Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00600

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00598 and CCNA_03887 are separated by 230 nucleotidesCCNA_03887 and CCNA_00600 overlap by 13 nucleotidesCCNA_00600 and CCNA_00601 overlap by 14 nucleotidesCCNA_00601 and CCNA_00602 overlap by 4 nucleotides CCNA_00598: CCNA_00598 - TonB-dependent receptor, at 631,886 to 634,816 _00598 CCNA_03887: CCNA_03887 - hypothetical protein, at 635,047 to 635,673 _03887 CCNA_00600: CCNA_00600 - hypothetical protein, at 635,661 to 636,890 _00600 CCNA_00601: CCNA_00601 - MoxR-like ATPase, at 636,877 to 637,848 _00601 CCNA_00602: CCNA_00602 - von Willebrand factor type A domain protein, at 637,845 to 639,158 _00602 Position (kb) 635 636 637Strain fitness (log2 ratio) -2 -1 0 1 2at 634.666 kb on + strandat 634.678 kb on - strandat 634.715 kb on - strandat 634.721 kb on + strandat 634.721 kb on + strandat 634.728 kb on - strandat 634.729 kb on - strandat 634.729 kb on - strandat 634.734 kb on + strandat 634.734 kb on + strandat 634.734 kb on + strandat 634.742 kb on + strandat 634.742 kb on - strandat 634.775 kb on + strandat 634.780 kb on + strandat 634.782 kb on - strandat 634.788 kb on - strandat 634.821 kb on + strandat 634.829 kb on - strandat 634.831 kb on - strandat 634.837 kb on + strandat 634.870 kb on + strandat 634.894 kb on + strandat 634.901 kb on + strandat 634.901 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.914 kb on - strandat 634.914 kb on - strandat 634.914 kb on - strandat 634.914 kb on - strandat 634.926 kb on + strandat 634.957 kb on - strandat 634.974 kb on + strandat 634.984 kb on + strandat 634.992 kb on - strandat 635.004 kb on - strandat 635.004 kb on - strandat 635.035 kb on + strandat 635.068 kb on + strandat 635.137 kb on + strand, within CCNA_03887at 635.163 kb on - strand, within CCNA_03887at 635.185 kb on + strand, within CCNA_03887at 635.208 kb on + strand, within CCNA_03887at 635.208 kb on + strand, within CCNA_03887at 635.216 kb on - strand, within CCNA_03887at 635.216 kb on - strand, within CCNA_03887at 635.239 kb on - strand, within CCNA_03887at 635.315 kb on + strand, within CCNA_03887at 635.376 kb on + strand, within CCNA_03887at 635.429 kb on + strand, within CCNA_03887at 635.452 kb on - strand, within CCNA_03887at 635.452 kb on - strand, within CCNA_03887at 635.452 kb on - strand, within CCNA_03887at 635.452 kb on - strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.534 kb on - strand, within CCNA_03887at 635.583 kb on + strand, within CCNA_03887at 635.653 kb on + strandat 635.659 kb on + strandat 635.659 kb on + strandat 635.660 kb on - strandat 635.660 kb on - strandat 635.661 kb on - strandat 635.667 kb on - strandat 635.676 kb on - strandat 635.695 kb on + strandat 635.729 kb on + strandat 635.741 kb on - strandat 635.786 kb on + strand, within CCNA_00600at 635.794 kb on - strand, within CCNA_00600at 635.815 kb on - strand, within CCNA_00600at 635.834 kb on + strand, within CCNA_00600at 635.874 kb on - strand, within CCNA_00600at 635.885 kb on + strand, within