Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00502

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00501 and CCNA_00502 are separated by 56 nucleotidesCCNA_00502 and CCNA_00503 are separated by 98 nucleotidesCCNA_00503 and CCNA_00504 overlap by 4 nucleotides CCNA_00501: CCNA_00501 - glucosyltransferase, at 516,738 to 518,417 _00501 CCNA_00502: CCNA_00502 - glycosyl transferase family protein, at 518,474 to 519,211 _00502 CCNA_00503: CCNA_00503 - hypothetical protein, at 519,310 to 519,732 _00503 CCNA_00504: CCNA_00504 - 23S rRNA methyltransferase, at 519,729 to 520,193 _00504 Position (kb) 518 519 520Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 517.474 kb on + strand, within CCNA_00501at 517.482 kb on - strand, within CCNA_00501at 517.482 kb on - strand, within CCNA_00501at 517.529 kb on - strand, within CCNA_00501at 517.530 kb on - strand, within CCNA_00501at 517.545 kb on + strand, within CCNA_00501at 517.553 kb on - strand, within CCNA_00501at 517.591 kb on - strand, within CCNA_00501at 517.608 kb on - strand, within CCNA_00501at 517.648 kb on + strand, within CCNA_00501at 517.655 kb on + strand, within CCNA_00501at 517.702 kb on + strand, within CCNA_00501at 517.702 kb on + strand, within CCNA_00501at 517.702 kb on + strand, within CCNA_00501at 517.702 kb on + strand, within CCNA_00501at 517.702 kb on + strand, within CCNA_00501at 517.705 kb on - strand, within CCNA_00501at 517.707 kb on + strand, within CCNA_00501at 517.707 kb on + strand, within CCNA_00501at 517.707 kb on + strand, within CCNA_00501at 517.707 kb on + strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.712 kb on + strand, within CCNA_00501at 517.715 kb on - strand, within CCNA_00501at 517.715 kb on - strand, within CCNA_00501at 517.715 kb on - strand, within CCNA_00501at 517.734 kb on - strand, within CCNA_00501at 517.744 kb on - strand, within CCNA_00501at 517.749 kb on + strand, within CCNA_00501at 517.752 kb on - strand, within CCNA_00501at 517.752 kb on - strand, within CCNA_00501at 517.752 kb on - strand, within CCNA_00501at 517.792 kb on + strand, within CCNA_00501at 517.800 kb on - strand, within CCNA_00501at 517.800 kb on - strand, within CCNA_00501at 517.800 kb on - strand, within CCNA_00501at 517.834 kb on + strand, within CCNA_00501at 517.867 kb on - strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.921 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.980 kb on - strand, within CCNA_00501at 518.107 kb on - strand, within CCNA_00501at 518.112 kb on - strand, within CCNA_00501at 518.131 kb on + strand, within CCNA_00501at 518.136 kb on + strand, within CCNA_00501at 518.136 kb on + strand, within CCNA_00501at 518.139 kb on - strand, within CCNA_00501at 518.144 kb on - strand, within CCNA_00501at 518.147 kb on + strand, within CCNA_00501at 518.152 kb on + strand, within CCNA_00501at 518.155 kb on - strand, within