Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00555

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00553 and CCNA_00554 are separated by 65 nucleotidesCCNA_00554 and CCNA_00555 are separated by 72 nucleotidesCCNA_00555 and CCNA_00556 are separated by 84 nucleotides CCNA_00553: CCNA_00553 - hydroxyacylglutathione hydrolase, at 569,423 to 570,172 _00553 CCNA_00554: CCNA_00554 - methyltransferase, at 570,238 to 571,044 _00554 CCNA_00555: CCNA_00555 - nitrogen regulatory protein P-II, at 571,117 to 571,461 _00555 CCNA_00556: CCNA_00556 - phospholipase D, at 571,546 to 573,063 _00556 Position (kb) 571 572Strain fitness (log2 ratio) -2 -1 0 1 2at 570.169 kb on + strandat 570.177 kb on - strandat 570.177 kb on - strandat 570.177 kb on - strandat 570.185 kb on + strandat 570.203 kb on + strandat 570.211 kb on - strandat 570.250 kb on - strandat 570.265 kb on + strandat 570.267 kb on + strandat 570.267 kb on + strandat 570.288 kb on - strandat 570.326 kb on - strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.369 kb on - strand, within CCNA_00554at 570.369 kb on - strand, within CCNA_00554at 570.389 kb on - strand, within CCNA_00554at 570.433 kb on + strand, within CCNA_00554at 570.445 kb on + strand, within CCNA_00554at 570.457 kb on - strand, within CCNA_00554at 570.510 kb on + strand, within CCNA_00554at 570.512 kb on + strand, within CCNA_00554at 570.518 kb on - strand, within CCNA_00554at 570.518 kb on - strand, within CCNA_00554at 570.631 kb on + strand, within CCNA_00554at 570.649 kb on - strand, within CCNA_00554at 570.656 kb on - strand, within CCNA_00554at 570.680 kb on + strand, within CCNA_00554at 570.700 kb on - strand, within CCNA_00554at 570.743 kb on - strand, within CCNA_00554at 570.752 kb on + strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.797 kb on - strand, within CCNA_00554at 570.805 kb on - strand, within CCNA_00554at 570.806 kb on + strand, within CCNA_00554at 570.807 kb on - strand, within CCNA_00554at 570.821 kb on + strand, within CCNA_00554at 570.821 kb on + strand, within CCNA_00554at 570.824 kb on - strand, within CCNA_00554at 570.824 kb on - strand, within CCNA_00554at 570.824 kb on - strand, within CCNA_00554at 570.824 kb on - strand, within CCNA_00554at 570.827 kb on + strand, within CCNA_00554at 570.829 kb on - strand, within CCNA_00554at 570.871 kb on + strand, within CCNA_00554at 570.891 kb on + strand, within CCNA_00554at 570.894 kb on - strand, within CCNA_00554at 570.945 kb on - strand, within CCNA_00554at 570.947 kb on + strand, within CCNA_00554at 570.950 kb on - strand, within CCNA_00554at 570.950 kb on - strand, within CCNA_00554at 570.955 kb on - strand, within CCNA_00554at 570.996 kb on + strandat 570.996 kb on + strandat 570.999 kb on - strandat 570.999 kb on - strandat 