CCNA_00600at 635.893 kb on - strand, within CCNA_00600at 635.893 kb on - strand, within CCNA_00600at 635.893 kb on - strand, within CCNA_00600at 635.893 kb on - strand, within CCNA_00600at 635.894 kb on - strand, within CCNA_00600at 635.923 kb on + strand, within CCNA_00600at 635.931 kb on + strand, within CCNA_00600at 635.951 kb on - strand, within CCNA_00600at 635.984 kb on + strand, within CCNA_00600at 635.986 kb on - strand, within CCNA_00600at 636.045 kb on + strand, within CCNA_00600at 636.053 kb on - strand, within CCNA_00600at 636.069 kb on + strand, within CCNA_00600at 636.079 kb on + strand, within CCNA_00600at 636.082 kb on - strand, within CCNA_00600at 636.100 kb on + strand, within CCNA_00600at 636.108 kb on - strand, within CCNA_00600at 636.108 kb on - strand, within CCNA_00600at 636.125 kb on - strand, within CCNA_00600at 636.125 kb on - strand, within CCNA_00600at 636.126 kb on - strand, within CCNA_00600at 636.146 kb on + strand, within CCNA_00600at 636.146 kb on + strand, within CCNA_00600at 636.146 kb on + strand, within CCNA_00600at 636.154 kb on - strand, within CCNA_00600at 636.161 kb on + strand, within CCNA_00600at 636.161 kb on - strand, within CCNA_00600at 636.190 kb on - strand, within CCNA_00600at 636.190 kb on - strand, within CCNA_00600at 636.200 kb on - strand, within CCNA_00600at 636.220 kb on + strand, within CCNA_00600at 636.220 kb on + strand, within CCNA_00600at 636.228 kb on - strand, within CCNA_00600at 636.234 kb on + strand, within CCNA_00600at 636.255 kb on + strand, within CCNA_00600at 636.263 kb on - strand, within CCNA_00600at 636.272 kb on + strand, within CCNA_00600at 636.272 kb on + strand, within CCNA_00600at 636.272 kb on + strand, within CCNA_00600at 636.273 kb on + strand, within CCNA_00600at 636.281 kb on - strand, within CCNA_00600at 636.301 kb on + strand, within CCNA_00600at 636.307 kb on - strand, within CCNA_00600at 636.307 kb on - strand, within CCNA_00600at 636.358 kb on - strand, within CCNA_00600at 636.397 kb on - strand, within CCNA_00600at 636.488 kb on - strand, within CCNA_00600at 636.495 kb on + strand, within CCNA_00600at 636.503 kb on - strand, within CCNA_00600at 636.508 kb on - strand, within CCNA_00600at 636.582 kb on + strand, within CCNA_00600at 636.603 kb on + strand, within CCNA_00600at 636.645 kb on - strand, within CCNA_00600at 636.659 kb on + strand, within CCNA_00600at 636.662 kb on - strand, within CCNA_00600at 636.679 kb on - strand, within CCNA_00600at 636.715 kb on + strand, within CCNA_00600at 636.715 kb on + strand, within CCNA_00600at 636.741 kb on + strand, within CCNA_00600at 636.763 kb on + strand, within CCNA_00600at 636.847 kb on + strandat 636.847 kb on + strandat 636.847 kb on + strandat 636.855 kb on - strandat 636.855 kb on - strandat 636.855 kb on - strandat 636.855 kb on - strandat 636.875 kb on - strandat 636.875 kb on - strandat 636.899 kb on - strandat 636.927 kb on + strandat 636.948 kb on + strandat 636.958 kb on + strandat 636.958 kb on + strandat 636.971 kb on - strandat 636.994 kb on - strand, within CCNA_00601at 637.038 kb