Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00552

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00550 and CCNA_00551 are separated by 207 nucleotidesCCNA_00551 and CCNA_00552 are separated by 255 nucleotidesCCNA_00552 and CCNA_00553 overlap by 4 nucleotidesCCNA_00553 and CCNA_00554 are separated by 65 nucleotides CCNA_00550: CCNA_00550 - LacI-family transcriptional regulator, at 567,006 to 568,052 _00550 CCNA_00551: CCNA_00551 - hypothetical protein, at 568,260 to 568,700 _00551 CCNA_00552: CCNA_00552 - cupin superfamily protein, at 568,956 to 569,426 _00552 CCNA_00553: CCNA_00553 - hydroxyacylglutathione hydrolase, at 569,423 to 570,172 _00553 CCNA_00554: CCNA_00554 - methyltransferase, at 570,238 to 571,044 _00554 Position (kb) 568 569 570Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 568.003 kb on + strandat 568.016 kb on - strandat 568.067 kb on + strandat 568.122 kb on + strandat 568.132 kb on + strandat 568.186 kb on + strandat 568.233 kb on + strandat 568.241 kb on - strandat 568.246 kb on + strandat 568.269 kb on + strandat 568.292 kb on - strandat 568.305 kb on + strand, within CCNA_00551at 568.305 kb on + strand, within CCNA_00551at 568.311 kb on + strand, within CCNA_00551at 568.319 kb on - strand, within CCNA_00551at 568.321 kb on + strand, within CCNA_00551at 568.334 kb on - strand, within CCNA_00551at 568.340 kb on - strand, within CCNA_00551at 568.342 kb on + strand, within CCNA_00551at 568.361 kb on - strand, within CCNA_00551at 568.395 kb on + strand, within CCNA_00551at 568.402 kb on + strand, within CCNA_00551at 568.402 kb on + strand, within CCNA_00551at 568.403 kb on - strand, within CCNA_00551at 568.410 kb on - strand, within CCNA_00551at 568.450 kb on - strand, within CCNA_00551at 568.457 kb on + strand, within CCNA_00551at 568.495 kb on - strand, within CCNA_00551at 568.550 kb on + strand, within CCNA_00551at 568.558 kb on - strand, within CCNA_00551at 568.596 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.608 kb on + strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.633 kb on + strand, within CCNA_00551at 568.634 kb on - strand, within CCNA_00551at 568.691 kb on + strandat 568.691 kb on + strandat 568.699 kb on - strandat 568.699 kb on - strandat 568.699 kb on - strandat 568.699 kb on - strandat 568.699 kb on - strandat 568.699 kb on - strandat 568.758 kb on - strandat 568.785 kb on + strandat 568.857 kb on - strandat 568.866 kb on + strandat 568.879 kb on - strandat 568.884 kb on + strandat 568.888 kb on + strandat 568.896 kb on - strandat 568.896 kb on - strandat 568.913 kb on + strandat 568.918 kb on + strandat 568.921 kb on - strandat 568.926 kb on - strandat 568.926 kb on - strandat 568.930 kb on + strandat 568.970 kb on - strandat 568.972 kb on + strandat 568.980 kb on - strandat 568.980 kb on - strandat 569.039 kb on + strand, within CCNA_00552at 569.042 kb on - strand, within CCNA_00552at 569.073 kb on + strand, within CCNA_00552at 569.080 kb on + strand, within CCNA_00552at 569.094 kb on - strand, within CCNA_00552at 569.117 kb on + strand, within CCNA_00552at 569.117 kb on + strand, within CCNA_00552at 569.117 kb on + strand, within CCNA_00552at 569.125 kb on - strand, within CCNA_00552at 569.125 kb on - strand, within CCNA_00552at 569.125 kb on - strand, within CCNA_00552at 569.129 kb on + strand, within CCNA_00552at 569.132 kb on + strand, within CCNA_00552at 569.137 kb on - strand, within CCNA_00552at 569.205 kb on + strand, within CCNA_00552at 569.205 kb on + strand, within CCNA_00552at 569.213 kb on - strand, within CCNA_00552at 569.226 kb on + strand, within CCNA_00552at 569.226 kb on + strand, within CCNA_00552at 569.234 kb on - strand, within CCNA_00552at 569.236 kb on - strand, within CCNA_00552at 569.238 kb on + strand, within CCNA_00552at 569.238 kb on + strand, within CCNA_00552at 569.241 kb on - strand, within CCNA_00552at 569.241 kb on - strand, within CCNA_00552at 569.267 kb on - strand, within CCNA_00552at 569.279 kb on - strand, within CCNA_00552at 569.334 kb on - strand, within CCNA_00552at 569.359 kb on - strand, within CCNA_00552at 569.396 kb on + strandat 569.402 kb on + strandat 569.404 kb on - strandat 569.404 kb on - strandat 569.404 kb on - strandat 569.410 kb on - strandat 569.428 kb on + strandat 569.436 kb on - strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.493 kb on - strandat 569.498 kb on - strand, within CCNA_00553at 569.508 kb on - strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.602 kb on + strand, within CCNA_00553at 569.626 kb on - strand, within CCNA_00553at 569.655 kb on + strand, within CCNA_00553at 569.655 kb on + strand, within CCNA_00553at 569.663 kb on - strand, within CCNA_00553at 569.680 kb on - strand, within CCNA_00553at 569.712 kb on + strand, within CCNA_00553at 569.726 kb on + strand, within CCNA_00553at 569.739 kb on + strand, within CCNA_00553at 569.747 kb on - strand, within CCNA_00553at 569.759 kb on + strand, within CCNA_00553at 569.759 kb on + strand, within CCNA_00553at 569.767 kb on - strand, within CCNA_00553at 569.877 kb on + strand, within CCNA_00553at 569.881 kb on + strand, within CCNA_00553at 569.881 kb on + strand, within CCNA_00553at 569.889 kb on - strand, within CCNA_00553at 569.901 kb on + strand, within CCNA_00553at 569.906 kb on + strand, within CCNA_00553at 569.906 kb on + strand, within CCNA_00553at 569.914 kb on - strand, within CCNA_00553at 569.990 kb on - strand, within CCNA_00553at 570.012 kb on + strand, within CCNA_00553at 570.016 kb on + strand, within CCNA_00553at 570.057 kb on - strand, within CCNA_00553at 570.077 kb on - strand, within CCNA_00553at 570.095 kb on - strand, within CCNA_00553at 570.107 kb on - strandat 570.169 kb on + strandat 570.177 kb on - strandat 570.177 kb on - strandat 570.177 kb on - strandat 570.185 kb on + strandat 570.203 kb on + strandat 570.211 kb on - strandat 570.250 kb on - strandat 570.265 kb on + strandat 570.267 kb on + strandat 570.267 kb on + strandat 570.288 kb on - strandat 570.326 kb on - strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.369 kb on - strand, within CCNA_00554at 570.369 kb on - strand, within CCNA_00554at 570.389 kb on - strand, within CCNA_00554

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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568,003 + +0.4
568,016 - +0.2
568,067 + +0.6
568,122 + -0.8
568,132 + +0.1
568,186 + +1.0
568,233 + -0.9
568,241 - -0.3
568,246 + -0.0
568,269 + -0.8
568,292 - -0.2
568,305 + CCNA_00551 0.10 +0.2
568,305 + CCNA_00551 0.10 +0.2
568,311 + CCNA_00551 0.12 -1.5
568,319 - CCNA_00551 0.13 +0.5
568,321 + CCNA_00551 0.14 +0.5
568,334 - CCNA_00551 0.17 +0.3
568,340 - CCNA_00551 0.18 -0.5
568,342 + CCNA_00551 0.19 +0.4
568,361 - CCNA_00551 0.23 +0.4
568,395 + CCNA_00551 0.31 -1.4
568,402 + CCNA_00551 0.32 -0.4
568,402 + CCNA_00551 0.32 -0.9
568,403 - CCNA_00551 0.32 -0.3
568,410 - CCNA_00551 0.34 +0.8
568,450 - CCNA_00551 0.43 +0.2
568,457 + CCNA_00551 0.45 +0.7
568,495 - CCNA_00551 0.53 +1.0
568,550 + CCNA_00551 0.66 +1.2
568,558 - CCNA_00551 0.68 +0.6
568,596 + CCNA_00551 0.76 +0.1
568,601 + CCNA_00551 0.77 +0.7
568,601 + CCNA_00551 0.77 -0.7
568,601 + CCNA_00551 0.77 -0.2
