb on - strand, within CCNA_00708at 766.141 kb on + strand, within CCNA_00708at 766.357 kb on - strand, within CCNA_00708at 766.394 kb on - strand, within CCNA_00708at 766.481 kb on - strand, within CCNA_00708at 766.482 kb on - strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.993 kb on + strandat 767.063 kb on - strandat 767.078 kb on - strandat 767.078 kb on - strandat 767.113 kb on - strandat 767.114 kb on - strandat 767.127 kb on - strandat 767.176 kb on - strandat 767.207 kb on - strandat 767.230 kb on + strandat 767.266 kb on + strand, within CCNA_00709at 767.266 kb on + strand, within CCNA_00709at 767.266 kb on + strand, within CCNA_00709at 767.271 kb on + strand, within CCNA_00709at 767.306 kb on - strand, within CCNA_00709at 767.314 kb on + strand, within CCNA_00709at 767.353 kb on - strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.379 kb on - strand, within CCNA_00709at 767.379 kb on - strand, within CCNA_00709at 767.379 kb on - strand, within CCNA_00709at 767.381 kb on - strand, within CCNA_00709at 767.381 kb on - strand, within CCNA_00709at 767.381 kb on - strand, within CCNA_00709at 767.381 kb on - strand, within CCNA_00709at 767.381 kb on - strand, within CCNA_00709at 767.381 kb on - strand, within CCNA_00709at 767.388 kb on - strandat 767.419 kb on - strandat 767.438 kb on + strandat 767.490 kb on + strandat 767.531 kb on - strandat 767.536 kb on + strandat 767.537 kb on + strandat 767.545 kb on - strandat 767.545 kb on - strandat 767.584 kb on + strandat 767.607 kb on - strandat 767.611 kb on + strandat 767.619 kb on - strandat 767.645 kb on + strand, within CCNA_00710at 767.645 kb on + strand, within CCNA_00710at 767.645 kb on + strand, within CCNA_00710at 767.650 kb on + strand, within CCNA_00710at 767.650 kb on + strand, within CCNA_00710at 767.653 kb on - strand, within CCNA_00710at 767.658 kb on - strand, within CCNA_00710at 767.689 kb on - strand, within CCNA_00710at 767.704 kb on + strand, within CCNA_00710at 767.721 kb on - strand, within CCNA_00710at 767.732 kb on + strand, within CCNA_00710at 767.773 kb on + strand, within CCNA_00710at 767.792 kb on + strand, within CCNA_00710at 767.801 kb on - strand, within CCNA_00710at 767.804 kb on + strand, within CCNA_00710at 767.827 kb on - strand, within CCNA_00710at 767.853 kb on - strand, within CCNA_00710at 767.864 kb on + strand, within CCNA_00710at 767.871 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.884 kb on - strand, within CCNA_00710at 767.894 kb on - strand, within CCNA_00710at 767.974 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 768.006 kb on + strand, within CCNA_00710at 768.011 kb on + strand, within CCNA_00710at 768.060 kb on + strand, within CCNA_00710at 768.093 kb on + strand, within CCNA_00710

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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764,189 - -0.3
764,234 - CCNA_00707 0.12 -0.3
764,247 + CCNA_00707 0.13 -0.7
764,262 + CCNA_00707 0.15 -0.7
764,262 + CCNA_00707 0.15 -0.1
764,262 + CCNA_00707 0.15 +1.0
764,262 + CCNA_00707 0.15 -0.4
764,262 + CCNA_00707 0.15 -0.2
764,270 - CCNA_00707 0.15 +0.3
764,270 - CCNA_00707 0.15 -1.2
764,270 - CCNA_00707 0.15 +0.3
764,270 - CCNA_00707 0.15 -2.1
764,270 - CCNA_00707 0.15 +0.3
764,270 - CCNA_00707 0.15 +0.1
764,270 - CCNA_00707 0.15 +0.3
764,270 - CCNA_00707 0.15 +0.5
764,270 - CCNA_00707 0.15 -0.0
764,270 - CCNA_00707 0.15 +1.1
764,270 - CCNA_00707 0.15 +0.4
764,270 - CCNA_00707 0.15 -0.0
764,270 - CCNA_00707 0.15 +0.2
764,289 - CCNA_00707 0.17 -1.0
764,351 - CCNA_00707 0.23 -0.4
764,396 + CCNA_00707 0.27 +0.2