on + strand, within CCNA_00601at 637.038 kb on + strand, within CCNA_00601at 637.048 kb on + strand, within CCNA_00601at 637.054 kb on + strand, within CCNA_00601at 637.099 kb on - strand, within CCNA_00601at 637.114 kb on - strand, within CCNA_00601at 637.173 kb on - strand, within CCNA_00601at 637.184 kb on + strand, within CCNA_00601at 637.184 kb on + strand, within CCNA_00601at 637.191 kb on + strand, within CCNA_00601at 637.192 kb on - strand, within CCNA_00601at 637.199 kb on - strand, within CCNA_00601at 637.201 kb on - strand, within CCNA_00601at 637.231 kb on - strand, within CCNA_00601at 637.234 kb on + strand, within CCNA_00601at 637.254 kb on + strand, within CCNA_00601at 637.254 kb on + strand, within CCNA_00601at 637.254 kb on + strand, within CCNA_00601at 637.278 kb on + strand, within CCNA_00601at 637.286 kb on - strand, within CCNA_00601at 637.303 kb on - strand, within CCNA_00601at 637.316 kb on + strand, within CCNA_00601at 637.334 kb on - strand, within CCNA_00601at 637.353 kb on + strand, within CCNA_00601at 637.381 kb on + strand, within CCNA_00601at 637.381 kb on + strand, within CCNA_00601at 637.389 kb on - strand, within CCNA_00601at 637.389 kb on - strand, within CCNA_00601at 637.389 kb on - strand, within CCNA_00601at 637.398 kb on + strand, within CCNA_00601at 637.398 kb on + strand, within CCNA_00601at 637.406 kb on - strand, within CCNA_00601at 637.408 kb on + strand, within CCNA_00601at 637.416 kb on - strand, within CCNA_00601at 637.416 kb on - strand, within CCNA_00601at 637.422 kb on - strand, within CCNA_00601at 637.434 kb on + strand, within CCNA_00601at 637.462 kb on - strand, within CCNA_00601at 637.488 kb on - strand, within CCNA_00601at 637.507 kb on + strand, within CCNA_00601at 637.507 kb on + strand, within CCNA_00601at 637.507 kb on + strand, within CCNA_00601at 637.507 kb on + strand, within CCNA_00601at 637.515 kb on - strand, within CCNA_00601at 637.515 kb on - strand, within CCNA_00601at 637.558 kb on - strand, within CCNA_00601at 637.565 kb on + strand, within CCNA_00601at 637.604 kb on - strand, within CCNA_00601at 637.652 kb on + strand, within CCNA_00601at 637.662 kb on + strand, within CCNA_00601at 637.670 kb on - strand, within CCNA_00601at 637.695 kb on - strand, within CCNA_00601at 637.703 kb on + strand, within CCNA_00601at 637.729 kb on - strand, within CCNA_00601at 637.756 kb on + strandat 637.756 kb on + strandat 637.757 kb on + strandat 637.764 kb on - strandat 637.765 kb on - strandat 637.821 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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634,666 + +0.4
634,678 - -1.1
634,715 - -2.2
634,721 + +0.6
634,721 + -2.6
634,728 - -0.3
634,729 - -0.9
634,729 - -0.7
634,734 + +0.7
634,734 + -0.9
634,734 + +0.1
634,742 + -0.7
634,742 - -0.1
634,775 + +0.4
634,780 + +0.1
634,782 - -2.4
634,788 - -0.1
634,821 + -0.7
634,829 - -0.4
634,831 - -0.2
634,837 + +0.3
634,870 + +0.4
634,894 + +0.2
634,901 + -0.9
634,901 + +0.4
634,906 + -0.8
634,906 + -0.5
634,906 + -0.0
634,906 + +0.4
634,906 + -0.9
634,914 - +0.5
