Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00519

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00517 and CCNA_00518 are separated by 87 nucleotidesCCNA_00518 and CCNA_00519 are separated by 157 nucleotidesCCNA_00519 and CCNA_00520 are separated by 230 nucleotides CCNA_00517: CCNA_00517 - peptidyl-tRNA hydrolase, at 532,435 to 533,052 _00517 CCNA_00518: CCNA_00518 - LSU ribosomal protein L25P, at 533,140 to 533,733 _00518 CCNA_00519: CCNA_00519 - hypothetical protein, at 533,891 to 534,967 _00519 CCNA_00520: CCNA_00520 - ribose-phosphate pyrophosphokinase, at 535,198 to 536,136 _00520 Position (kb) 533 534 535Strain fitness (log2 ratio) -2 -1 0 1 2at 533.099 kb on - strandat 533.112 kb on - strandat 533.129 kb on - strandat 533.223 kb on + strand, within CCNA_00518at 533.266 kb on - strand, within CCNA_00518at 533.363 kb on - strand, within CCNA_00518at 533.437 kb on + strand, within CCNA_00518at 533.452 kb on + strand, within CCNA_00518at 533.859 kb on + strandat 533.877 kb on - strandat 533.921 kb on + strandat 533.921 kb on + strandat 533.921 kb on + strandat 533.922 kb on + strandat 533.922 kb on + strandat 533.929 kb on - strandat 533.929 kb on - strandat 534.004 kb on + strand, within CCNA_00519at 534.021 kb on + strand, within CCNA_00519at 534.052 kb on + strand, within CCNA_00519at 534.056 kb on + strand, within CCNA_00519at 534.056 kb on + strand, within CCNA_00519at 534.056 kb on + strand, within CCNA_00519at 534.060 kb on - strand, within CCNA_00519at 534.067 kb on + strand, within CCNA_00519at 534.118 kb on - strand, within CCNA_00519at 534.125 kb on - strand, within CCNA_00519at 534.126 kb on - strand, within CCNA_00519at 534.165 kb on - strand, within CCNA_00519at 534.165 kb on - strand, within CCNA_00519at 534.229 kb on + strand, within CCNA_00519at 534.250 kb on + strand, within CCNA_00519at 534.280 kb on + strand, within CCNA_00519at 534.288 kb on - strand, within CCNA_00519at 534.288 kb on - strand, within CCNA_00519at 534.288 kb on - strand, within CCNA_00519at 534.349 kb on + strand, within CCNA_00519at 534.357 kb on - strand, within CCNA_00519at 534.376 kb on - strand, within CCNA_00519at 534.412 kb on + strand, within CCNA_00519at 534.420 kb on - strand, within CCNA_00519at 534.420 kb on - strand, within CCNA_00519at 534.420 kb on - strand, within CCNA_00519at 534.437 kb on + strand, within CCNA_00519at 534.468 kb on + strand, within CCNA_00519at 534.476 kb on - strand, within CCNA_00519at 534.479 kb on + strand, within CCNA_00519at 534.486 kb on - strand, within CCNA_00519at 534.492 kb on - strand, within CCNA_00519at 534.501 kb on - strand, within CCNA_00519at 534.509 kb on + strand, within CCNA_00519at 534.542 kb on - strand, within CCNA_00519at 534.544 kb on - strand, within CCNA_00519at 534.557 kb on - strand, within CCNA_00519at 534.580 kb on - strand, within CCNA_00519at 534.595 kb on + strand, within CCNA_00519at 534.658 kb on - strand, within CCNA_00519at 534.663 kb on + strand, within CCNA_00519at 534.671 kb on - strand, within CCNA_00519at 534.676 kb on - strand, within CCNA_00519at 534.706 kb on - strand, within CCNA_00519at 534.726 kb on + strand, within CCNA_00519at 534.726 kb