571.004 kb on - strandat 571.026 kb on + strandat 571.031 kb on + strandat 571.031 kb on + strandat 571.031 kb on + strandat 571.039 kb on - strandat 571.039 kb on - strandat 571.041 kb on - strandat 571.075 kb on + strandat 571.102 kb on + strandat 571.102 kb on + strandat 571.115 kb on + strandat 571.151 kb on + strandat 571.164 kb on + strand, within CCNA_00555at 571.190 kb on + strand, within CCNA_00555at 571.190 kb on + strand, within CCNA_00555at 571.198 kb on - strand, within CCNA_00555at 571.198 kb on - strand, within CCNA_00555at 571.198 kb on - strand, within CCNA_00555at 571.198 kb on - strand, within CCNA_00555at 571.219 kb on + strand, within CCNA_00555at 571.236 kb on + strand, within CCNA_00555at 571.244 kb on - strand, within CCNA_00555at 571.249 kb on + strand, within CCNA_00555at 571.280 kb on - strand, within CCNA_00555at 571.284 kb on + strand, within CCNA_00555at 571.284 kb on + strand, within CCNA_00555at 571.284 kb on + strand, within CCNA_00555at 571.317 kb on - strand, within CCNA_00555at 571.317 kb on - strand, within CCNA_00555at 571.335 kb on + strand, within CCNA_00555at 571.350 kb on - strand, within CCNA_00555at 571.353 kb on - strand, within CCNA_00555at 571.380 kb on + strand, within CCNA_00555at 571.388 kb on - strand, within CCNA_00555at 571.389 kb on - strand, within CCNA_00555at 571.399 kb on + strand, within CCNA_00555at 571.434 kb on + strandat 571.509 kb on + strandat 571.529 kb on + strandat 571.546 kb on - strandat 571.546 kb on - strandat 571.548 kb on + strandat 571.590 kb on - strandat 571.599 kb on + strandat 571.647 kb on - strandat 571.696 kb on + strandat 571.698 kb on - strand, within CCNA_00556at 571.698 kb on - strand, within CCNA_00556at 571.704 kb on - strand, within CCNA_00556at 571.728 kb on + strand, within CCNA_00556at 571.728 kb on + strand, within CCNA_00556at 571.730 kb on - strand, within CCNA_00556at 571.730 kb on - strand, within CCNA_00556at 571.736 kb on - strand, within CCNA_00556at 571.736 kb on - strand, within CCNA_00556at 571.738 kb on + strand, within CCNA_00556at 571.741 kb on - strand, within CCNA_00556at 571.741 kb on - strand, within CCNA_00556at 571.830 kb on - strand, within CCNA_00556at 571.833 kb on + strand, within CCNA_00556at 571.841 kb on - strand, within CCNA_00556at 571.878 kb on - strand, within CCNA_00556at 571.883 kb on + strand, within CCNA_00556at 571.920 kb on + strand, within CCNA_00556at 571.925 kb on + strand, within CCNA_00556at 571.934 kb on - strand, within CCNA_00556at 571.974 kb on - strand, within CCNA_00556at 571.974 kb on - strand, within CCNA_00556at 572.004 kb on + strand, within CCNA_00556at 572.012 kb on - strand, within CCNA_00556at 572.012 kb on - strand, within CCNA_00556at 572.012 kb on - strand, within CCNA_00556at 572.012 kb on - strand, within CCNA_00556at 572.024 kb on + strand, within CCNA_00556at 572.024 kb on + strand, within CCNA_00556at 572.039 kb on + strand, within CCNA_00556at 572.052 kb on + strand, within CCNA_00556at 572.086 kb on + strand, within CCNA_00556at 572.091 kb on + strand, within CCNA_00556at 572.091 kb on + strand, within CCNA_00556at 572.091 kb on + strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.113 kb on + strand, within CCNA_00556at 572.148 kb on - strand, within CCNA_00556at 572.221 kb on - strand, within CCNA_00556at 572.221 kb on - strand, within CCNA_00556at 572.322 kb on + strand, within CCNA_00556at 572.329 kb on + strand, within CCNA_00556at 572.331 kb on + strand, within CCNA_00556at 572.354 kb on + strand, within CCNA_00556at 572.413 kb on + strand, within CCNA_00556at 572.424 kb on + strand, within CCNA_00556at 572.444 kb on + strand, within CCNA_00556at 572.459 kb on - strand, within CCNA_00556

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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570,169 + -0.3
570,177 - +1.2
570,177 - -0.6
570,177 - +0.7
570,185 + -0.1
570,203 + +1.0
570,211 - +0.5
570,250 - -1.0
570,265 + +0.2
570,267 + +0.4
570,267 + +0.5
570,288 - -0.5
570,326 - CCNA_00554 0.11 +0.1
570,327 + CCNA_00554 0.11 +0.3
570,327 + CCNA_00554 0.11 +0.7
570,327 + CCNA_00554 0.11 +0.2
570,335 - CCNA_00554 0.12 +0.3
570,335 - CCNA_00554 0.12 +0.1
570,369 - CCNA_00554 0.16 -0.2
570,369 - CCNA_00554 0.16 +0.1
570,389 - CCNA_00554 0.19 +1.1
570,433 + CCNA_00554 0.24 +0.8
570,445 + CCNA_00554 0.26 +0.1
570,457 - CCNA_00554 0.27 +0.2
570,510 + CCNA_00554 0.34 -0.2
570,512 + CCNA_00554 0.34 +0.2
570,518 - CCNA_00554 0.35 +0.0
570,518 - CCNA_00554 0.35 +0.0
570,631 + CCNA_00554 0.49 +1.2
570,649 - CCNA_00554 0.51 -0.5
570,656 - CCNA_00554 0.52 -0.1
570,680 + CCNA_00554 0.55 +0.0
570,700 - CCNA_00554 0.57 +0.4
570,743 - CCNA_00554 0.63 -0.5
570,752 + CCNA_00554 0.64 +0.1
570,760 - CCNA_00554 0.65 -0.8
570,760 - CCNA_00554 0.65 +0.5
570,760 - CCNA_00554 0.65 -0.0
570,760 - CCNA_00554 0.65 -0.5
570,760 - CCNA_00554 0.65 +0.4
570,797 - CCNA_00554 0.69 -0.2
570,805 - CCNA_00554 0.70 -0.3
570,806 + CCNA_00554 0.70 +0.3
570,807 - CCNA_00554 0.71 -0.2
570,821 + CCNA_00554 0.72 +0.7
570,821 + CCNA_00554 0.72 -0.1
570,824 - CCNA_00554 0.73 -0.2
570,824 - CCNA_00554 0.73 +0.2
570,824 - CCNA_00554 0.73 -0.2
570,824 - CCNA_00554 0.73 -0.6
570,827 + CCNA_00554 0.73 +0.6
570,829 - CCNA_00554 0.73 +0.2
570,871 + CCNA_00554 0.78 +0.1
570,891 + CCNA_00554 0.81 +0.3
570,894 - CCNA_00554 0.81 -0.3
570,945 - CCNA_00554 0.88 -0.0
570,947 + CCNA_00554 0.88 +0.5
570,950 - CCNA_00554 0.88 -0.0
570,950 - CCNA_00554 0.88 -0.6
570,955 - CCNA_00554 0.89 -0.2
570,996 + +0.1
570,996 + +0.0
570,999 - +0.1
570,999 - +0.5
571,004 - -0.4