634,914 - -0.1
634,914 - +1.5
634,914 - -1.0
634,926 + +0.2
634,957 - -0.6
634,974 + -0.4
634,984 + +0.6
634,992 - -0.0
635,004 - -0.3
635,004 - -0.5
635,035 + -0.2
635,068 + +0.0
635,137 + CCNA_03887 0.14 +0.1
635,163 - CCNA_03887 0.19 -0.0
635,185 + CCNA_03887 0.22 +0.2
635,208 + CCNA_03887 0.26 +0.1
635,208 + CCNA_03887 0.26 +0.7
635,216 - CCNA_03887 0.27 -0.4
635,216 - CCNA_03887 0.27 -0.4
635,239 - CCNA_03887 0.31 -0.8
635,315 + CCNA_03887 0.43 -0.3
635,376 + CCNA_03887 0.52 +1.2
635,429 + CCNA_03887 0.61 +0.9
635,452 - CCNA_03887 0.65 +0.5
635,452 - CCNA_03887 0.65 -0.7
635,452 - CCNA_03887 0.65 -0.3
635,452 - CCNA_03887 0.65 -0.3
635,469 + CCNA_03887 0.67 +0.6
635,469 + CCNA_03887 0.67 -0.0
635,469 + CCNA_03887 0.67 +0.1
635,469 + CCNA_03887 0.67 +0.0
635,469 + CCNA_03887 0.67 -0.2
635,469 + CCNA_03887 0.67 +0.4
635,477 - CCNA_03887 0.69 -0.1
635,477 - CCNA_03887 0.69 -0.8
635,477 - CCNA_03887 0.69 +0.9
635,477 - CCNA_03887 0.69 -0.5
635,477 - CCNA_03887 0.69 -0.5
635,487 + CCNA_03887 0.70 +0.1
635,487 + CCNA_03887 0.70 +0.3
635,487 + CCNA_03887 0.70 +0.4
635,487 + CCNA_03887 0.70 -0.6
635,487 + CCNA_03887 0.70 -0.4
635,487 + CCNA_03887 0.70 +0.1
635,487 + CCNA_03887 0.70 -0.5
635,487 + CCNA_03887 0.70 -0.0
635,487 + CCNA_03887 0.70 +0.6
635,487 + CCNA_03887 0.70 +0.4
635,487 + CCNA_03887 0.70 -0.3
635,487 + CCNA_03887 0.70 +1.3
635,487 + CCNA_03887 0.70 +0.2
635,487 + CCNA_03887 0.70 +0.2
635,487 + CCNA_03887 0.70 +0.6
635,487 + CCNA_03887 0.70 +0.4
635,495 - CCNA_03887 0.71 -1.9
635,495 - CCNA_03887 0.71 +1.8
635,495 - CCNA_03887 0.71 -0.4
635,495 - CCNA_03887 0.71 +0.1
635,495 - CCNA_03887 0.71 +1.2
635,495 - CCNA_03887 0.71 -0.5
635,495 - CCNA_03887 0.71 +0.7
635,495 - CCNA_03887 0.71 -1.0
635,495 - CCNA_03887 0.71 -0.4
635,495 - CCNA_03887 0.71 -0.9
635,495 - CCNA_03887 0.71 -1.9
635,534 - CCNA_03887 0.78 -0.1
635,583 + CCNA_03887 0.85 +0.8
635,653 + +0.6
635,659 + -0.2
635,659 + +0.9
635,660 - -0.0
635,660 - -1.0
635,661 - -0.2
635,667 - -0.6
635,676 - -1.8
635,695 + +1.3
635,729 + -0.0
635,741 - +0.1
635,786 + CCNA_00600 0.10 +0.9
635,794 - CCNA_00600 0.11 -1.6
635,815 - CCNA_00600 0.13 -1.0
635,834 + CCNA_00600 0.14 -0.0
635,874 - CCNA_00600 0.17 -0.2
635,885 + CCNA_00600 0.18 +0.5
635,893 - CCNA_00600 0.19 +0.2
635,893 - CCNA_00600 0.19 +0.1
635,893 - CCNA_00600 0.19 -0.0
635,893 - CCNA_00600 0.19 +1.6
635,894 - CCNA_00600 0.19 +0.8
635,923 + CCNA_00600 0.21 -0.4
635,931 + CCNA_00600 0.22 -0.2
635,951 - CCNA_00600 0.24 -0.9
635,984 + CCNA_00600 0.26 -0.0
635,986 - CCNA_00600 0.26 -0.0
636,045 + CCNA_00600 0.31 +0.2
636,053 - CCNA_00600 0.32 -1.4
636,069 + CCNA_00600 0.33 -0.3
636,079 + CCNA_00600 0.34 +1.0
636,082 - CCNA_00600 0.34 -1.6
636,100 + CCNA_00600 0.36 +0.6
636,108 - CCNA_00600 0.36 +2.2
636,108 - CCNA_00600 0.36 +0.5
636,125 - CCNA_00600 0.38 +1.4
636,125 - CCNA_00600 0.38 -1.3
636,126 - CCNA_00600 0.38 -0.4
636,146 + CCNA_00600 0.39 -0.6
636,146 + CCNA_00600 0.39 -0.4
636,146 + CCNA_00600 0.39 -0.2
636,154 - CCNA_00600 0.40 +0.0
636,161 + CCNA_00600 0.41 +0.3
636,161 - CCNA_00600 0.41 +1.2