CCNA_00501at 518.160 kb on - strand, within CCNA_00501at 518.160 kb on - strand, within CCNA_00501at 518.160 kb on - strand, within CCNA_00501at 518.272 kb on - strandat 518.309 kb on - strandat 518.341 kb on - strandat 518.354 kb on + strandat 518.379 kb on + strandat 518.523 kb on + strandat 518.533 kb on + strandat 518.533 kb on + strandat 518.541 kb on - strandat 518.552 kb on - strand, within CCNA_00502at 518.595 kb on - strand, within CCNA_00502at 518.702 kb on + strand, within CCNA_00502at 518.774 kb on + strand, within CCNA_00502at 518.774 kb on + strand, within CCNA_00502at 518.835 kb on + strand, within CCNA_00502at 518.835 kb on + strand, within CCNA_00502at 518.835 kb on + strand, within CCNA_00502at 518.845 kb on + strand, within CCNA_00502at 518.868 kb on - strand, within CCNA_00502at 518.887 kb on + strand, within CCNA_00502at 518.907 kb on + strand, within CCNA_00502at 518.907 kb on + strand, within CCNA_00502at 518.907 kb on + strand, within CCNA_00502at 518.937 kb on - strand, within CCNA_00502at 518.962 kb on + strand, within CCNA_00502at 518.969 kb on - strand, within CCNA_00502at 519.003 kb on + strand, within CCNA_00502at 519.008 kb on + strand, within CCNA_00502at 519.011 kb on - strand, within CCNA_00502at 519.025 kb on + strand, within CCNA_00502at 519.033 kb on + strand, within CCNA_00502at 519.058 kb on - strand, within CCNA_00502at 519.071 kb on - strand, within CCNA_00502at 519.093 kb on + strand, within CCNA_00502at 519.101 kb on - strand, within CCNA_00502at 519.116 kb on + strand, within CCNA_00502at 519.119 kb on - strand, within CCNA_00502at 519.124 kb on - strand, within CCNA_00502at 519.124 kb on - strand, within CCNA_00502at 519.206 kb on + strandat 519.206 kb on + strandat 519.206 kb on + strandat 519.206 kb on + strandat 519.206 kb on + strandat 519.206 kb on + strandat 519.206 kb on + strandat 519.206 kb on + strandat 519.214 kb on - strandat 519.214 kb on - strandat 519.214 kb on - strandat 519.217 kb on + strandat 519.230 kb on + strandat 519.238 kb on - strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.266 kb on - strandat 519.267 kb on - strandat 519.267 kb on - strandat 519.267 kb on - strandat 519.365 kb on + strand, within CCNA_00503at 519.365 kb on + strand, within CCNA_00503at 519.373 kb on - strand, within CCNA_00503at 519.373 kb on - strand, within CCNA_00503at 519.383 kb on - strand, within CCNA_00503at 519.411 kb on + strand, within CCNA_00503at 519.431 kb on - strand, within CCNA_00503at 519.479 kb on - strand, within CCNA_00503at 519.480 kb on + strand, within CCNA_00503at 519.483 kb on + strand, within CCNA_00503at 519.488 kb on - strand, within CCNA_00503at 519.584 kb on + strand, within CCNA_00503at 519.592 kb on - strand, within CCNA_00503at 519.618 kb on - strand, within CCNA_00503at 519.640 kb on - strand, within CCNA_00503at 519.641 kb on + strand, within