568,601 + CCNA_00551 0.77 +0.2
568,601 + CCNA_00551 0.77 -0.7
568,608 + CCNA_00551 0.79 +1.0
568,609 - CCNA_00551 0.79 +0.6
568,609 - CCNA_00551 0.79 +0.0
568,609 - CCNA_00551 0.79 -0.1
568,609 - CCNA_00551 0.79 -0.9
568,609 - CCNA_00551 0.79 -1.3
568,609 - CCNA_00551 0.79 +0.7
568,633 + CCNA_00551 0.85 -0.9
568,634 - CCNA_00551 0.85 -0.6
568,691 + -1.5
568,691 + +0.1
568,699 - +1.1
568,699 - +0.3
568,699 - -0.1
568,699 - -0.2
568,699 - +0.1
568,699 - -0.4
568,758 - -0.6
568,785 + -0.7
568,857 - +0.0
568,866 + -0.3
568,879 - -0.1
568,884 + -1.0
568,888 + +0.1
568,896 - -0.0
568,896 - -0.3
568,913 + +0.2
568,918 + -0.6
568,921 - +0.3
568,926 - -0.5
568,926 - -0.6
568,930 + +1.1
568,970 - +0.6
568,972 + +0.5
568,980 - -0.1
568,980 - -0.5
569,039 + CCNA_00552 0.18 -0.1
569,042 - CCNA_00552 0.18 -2.1
569,073 + CCNA_00552 0.25 -1.7
569,080 + CCNA_00552 0.26 +0.4
569,094 - CCNA_00552 0.29 +0.3
569,117 + CCNA_00552 0.34 +0.0
569,117 + CCNA_00552 0.34 +0.3
569,117 + CCNA_00552 0.34 +0.0
569,125 - CCNA_00552 0.36 -0.3
569,125 - CCNA_00552 0.36 +0.4
569,125 - CCNA_00552 0.36 +0.4
569,129 + CCNA_00552 0.37 +1.0
569,132 + CCNA_00552 0.37 -0.1
569,137 - CCNA_00552 0.38 +0.3
569,205 + CCNA_00552 0.53 -1.3
569,205 + CCNA_00552 0.53 +0.2
569,213 - CCNA_00552 0.55 -0.2
569,226 + CCNA_00552 0.57 +0.1
569,226 + CCNA_00552 0.57 -0.8
569,234 - CCNA_00552 0.59 +0.9
569,236 - CCNA_00552 0.59 -0.9
569,238 + CCNA_00552 0.60 -0.7
569,238 + CCNA_00552 0.60 -1.8
569,241 - CCNA_00552 0.61 +1.0
569,241 - CCNA_00552 0.61 -0.4
569,267 - CCNA_00552 0.66 +0.5
569,279 - CCNA_00552 0.69 -0.2
569,334 - CCNA_00552 0.80 +0.2
569,359 - CCNA_00552 0.86 +0.2
569,396 + +0.1
569,402 + -0.4
569,404 - -1.5
569,404 - +0.2
569,404 - +0.9
569,410 - -0.1
569,428 + -1.5
569,436 - +0.3
569,438 + -0.6
569,438 + +0.8
569,438 + +0.9
569,438 + +0.6
569,438 + +0.9
569,446 - +0.5
569,446 - +0.6
569,446 - +0.4
569,446 - +0.6
569,446 - +0.2
569,446 - +0.6
569,493 - -0.3
569,498 - CCNA_00553 0.10 -0.3
569,508 - CCNA_00553 0.11 +0.4
569,589 + CCNA_00553 0.22 -0.3
569,589 + CCNA_00553 0.22 -1.3
569,589 + CCNA_00553 0.22 -0.5
569,589 + CCNA_00553 0.22 +0.7
569,597 - CCNA_00553 0.23 -0.3
569,597 - CCNA_00553 0.23 -2.9
569,597 - CCNA_00553 0.23 +0.4
569,602 + CCNA_00553 0.24 +0.7
569,626 - CCNA_00553 0.27 +0.4
569,655 + CCNA_00553 0.31 +0.2
569,655 + CCNA_00553 0.31 +0.0
569,663 - CCNA_00553 0.32 -0.2
569,680 - CCNA_00553 0.34 +0.4
569,712 + CCNA_00553 0.39 -0.1
569,726 + CCNA_00553 0.40 -1.0
569,739 + CCNA_00553 0.42 +0.7
569,747 - CCNA_00553 0.43 -0.7
569,759 + CCNA_00553 0.45 -0.6
569,759 + CCNA_00553 0.45 +0.3
569,767 - CCNA_00553 0.46 -0.5
569,877 + CCNA_00553 0.61 -0.7
569,881 + CCNA_00553 0.61 -1.1
569,881 + CCNA_00553 0.61 +1.4
569,889 - CCNA_00553 0.62 +0.1
569,901 + CCNA_00553 0.64 -0.2
569,906 + CCNA_00553 0.64 -0.5
569,906 + CCNA_00553 0.64 +0.1
569,914 - CCNA_00553 0.65 -0.2
569,990 - CCNA_00553 0.76 +0.5
570,012 + CCNA_00553 0.79 +0.1
570,016 + CCNA_00553 0.79 -1.0
570,057 - CCNA_00553 0.85 -0.7
570,077 - CCNA_00553 0.87 +2.7
570,095 - CCNA_00553 0.90 +1.2
570,107 - -0.1
570,169 + -0.3
570,177 - +1.2
570,177 - -0.6
570,177 - +0.7
570,185 + -0.1
570,203 + +1.0
570,211 - +0.5
570,250 - -1.0
570,265 + +0.2
570,267 + +0.4
570,267 + +0.5
570,288 - -0.5
570,326 - CCNA_00554 0.11 +0.1
570,327 + CCNA_00554 0.11 +0.3
570,327 + CCNA_00554 0.11 +0.7
570,327 + CCNA_00554 0.11 +0.2
570,335 - CCNA_00554 0.12 +0.3
570,335 - CCNA_00554 0.12 +0.1
570,369 - CCNA_00554 0.16 -0.2
570,369 - CCNA_00554 0.16 +0.1
570,389 - CCNA_00554 0.19 +1.1

Or see this region's nucleotide sequence