Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00669

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00668 and CCNA_00669 overlap by 4 nucleotidesCCNA_00669 and CCNA_00670 overlap by 4 nucleotidesCCNA_00670 and CCNA_00671 are separated by 9 nucleotides CCNA_00668: CCNA_00668 - capsular polysaccharide biosynthesis protein, at 724,701 to 725,753 _00668 CCNA_00669: CCNA_00669 - glycosyltransferase family 99 protein WbsX, at 725,750 to 728,206 _00669 CCNA_00670: CCNA_00670 - ABC-type polysaccharide/polyol phosphate transport system, ATPase component, at 728,203 to 728,955 _00670 CCNA_00671: CCNA_00671 - ABC-type polysaccharide/polyol phosphate export system, permease component, at 728,965 to 729,756 _00671 Position (kb) 725 726 727 728 729Strain fitness (log2 ratio) -2 -1 0 1 2at 724.780 kb on + strandat 724.785 kb on - strandat 724.840 kb on + strand, within CCNA_00668at 724.876 kb on - strand, within CCNA_00668at 724.948 kb on + strand, within CCNA_00668at 724.948 kb on + strand, within CCNA_00668at 724.956 kb on - strand, within CCNA_00668at 724.977 kb on - strand, within CCNA_00668at 725.032 kb on + strand, within CCNA_00668at 725.040 kb on - strand, within CCNA_00668at 725.139 kb on - strand, within CCNA_00668at 725.141 kb on + strand, within CCNA_00668at 725.171 kb on + strand, within CCNA_00668at 725.198 kb on - strand, within CCNA_00668at 725.229 kb on + strand, within CCNA_00668at 725.247 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.358 kb on - strand, within CCNA_00668at 725.359 kb on + strand, within CCNA_00668at 725.367 kb on - strand, within CCNA_00668at 725.382 kb on + strand, within CCNA_00668at 725.466 kb on - strand, within CCNA_00668at 725.466 kb on - strand, within CCNA_00668at 725.476 kb on - strand, within CCNA_00668at 725.551 kb on + strand, within CCNA_00668at 725.564 kb on - strand, within CCNA_00668at 725.664 kb on - strandat 725.692 kb on - strandat 725.697 kb on + strandat 725.704 kb on + strandat 725.705 kb on - strandat 725.705 kb on - strandat 725.755 kb on + strandat 725.815 kb on + strandat 725.840 kb on + strandat 725.840 kb on + strandat 725.840 kb on + strandat 725.845 kb on + strandat 725.848 kb on - strandat 725.848 kb on - strandat 725.848 kb on - strandat 725.994 kb on + strandat 726.004 kb on - strand, within CCNA_00669at 726.004 kb on - strand, within CCNA_00669at 726.089 kb on + strand, within CCNA_00669at 726.089 kb on + strand, within CCNA_00669at 726.094 kb on + strand, within CCNA_00669at 726.120 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.160 kb on + strand, within CCNA_00669at 726.201 kb on - strand, within CCNA_00669at 726.208 kb on + strand, within CCNA_00669at 726.275 kb on - strand, within CCNA_00669at 726.308 kb on + strand, within CCNA_00669at 726.308 kb on + strand, within CCNA_00669at 726.316 kb on - strand, within CCNA_00669at 726.342 kb on + strand, within CCNA_00669at 726.350 kb on - strand, within CCNA_00669at 726.352 kb on + strand, within CCNA_00669at 726.398 kb on + strand, within CCNA_00669at 726.403 kb on + strand, within CCNA_00669at 726.403 kb on + strand, within CCNA_00669at 726.408 kb on + strand, within CCNA_00669at 726.416 kb on - strand, within