CCNA_00503at 519.647 kb on + strand, within CCNA_00503at 519.689 kb on + strand, within CCNA_00503at 519.774 kb on - strandat 519.784 kb on - strand, within CCNA_00504at 519.815 kb on + strand, within CCNA_00504at 519.823 kb on - strand, within CCNA_00504at 519.823 kb on - strand, within CCNA_00504at 519.836 kb on + strand, within CCNA_00504at 519.902 kb on + strand, within CCNA_00504at 519.910 kb on - strand, within CCNA_00504at 519.947 kb on + strand, within CCNA_00504at 519.960 kb on + strand, within CCNA_00504at 519.967 kb on + strand, within CCNA_00504at 520.020 kb on - strand, within CCNA_00504at 520.041 kb on + strand, within CCNA_00504at 520.047 kb on + strand, within CCNA_00504at 520.047 kb on + strand, within CCNA_00504at 520.050 kb on - strand, within CCNA_00504at 520.055 kb on - strand, within CCNA_00504at 520.055 kb on - strand, within CCNA_00504at 520.055 kb on - strand, within CCNA_00504at 520.070 kb on - strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.107 kb on + strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.126 kb on - strand, within CCNA_00504at 520.136 kb on + strand, within CCNA_00504

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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517,474 + CCNA_00501 0.44 -1.7
517,482 - CCNA_00501 0.44 -1.8
517,482 - CCNA_00501 0.44 +0.3
517,529 - CCNA_00501 0.47 +1.4
517,530 - CCNA_00501 0.47 +1.6
517,545 + CCNA_00501 0.48 -1.2
517,553 - CCNA_00501 0.49 +0.1
517,591 - CCNA_00501 0.51 +0.2
517,608 - CCNA_00501 0.52 -0.5
517,648 + CCNA_00501 0.54 -0.6
517,655 + CCNA_00501 0.55 -0.3
517,702 + CCNA_00501 0.57 -0.3
517,702 + CCNA_00501 0.57 -0.4
517,702 + CCNA_00501 0.57 +1.4
517,702 + CCNA_00501 0.57 -1.1
517,702 + CCNA_00501 0.57 +0.7
517,705 - CCNA_00501 0.58 -1.1
517,707 + CCNA_00501 0.58 -1.6
517,707 + CCNA_00501 0.58 +0.1
517,707 + CCNA_00501 0.58 +0.7
517,707 + CCNA_00501 0.58 +1.1
517,710 - CCNA_00501 0.58 +0.7
517,710 - CCNA_00501 0.58 +1.1
517,710 - CCNA_00501 0.58 -0.7
517,710 - CCNA_00501 0.58 -0.7
517,710 - CCNA_00501 0.58 -1.3
517,710 - CCNA_00501 0.58 -0.9
517,710 - CCNA_00501 0.58 -1.8
517,710 - CCNA_00501 0.58 +0.6
517,710 - CCNA_00501 0.58 +1.4
517,712 + CCNA_00501 0.58 -0.5
517,715 - CCNA_00501 0.58 +1.5
517,715 - CCNA_00501 0.58 -2.2
517,715 - CCNA_00501 0.58 -2.0
517,734 - CCNA_00501 0.59 -0.1
517,744 - CCNA_00501 0.60 +0.7
517,749 + CCNA_00501 0.60 -0.7
517,752 - CCNA_00501 0.60 +0.4
517,752 - CCNA_00501 0.60 -0.3
517,752 - CCNA_00501 0.60 +0.9
517,792 + CCNA_00501 0.63 -0.1
517,800 - CCNA_00501 0.63 +1.2
517,800 - CCNA_00501 0.63 +0.5
517,800 - CCNA_00501 0.63 +1.9
517,834 + CCNA_00501 0.65 -0.2
517,867 - CCNA_00501 0.67 +1.7
517,903 + CCNA_00501 0.69 -0.2
517,903 + CCNA_00501 0.69 +1.1
517,903 + CCNA_00501 0.69 -0.9
517,903 + CCNA_00501 0.69 -0.3
517,903 + CCNA_00501 0.69 -0.9
517,903 + CCNA_00501 0.69 -2.0
517,903 + CCNA_00501 0.69 -1.1