764,417 - CCNA_00707 0.29 +0.4
764,448 + CCNA_00707 0.32 -1.3
764,449 - CCNA_00707 0.32 +0.3
764,458 + CCNA_00707 0.33 +1.6
764,463 + CCNA_00707 0.33 -1.2
764,463 + CCNA_00707 0.33 +0.3
764,466 - CCNA_00707 0.34 -0.8
764,494 + CCNA_00707 0.36 +0.4
764,502 - CCNA_00707 0.37 +0.4
764,529 - CCNA_00707 0.39 +1.3
764,537 + CCNA_00707 0.40 -0.1
764,564 - CCNA_00707 0.43 +0.1
764,584 + CCNA_00707 0.44 +0.2
764,592 + CCNA_00707 0.45 +1.1
764,592 + CCNA_00707 0.45 -0.7
764,600 - CCNA_00707 0.46 +0.5
764,628 - CCNA_00707 0.48 +0.5
764,645 + CCNA_00707 0.50 -0.1
764,730 - CCNA_00707 0.58 +0.1
764,735 - CCNA_00707 0.58 +0.9
764,924 - CCNA_00707 0.76 +1.1
764,958 + CCNA_00707 0.79 +0.4
764,971 - CCNA_00707 0.80 +1.3
764,982 + CCNA_00707 0.81 +0.0
764,990 - CCNA_00707 0.82 +0.5
765,003 + CCNA_00707 0.83 +0.7
765,014 + CCNA_00707 0.84 -1.2
765,075 - CCNA_00707 0.90 +0.3
765,075 - CCNA_00707 0.90 +0.6
765,075 - CCNA_00707 0.90 +0.8
765,135 + -0.4
765,154 - -0.3
765,185 + +0.6
765,207 + -0.6
765,207 + +0.1
765,276 - -1.0
765,279 + +0.1
765,279 + -0.5
765,287 - +0.3
765,434 - CCNA_00708 0.13 +0.8
765,574 - CCNA_00708 0.20 +0.5
765,717 + CCNA_00708 0.28 -0.4
765,778 - CCNA_00708 0.31 +0.2
765,799 + CCNA_00708 0.32 +0.2
765,807 - CCNA_00708 0.32 -0.2
766,141 + CCNA_00708 0.50 +0.8
766,357 - CCNA_00708 0.61 +0.3
766,394 - CCNA_00708 0.63 -0.8
766,481 - CCNA_00708 0.67 -1.2
766,482 - CCNA_00708 0.67 -0.5
766,564 - CCNA_00708 0.72 -0.2
766,993 + -0.2
767,063 - -1.5
767,078 - +0.2
767,078 - +0.3
767,113 - +0.3
767,114 - -0.0
767,127 - +0.5
767,176 - +0.2
767,207 - -0.1
767,230 + -0.5
767,266 + CCNA_00709 0.26 +0.2
767,266 + CCNA_00709 0.26 -0.8
767,266 + CCNA_00709 0.26 -0.4
767,271 + CCNA_00709 0.29 +2.1
767,306 - CCNA_00709 0.48 -0.0
767,314 + CCNA_00709 0.52 +0.4
767,353 - CCNA_00709 0.74 +0.2
767,373 + CCNA_00709 0.85 +0.6
767,373 + CCNA_00709 0.85 +0.2
767,373 + CCNA_00709 0.85 +0.4
767,373 + CCNA_00709 0.85 +0.7
767,379 - CCNA_00709 0.88 +0.3
767,379 - CCNA_00709 0.88 -0.7
767,379 - CCNA_00709 0.88 -0.4
767,381 - CCNA_00709 0.89 +0.5
767,381 - CCNA_00709 0.89 -0.3
767,381 - CCNA_00709 0.89 -0.1
767,381 - CCNA_00709 0.89 -0.9
767,381 - CCNA_00709 0.89 +1.5
767,381 - CCNA_00709 0.89 -0.5
767,388 - -0.3
767,419 - -0.8
767,438 + -0.2
767,490 + -0.2
767,531 - +0.4
767,536 + -1.4
767,537 + -0.6
767,545 - +0.2
767,545 - +0.2
767,584 + +0.9
767,607 - +0.0
767,611 + +1.0
767,619 - -1.0
767,645 + CCNA_00710 0.11 -0.8
767,645 + CCNA_00710 0.11 +1.1
767,645 + CCNA_00710 0.11 +1.0
767,650 + CCNA_00710 0.11 -0.4
767,650 + CCNA_00710 0.11 -0.0
767,653 - CCNA_00710 0.11 +0.0
767,658 - CCNA_00710 0.12 -0.5
767,689 - CCNA_00710 0.14 -0.4
767,704 + CCNA_00710 0.16 +0.4
767,721 - CCNA_00710 0.17 -0.1
767,732 + CCNA_00710 0.18 +3.3
767,773 + CCNA_00710 0.22 -0.3
767,792 + CCNA_00710 0.23 +0.4
767,801 - CCNA_00710 0.24 +0.4
767,804 + CCNA_00710 0.24 -1.0
767,827 - CCNA_00710 0.26 -0.8
767,853 - CCNA_00710 0.28 +0.3
767,864 + CCNA_00710 0.29 -1.4
767,871 - CCNA_00710 0.30 +0.1
767,872 - CCNA_00710 0.30 +0.6
767,872 - CCNA_00710 0.30 -1.3
767,872 - CCNA_00710 0.30 -0.1
767,872 - CCNA_00710 0.30 -0.5
767,872 - CCNA_00710 0.30 -0.1
767,884 - CCNA_00710 0.31 +0.4
767,894 - CCNA_00710 0.32 -1.7
767,974 + CCNA_00710 0.39 -1.3
767,979 + CCNA_00710 0.39 -1.0
767,979 + CCNA_00710 0.39 -1.1
767,979 + CCNA_00710 0.39 -0.5
767,979 + CCNA_00710 0.39 +1.2
767,979 + CCNA_00710 0.39 +0.5
767,987 - CCNA_00710 0.40 -0.3
768,006 + CCNA_00710 0.41 +0.3
768,011 + CCNA_00710 0.42 -0.4
768,060 + CCNA_00710 0.46 -0.5
768,093 + CCNA_00710 0.49 +2.2

Or see this region's nucleotide sequence