CCNA_00669at 726.416 kb on - strand, within CCNA_00669at 726.416 kb on - strand, within CCNA_00669at 726.421 kb on + strand, within CCNA_00669at 726.491 kb on + strand, within CCNA_00669at 726.494 kb on - strand, within CCNA_00669at 726.494 kb on - strand, within CCNA_00669at 726.600 kb on - strand, within CCNA_00669at 726.603 kb on + strand, within CCNA_00669at 726.605 kb on + strand, within CCNA_00669at 726.721 kb on - strand, within CCNA_00669at 726.723 kb on + strand, within CCNA_00669at 726.751 kb on - strand, within CCNA_00669at 726.771 kb on + strand, within CCNA_00669at 726.781 kb on + strand, within CCNA_00669at 726.821 kb on + strand, within CCNA_00669at 726.821 kb on + strand, within CCNA_00669at 726.821 kb on + strand, within CCNA_00669at 726.821 kb on + strand, within CCNA_00669at 726.821 kb on + strand, within CCNA_00669at 726.821 kb on + strand, within CCNA_00669at 726.822 kb on + strand, within CCNA_00669at 726.829 kb on - strand, within CCNA_00669at 726.829 kb on - strand, within CCNA_00669at 726.829 kb on - strand, within CCNA_00669at 726.829 kb on - strand, within CCNA_00669at 726.830 kb on - strand, within CCNA_00669at 726.845 kb on + strand, within CCNA_00669at 726.924 kb on - strand, within CCNA_00669at 726.941 kb on - strand, within CCNA_00669at 726.960 kb on + strand, within CCNA_00669at 726.965 kb on - strand, within CCNA_00669at 726.965 kb on - strand, within CCNA_00669at 726.968 kb on - strand, within CCNA_00669at 726.979 kb on - strand, within CCNA_00669at 726.985 kb on + strand, within CCNA_00669at 726.995 kb on - strand, within CCNA_00669at 727.008 kb on + strand, within CCNA_00669at 727.020 kb on + strand, within CCNA_00669at 727.020 kb on + strand, within CCNA_00669at 727.028 kb on - strand, within CCNA_00669at 727.045 kb on - strand, within CCNA_00669at 727.092 kb on - strand, within CCNA_00669at 727.092 kb on - strand, within CCNA_00669at 727.124 kb on + strand, within CCNA_00669at 727.165 kb on - strand, within CCNA_00669at 727.211 kb on - strand, within CCNA_00669at 727.216 kb on - strand, within CCNA_00669at 727.226 kb on - strand, within CCNA_00669at 727.228 kb on + strand, within CCNA_00669at 727.236 kb on - strand, within CCNA_00669at 727.244 kb on - strand, within CCNA_00669at 727.246 kb on + strand, within CCNA_00669at 727.341 kb on + strand, within CCNA_00669at 727.349 kb on - strand, within CCNA_00669at 727.349 kb on - strand, within CCNA_00669at 727.351 kb on + strand, within CCNA_00669at 727.372 kb on - strand, within CCNA_00669at 727.381 kb on + strand, within CCNA_00669at 727.387 kb on + strand, within CCNA_00669at 727.431 kb on + strand, within CCNA_00669at 727.449 kb on + strand, within CCNA_00669at 727.457 kb on - strand, within CCNA_00669at 727.486 kb on - strand, within CCNA_00669at 727.502 kb on - strand, within CCNA_00669at 727.512 kb on + strand, within CCNA_00669at 727.528 kb on + strand, within CCNA_00669at 727.550 kb on - strand, within CCNA_00669at 727.617 kb on - strand, within CCNA_00669at 727.843 kb on - strand, within CCNA_00669at 727.919 kb on + strand, within CCNA_00669at 728.031 kb on - strandat 728.031 kb on - strandat 728.057 kb on - strandat 728.067 kb on + strandat 728.075 kb on - strandat 728.131 kb on - strandat 728.178 kb on + strandat 728.236 kb on + strandat 728.236 kb on + strandat 728.269 kb on + strandat 728.290 kb on + strand, within CCNA_00670at 728.316 kb on + strand, within CCNA_00670at 728.318 kb on - strand, within CCNA_00670at 728.347 kb on - strand, within CCNA_00670at 728.352 kb on + strand, within CCNA_00670at 728.413 kb on - strand, within CCNA_00670at 728.465 kb on - strand, within CCNA_00670at 728.568 kb on - strand, within CCNA_00670at 728.598 kb on + strand, within CCNA_00670at 728.664 kb on - strand, within CCNA_00670at 728.728 kb on - strand, within CCNA_00670at 728.728 kb on - strand, within CCNA_00670at 728.747 kb on - strand, within CCNA_00670at 728.845 kb on - strand, within CCNA_00670at 728.866 kb on + strand, within CCNA_00670at 728.871 kb on + strand, within CCNA_00670at 728.940 kb on - strandat 729.004 kb on - strandat 729.058 kb on + strand, within CCNA_00671at 729.090 kb on - strand, within CCNA_00671at 729.101 kb on + strand, within CCNA_00671at 729.145 kb on - strand, within CCNA_00671at 729.170 kb on + strand, within CCNA_00671at 729.178 kb on - strand, within CCNA_00671at 729.178 kb on - strand, within CCNA_00671

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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724,780 + +1.0
724,785 - -0.2
724,840 + CCNA_00668 0.13 -0.9
724,876 - CCNA_00668 0.17 -0.9
724,948 + CCNA_00668 0.23 -1.2
724,948 + CCNA_00668 0.23 -1.7
724,956 - CCNA_00668 0.24 -0.6
724,977 - CCNA_00668 0.26 -2.4
725,032 + CCNA_00668 0.31 -1.9
725,040 - CCNA_00668 0.32 +1.4
725,139 - CCNA_00668 0.42 -0.6
725,141 + CCNA_00668 0.42 +0.5
725,171 + CCNA_00668 0.45 +1.8
725,198 - CCNA_00668 0.47 -0.7
725,229 + CCNA_00668 0.50 -0.1
725,247 - CCNA_00668 0.52 -0.8
725,259 - CCNA_00668 0.53 -0.2
725,259 - CCNA_00668 0.53 +1.1
725,259 - CCNA_00668 0.53 +0.8
725,358 - CCNA_00668 0.62 -0.7
725,359 + CCNA_00668 0.62 +0.3
725,367 - CCNA_00668 0.63 -0.7
725,382 + CCNA_00668 0.65 -1.4
725,466 - CCNA_00668 0.73 -0.4
725,466 - CCNA_00668 0.73 +0.4
725,476 - CCNA_00668 0.74 +1.5
725,551 + CCNA_00668 0.81 -2.6
725,564 - CCNA_00668 0.82 -1.3
725,664 - +1.8
725,692 - -0.0
725,697 + -1.3
725,704 + +0.0
725,705 - -0.4
725,705 - +0.1
725,755 + +0.2
725,815 + +0.6
725,840 + -0.4
725,840 + +0.8
725,840 + +0.8
725,845 + -0.6
725,848 - -0.5
725,848 - +0.1
725,848 - -0.0
725,994 + +1.5
726,004 - CCNA_00669 0.10 +0.2
726,004 - CCNA_00669 0.10 -0.7
726,089 + CCNA_00669 0.14 -1.3
726,089 + CCNA_00669 0.14 -0.9
726,094 + CCNA_00669 0.14 +1.1
726,120 + CCNA_00669 0.15 +0.3
726,150 + CCNA_00669 0.16 -1.7
726,150 + CCNA_00669 0.16 -0.1
726,150 + CCNA_00669 0.16 -1.4
726,150 + CCNA_00669 0.16 -1.5
726,150 + CCNA_00669 0.16 -0.9
726,158 - CCNA_00669 0.17 -1.1
726,158 - CCNA_00669 0.17 -0.8
726,158 - CCNA_00669 0.17 +0.4
726,158 - CCNA_00669 0.17 +0.9
726,160 + CCNA_00669 0.17 +1.0
726,201 - CCNA_00669 0.18 -1.4
726,208 + CCNA_00669 0.19 +0.2
726,275 - CCNA_00669 0.21 +2.5
726,308 + CCNA_00669 0.23 +0.6
726,308 + CCNA_00669 0.23 +0.2
726,316 - CCNA_00669 0.23 -1.5
726,342 + CCNA_00669 0.24 +1.0
726,350 - CCNA_00669 0.24 -0.7
726,352 + CCNA_00669 0.25 -1.8
726,398 + CCNA_00669 0.26 +0.5
726,403 + CCNA_00669 0.27 -1.0