571,026 + +0.0
571,031 + -0.6
571,031 + -0.7
571,031 + +1.4
571,039 - -0.2
571,039 - -0.6
571,041 - +0.8
571,075 + -0.3
571,102 + -0.5
571,102 + -0.2
571,115 + +0.3
571,151 + -0.5
571,164 + CCNA_00555 0.14 +0.4
571,190 + CCNA_00555 0.21 -0.2
571,190 + CCNA_00555 0.21 +0.4
571,198 - CCNA_00555 0.23 +1.0
571,198 - CCNA_00555 0.23 -1.5
571,198 - CCNA_00555 0.23 -0.2
571,198 - CCNA_00555 0.23 +0.2
571,219 + CCNA_00555 0.30 +0.0
571,236 + CCNA_00555 0.34 -0.1
571,244 - CCNA_00555 0.37 -0.1
571,249 + CCNA_00555 0.38 +0.2
571,280 - CCNA_00555 0.47 -2.0
571,284 + CCNA_00555 0.48 +0.1
571,284 + CCNA_00555 0.48 -0.5
571,284 + CCNA_00555 0.48 +0.7
571,317 - CCNA_00555 0.58 +0.1
571,317 - CCNA_00555 0.58 -0.6
571,335 + CCNA_00555 0.63 +0.2
571,350 - CCNA_00555 0.68 -0.8
571,353 - CCNA_00555 0.68 +0.2
571,380 + CCNA_00555 0.76 +0.4
571,388 - CCNA_00555 0.79 +0.2
571,389 - CCNA_00555 0.79 -0.1
571,399 + CCNA_00555 0.82 +0.1
571,434 + +0.1
571,509 + +0.6
571,529 + +1.0
571,546 - -0.1
571,546 - -0.5
571,548 + +1.6
571,590 - +0.1
571,599 + -0.0
571,647 - +0.9
571,696 + +0.1
571,698 - CCNA_00556 0.10 +0.7
571,698 - CCNA_00556 0.10 +0.1
571,704 - CCNA_00556 0.10 -0.8
571,728 + CCNA_00556 0.12 -0.1
571,728 + CCNA_00556 0.12 +0.2
571,730 - CCNA_00556 0.12 +0.0
571,730 - CCNA_00556 0.12 -0.3
571,736 - CCNA_00556 0.13 -1.2
571,736 - CCNA_00556 0.13 +0.3
571,738 + CCNA_00556 0.13 -1.4
571,741 - CCNA_00556 0.13 +0.4
571,741 - CCNA_00556 0.13 +0.1
571,830 - CCNA_00556 0.19 +1.0
571,833 + CCNA_00556 0.19 -0.7
571,841 - CCNA_00556 0.19 +0.2
571,878 - CCNA_00556 0.22 +0.4
571,883 + CCNA_00556 0.22 -0.4
571,920 + CCNA_00556 0.25 -1.4
571,925 + CCNA_00556 0.25 +0.1
571,934 - CCNA_00556 0.26 -0.1
571,974 - CCNA_00556 0.28 -0.1
571,974 - CCNA_00556 0.28 -1.5
572,004 + CCNA_00556 0.30 -0.1
572,012 - CCNA_00556 0.31 -0.7
572,012 - CCNA_00556 0.31 -2.0
572,012 - CCNA_00556 0.31 +0.2
572,012 - CCNA_00556 0.31 -0.2
572,024 + CCNA_00556 0.31 -0.2
572,024 + CCNA_00556 0.31 +0.5
572,039 + CCNA_00556 0.32 -0.2
572,052 + CCNA_00556 0.33 +0.1
572,086 + CCNA_00556 0.36 +0.4
572,091 + CCNA_00556 0.36 -0.5
572,091 + CCNA_00556 0.36 -0.5
572,091 + CCNA_00556 0.36 -1.1
572,099 - CCNA_00556 0.36 +1.8
572,099 - CCNA_00556 0.36 +0.4
572,099 - CCNA_00556 0.36 -0.2
572,099 - CCNA_00556 0.36 -0.5
572,099 - CCNA_00556 0.36 +0.1
572,099 - CCNA_00556 0.36 +0.1
572,099 - CCNA_00556 0.36 -2.1
572,113 + CCNA_00556 0.37 +0.5
572,148 - CCNA_00556 0.40 -1.2
572,221 - CCNA_00556 0.44 +0.1
572,221 - CCNA_00556 0.44 +1.6
572,322 + CCNA_00556 0.51 +0.5
572,329 + CCNA_00556 0.52 -0.7
572,331 + CCNA_00556 0.52 -0.6
572,354 + CCNA_00556 0.53 -0.5
572,413 + CCNA_00556 0.57 -0.2
572,424 + CCNA_00556 0.58 +0.5
572,444 + CCNA_00556 0.59 -1.2
572,459 - CCNA_00556 0.60 -0.3

Or see this region's nucleotide sequence