636,190 - CCNA_00600 0.43 -0.5
636,190 - CCNA_00600 0.43 -0.8
636,200 - CCNA_00600 0.44 +1.0
636,220 + CCNA_00600 0.45 -0.1
636,220 + CCNA_00600 0.45 -0.0
636,228 - CCNA_00600 0.46 -0.0
636,234 + CCNA_00600 0.47 -0.3
636,255 + CCNA_00600 0.48 -1.5
636,263 - CCNA_00600 0.49 +0.4
636,272 + CCNA_00600 0.50 -1.0
636,272 + CCNA_00600 0.50 +0.8
636,272 + CCNA_00600 0.50 -2.1
636,273 + CCNA_00600 0.50 -0.1
636,281 - CCNA_00600 0.50 +0.0
636,301 + CCNA_00600 0.52 -0.0
636,307 - CCNA_00600 0.53 +0.1
636,307 - CCNA_00600 0.53 +0.4
636,358 - CCNA_00600 0.57 +0.3
636,397 - CCNA_00600 0.60 -0.1
636,488 - CCNA_00600 0.67 +0.0
636,495 + CCNA_00600 0.68 -1.1
636,503 - CCNA_00600 0.68 -0.9
636,508 - CCNA_00600 0.69 -0.3
636,582 + CCNA_00600 0.75 +2.0
636,603 + CCNA_00600 0.77 +1.9
636,645 - CCNA_00600 0.80 -0.0
636,659 + CCNA_00600 0.81 +0.2
636,662 - CCNA_00600 0.81 -0.4
636,679 - CCNA_00600 0.83 +0.7
636,715 + CCNA_00600 0.86 +0.1
636,715 + CCNA_00600 0.86 +0.8
636,741 + CCNA_00600 0.88 -0.8
636,763 + CCNA_00600 0.90 +0.1
636,847 + +0.1
636,847 + -0.0
636,847 + +0.2
636,855 - -2.0
636,855 - +1.3
636,855 - -0.2
636,855 - +0.2
636,875 - +0.2
636,875 - -0.3
636,899 - +0.1
636,927 + +0.5
636,948 + +0.7
636,958 + +0.4
636,958 + +2.4
636,971 - +0.8
636,994 - CCNA_00601 0.12 -0.3
637,038 + CCNA_00601 0.17 +0.3
637,038 + CCNA_00601 0.17 -0.7
637,048 + CCNA_00601 0.18 -1.2
637,054 + CCNA_00601 0.18 -0.0
637,099 - CCNA_00601 0.23 +0.1
637,114 - CCNA_00601 0.24 +0.5
637,173 - CCNA_00601 0.30 +0.0
637,184 + CCNA_00601 0.32 +0.8
637,184 + CCNA_00601 0.32 +0.7
637,191 + CCNA_00601 0.32 -0.2
637,192 - CCNA_00601 0.32 -0.5
637,199 - CCNA_00601 0.33 -0.3
637,201 - CCNA_00601 0.33 -0.8
637,231 - CCNA_00601 0.36 -0.4
637,234 + CCNA_00601 0.37 +0.0
637,254 + CCNA_00601 0.39 -0.4
637,254 + CCNA_00601 0.39 +0.1
637,254 + CCNA_00601 0.39 +0.5
637,278 + CCNA_00601 0.41 -0.8
637,286 - CCNA_00601 0.42 +0.0
637,303 - CCNA_00601 0.44 -1.3
637,316 + CCNA_00601 0.45 +0.6
637,334 - CCNA_00601 0.47 -0.9
637,353 + CCNA_00601 0.49 +1.5
637,381 + CCNA_00601 0.52 +0.2
637,381 + CCNA_00601 0.52 -0.0
637,389 - CCNA_00601 0.53 -0.0
637,389 - CCNA_00601 0.53 +0.8
637,389 - CCNA_00601 0.53 -0.6
637,398 + CCNA_00601 0.54 +1.1
637,398 + CCNA_00601 0.54 +0.6
637,406 - CCNA_00601 0.54 -0.5
637,408 + CCNA_00601 0.55 +0.6
637,416 - CCNA_00601 0.55 -0.8
637,416 - CCNA_00601 0.55 +0.2
637,422 - CCNA_00601 0.56 +0.8
637,434 + CCNA_00601 0.57 +0.4
637,462 - CCNA_00601 0.60 +0.4
637,488 - CCNA_00601 0.63 +0.3
637,507 + CCNA_00601 0.65 -0.2
637,507 + CCNA_00601 0.65 +0.7
637,507 + CCNA_00601 0.65 -0.8
637,507 + CCNA_00601 0.65 +0.8
637,515 - CCNA_00601 0.66 +1.8
637,515 - CCNA_00601 0.66 +0.4
637,558 - CCNA_00601 0.70 +1.2
637,565 + CCNA_00601 0.71 +0.4
637,604 - CCNA_00601 0.75 +0.2
637,652 + CCNA_00601 0.80 +0.3
637,662 + CCNA_00601 0.81 -0.4
637,670 - CCNA_00601 0.82 +1.0
637,695 - CCNA_00601 0.84 -0.7
637,703 + CCNA_00601 0.85 +1.0
637,729 - CCNA_00601 0.88 -0.7
637,756 + -0.0
637,756 + +0.2
637,757 + +0.2
637,764 - -0.0
637,765 - +0.1
637,821 + +0.3

Or see this region's nucleotide sequence