on + strand, within CCNA_00519at 534.734 kb on - strand, within CCNA_00519at 534.734 kb on - strand, within CCNA_00519at 534.734 kb on - strand, within CCNA_00519at 534.745 kb on + strand, within CCNA_00519at 534.755 kb on + strand, within CCNA_00519at 534.803 kb on - strand, within CCNA_00519at 534.803 kb on - strand, within CCNA_00519at 534.826 kb on - strand, within CCNA_00519at 534.826 kb on - strand, within CCNA_00519at 534.838 kb on - strand, within CCNA_00519at 534.882 kb on + strandat 534.888 kb on + strandat 534.999 kb on + strandat 535.000 kb on + strandat 535.084 kb on - strandat 535.131 kb on + strandat 535.139 kb on - strandat 535.161 kb on - strandat 535.161 kb on - strandat 535.187 kb on + strandat 535.187 kb on + strandat 535.189 kb on - strandat 535.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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533,099 - +0.1
533,112 - +0.6
533,129 - +0.9
533,223 + CCNA_00518 0.14 -0.8
533,266 - CCNA_00518 0.21 -0.0
533,363 - CCNA_00518 0.38 -0.1
533,437 + CCNA_00518 0.50 -0.8
533,452 + CCNA_00518 0.53 -1.0
533,859 + -1.1
533,877 - +0.6
533,921 + -0.8
533,921 + -0.1
533,921 + +1.4
533,922 + -0.3
533,922 + -1.8
533,929 - +0.4
533,929 - +0.6
534,004 + CCNA_00519 0.10 +0.3
534,021 + CCNA_00519 0.12 +0.7
534,052 + CCNA_00519 0.15 -0.9
534,056 + CCNA_00519 0.15 -0.1
534,056 + CCNA_00519 0.15 -0.3
534,056 + CCNA_00519 0.15 -0.1
534,060 - CCNA_00519 0.16 -0.1
534,067 + CCNA_00519 0.16 -0.4
534,118 - CCNA_00519 0.21 -0.1
534,125 - CCNA_00519 0.22 +0.2
534,126 - CCNA_00519 0.22 -1.3
534,165 - CCNA_00519 0.25 +1.8
534,165 - CCNA_00519 0.25 -0.5
534,229 + CCNA_00519 0.31 -0.8
534,250 + CCNA_00519 0.33 +0.6
534,280 + CCNA_00519 0.36 -0.9
534,288 - CCNA_00519 0.37 -1.4
534,288 - CCNA_00519 0.37 -0.1
534,288 - CCNA_00519 0.37 -1.3
534,349 + CCNA_00519 0.43 +1.7
534,357 - CCNA_00519 0.43 -0.4
534,376 - CCNA_00519 0.45 -0.2
534,412 + CCNA_00519 0.48 -1.1
534,420 - CCNA_00519 0.49 -0.7
534,420 - CCNA_00519 0.49 -0.1
534,420 - CCNA_00519 0.49 +0.3
534,437 + CCNA_00519 0.51 -0.3
534,468 + CCNA_00519 0.54 -0.0
534,476 - CCNA_00519 0.54 +0.3
534,479 + CCNA_00519 0.55 -0.3
534,486 - CCNA_00519 0.55 -0.8
534,492 - CCNA_00519 0.56 -0.8
534,501 - CCNA_00519 0.57 +0.1
534,509 + CCNA_00519 0.57 -0.9
534,542 - CCNA_00519 0.60 -0.1
534,544 - CCNA_00519 0.61 -1.2
534,557 - CCNA_00519 0.62 -0.2
534,580 - CCNA_00519 0.64 -0.3
534,595 + CCNA_00519 0.65 +0.4
534,658 - CCNA_00519 0.71 -0.5
534,663 + CCNA_00519 0.72 -2.2
534,671 - CCNA_00519 0.72 -0.3
534,676 - CCNA_00519 0.73 -0.4
534,706 - CCNA_00519 0.76 +0.7
534,726 + CCNA_00519 0.78 -0.3
534,726 + CCNA_00519 0.78 -0.3
534,734 - CCNA_00519 0.78 +1.1
534,734 - CCNA_00519 0.78 +1.4
534,734 - CCNA_00519 0.78 -1.1
534,745 + CCNA_00519 0.79 +0.1
534,755 + CCNA_00519 0.80 -1.0
534,803 - CCNA_00519 0.85 -0.3
534,803 - CCNA_00519 0.85 -1.4
534,826 - CCNA_00519 0.87 -0.9
534,826 - CCNA_00519 0.87 -0.3
534,838 - CCNA_00519 0.88 -0.8
534,882 + +2.3
534,888 + +0.1
534,999 + +0.5
535,000 + +0.7
535,084 - +0.1
535,131 + -0.2
535,139 - +0.8
535,161 - -0.9
535,161 - -0.1
535,187 + -0.8
535,187 + +0.9
535,189 - +0.3
535,191 + +1.0

Or see this region's nucleotide sequence