726,403 + CCNA_00669 0.27 +1.5
726,408 + CCNA_00669 0.27 -1.4
726,416 - CCNA_00669 0.27 +0.5
726,416 - CCNA_00669 0.27 -0.0
726,416 - CCNA_00669 0.27 -1.7
726,421 + CCNA_00669 0.27 -0.6
726,491 + CCNA_00669 0.30 -2.1
726,494 - CCNA_00669 0.30 -0.9
726,494 - CCNA_00669 0.30 -0.2
726,600 - CCNA_00669 0.35 +0.7
726,603 + CCNA_00669 0.35 -0.7
726,605 + CCNA_00669 0.35 -0.0
726,721 - CCNA_00669 0.40 +0.8
726,723 + CCNA_00669 0.40 -0.1
726,751 - CCNA_00669 0.41 -2.2
726,771 + CCNA_00669 0.42 -1.1
726,781 + CCNA_00669 0.42 -0.8
726,821 + CCNA_00669 0.44 -0.5
726,821 + CCNA_00669 0.44 +0.3
726,821 + CCNA_00669 0.44 +0.5
726,821 + CCNA_00669 0.44 +0.1
726,821 + CCNA_00669 0.44 -1.1
726,821 + CCNA_00669 0.44 -0.7
726,822 + CCNA_00669 0.44 -0.4
726,829 - CCNA_00669 0.44 -1.0
726,829 - CCNA_00669 0.44 -1.0
726,829 - CCNA_00669 0.44 +2.1
726,829 - CCNA_00669 0.44 +1.5
726,830 - CCNA_00669 0.44 -1.0
726,845 + CCNA_00669 0.45 -2.3
726,924 - CCNA_00669 0.48 -0.2
726,941 - CCNA_00669 0.48 -0.2
726,960 + CCNA_00669 0.49 -1.1
726,965 - CCNA_00669 0.49 -1.3
726,965 - CCNA_00669 0.49 +0.7
726,968 - CCNA_00669 0.50 -1.9
726,979 - CCNA_00669 0.50 -1.5
726,985 + CCNA_00669 0.50 -0.5
726,995 - CCNA_00669 0.51 +0.7
727,008 + CCNA_00669 0.51 -0.7
727,020 + CCNA_00669 0.52 +0.1
727,020 + CCNA_00669 0.52 -0.7
727,028 - CCNA_00669 0.52 -0.4
727,045 - CCNA_00669 0.53 -1.9
727,092 - CCNA_00669 0.55 +1.5
727,092 - CCNA_00669 0.55 -0.2
727,124 + CCNA_00669 0.56 -0.2
727,165 - CCNA_00669 0.58 +0.6
727,211 - CCNA_00669 0.59 +0.8
727,216 - CCNA_00669 0.60 +1.0
727,226 - CCNA_00669 0.60 -0.9
727,228 + CCNA_00669 0.60 +1.7
727,236 - CCNA_00669 0.60 -1.8
727,244 - CCNA_00669 0.61 -0.9
727,246 + CCNA_00669 0.61 +0.8
727,341 + CCNA_00669 0.65 -0.4
727,349 - CCNA_00669 0.65 -0.5
727,349 - CCNA_00669 0.65 -0.2
727,351 + CCNA_00669 0.65 -0.9
727,372 - CCNA_00669 0.66 +1.0
727,381 + CCNA_00669 0.66 +0.2
727,387 + CCNA_00669 0.67 -1.0
727,431 + CCNA_00669 0.68 -0.0
727,449 + CCNA_00669 0.69 +0.9
727,457 - CCNA_00669 0.69 -0.7
727,486 - CCNA_00669 0.71 +0.5
727,502 - CCNA_00669 0.71 -0.9
727,512 + CCNA_00669 0.72 -1.1
727,528 + CCNA_00669 0.72 -2.3
727,550 - CCNA_00669 0.73 +0.1
727,617 - CCNA_00669 0.76 -0.6
727,843 - CCNA_00669 0.85 +0.8
727,919 + CCNA_00669 0.88 -0.5
728,031 - +0.5
728,031 - +1.8
728,057 - +0.8
728,067 + -0.7
728,075 - -1.1
728,131 - -2.1
728,178 + -0.1
728,236 + +0.4
728,236 + -2.2
728,269 + +1.5
728,290 + CCNA_00670 0.12 +0.8
728,316 + CCNA_00670 0.15 -1.4
728,318 - CCNA_00670 0.15 +0.5
728,347 - CCNA_00670 0.19 +0.8
728,352 + CCNA_00670 0.20 +0.8
728,413 - CCNA_00670 0.28 +0.2
728,465 - CCNA_00670 0.35 +0.8
728,568 - CCNA_00670 0.48 -0.7
728,598 + CCNA_00670 0.52 -0.7
728,664 - CCNA_00670 0.61 +1.2
728,728 - CCNA_00670 0.70 -0.8
728,728 - CCNA_00670 0.70 +1.6
728,747 - CCNA_00670 0.72 +0.1
728,845 - CCNA_00670 0.85 +0.0
728,866 + CCNA_00670 0.88 +0.5
728,871 + CCNA_00670 0.89 -1.0
728,940 - -0.0
729,004 - -0.0
729,058 + CCNA_00671 0.12 +0.8
729,090 - CCNA_00671 0.16 +0.8
729,101 + CCNA_00671 0.17 +0.2
729,145 - CCNA_00671 0.23 -1.0
729,170 + CCNA_00671 0.26 +1.2
729,178 - CCNA_00671 0.27 -1.9
729,178 - CCNA_00671 0.27 +1.7

Or see this region's nucleotide sequence