517,903 + CCNA_00501 0.69 +0.8
517,903 + CCNA_00501 0.69 -1.2
517,911 - CCNA_00501 0.70 -1.4
517,911 - CCNA_00501 0.70 -0.6
517,911 - CCNA_00501 0.70 +0.2
517,911 - CCNA_00501 0.70 -0.4
517,911 - CCNA_00501 0.70 -0.4
517,911 - CCNA_00501 0.70 +0.1
517,911 - CCNA_00501 0.70 +0.2
517,911 - CCNA_00501 0.70 -1.0
517,911 - CCNA_00501 0.70 +2.3
517,911 - CCNA_00501 0.70 -1.1
517,918 + CCNA_00501 0.70 +0.8
517,918 + CCNA_00501 0.70 -0.9
517,918 + CCNA_00501 0.70 -1.0
517,918 + CCNA_00501 0.70 -0.8
517,918 + CCNA_00501 0.70 -0.5
517,918 + CCNA_00501 0.70 -0.4
517,918 + CCNA_00501 0.70 +1.1
517,918 + CCNA_00501 0.70 +1.4
517,921 - CCNA_00501 0.70 +0.6
517,926 - CCNA_00501 0.71 +0.5
517,926 - CCNA_00501 0.71 +2.1
517,926 - CCNA_00501 0.71 -0.8
517,926 - CCNA_00501 0.71 +0.4
517,926 - CCNA_00501 0.71 +1.4
517,926 - CCNA_00501 0.71 -0.1
517,926 - CCNA_00501 0.71 -0.4
517,926 - CCNA_00501 0.71 +0.5
517,926 - CCNA_00501 0.71 -1.1
517,926 - CCNA_00501 0.71 -0.8
517,980 - CCNA_00501 0.74 -0.4
518,107 - CCNA_00501 0.81 +0.9
518,112 - CCNA_00501 0.82 +1.7
518,131 + CCNA_00501 0.83 +0.5
518,136 + CCNA_00501 0.83 -1.9
518,136 + CCNA_00501 0.83 +1.4
518,139 - CCNA_00501 0.83 +1.5
518,144 - CCNA_00501 0.84 -0.7
518,147 + CCNA_00501 0.84 -2.1
518,152 + CCNA_00501 0.84 +1.1
518,155 - CCNA_00501 0.84 -0.4
518,160 - CCNA_00501 0.85 -1.0
518,160 - CCNA_00501 0.85 +0.7
518,160 - CCNA_00501 0.85 -0.6
518,272 - +1.7
518,309 - +0.1
518,341 - +2.7
518,354 + +0.3
518,379 + -1.3
518,523 + -0.5
518,533 + +0.7
518,533 + -0.8
518,541 - +0.1
518,552 - CCNA_00502 0.11 +0.4
518,595 - CCNA_00502 0.16 -1.0
518,702 + CCNA_00502 0.31 -1.8
518,774 + CCNA_00502 0.41 +2.4
518,774 + CCNA_00502 0.41 +1.4
518,835 + CCNA_00502 0.49 -0.1
518,835 + CCNA_00502 0.49 -0.5
518,835 + CCNA_00502 0.49 -2.1
518,845 + CCNA_00502 0.50 -0.8
518,868 - CCNA_00502 0.53 -1.7
518,887 + CCNA_00502 0.56 +0.7
518,907 + CCNA_00502 0.59 -2.4
518,907 + CCNA_00502 0.59 -0.1
518,907 + CCNA_00502 0.59 +0.1
518,937 - CCNA_00502 0.63 -0.8
518,962 + CCNA_00502 0.66 -1.0
518,969 - CCNA_00502 0.67 -1.3
519,003 + CCNA_00502 0.72 -1.0
519,008 + CCNA_00502 0.72 -0.6
519,011 - CCNA_00502 0.73 +0.4
519,025 + CCNA_00502 0.75 -0.1
519,033 + CCNA_00502 0.76 +1.1
519,058 - CCNA_00502 0.79 +0.1
519,071 - CCNA_00502 0.81 +1.1
519,093 + CCNA_00502 0.84 +0.6
519,101 - CCNA_00502 0.85 +1.1
519,116 + CCNA_00502 0.87 +0.5
519,119 - CCNA_00502 0.87 -3.0
519,124 - CCNA_00502 0.88 -0.3
519,124 - CCNA_00502 0.88 +0.7
519,206 + +1.1
519,206 + +0.4
519,206 + -0.1
519,206 + +0.1
519,206 + +0.9
519,206 + +2.1
519,206 + +0.1
519,206 + +0.5
519,214 - -0.7
519,214 - +0.2
519,214 - -0.3
519,217 + +0.7
519,230 + +0.1
519,238 - +0.2
519,259 + +0.4
519,259 + -0.1
519,259 + +1.3
519,259 + +0.8
519,259 + -0.4
519,259 + -0.6
519,266 - -1.1
519,267 - +0.5
519,267 - +1.0
519,267 - -0.2
519,365 + CCNA_00503 0.13 +0.2
519,365 + CCNA_00503 0.13 +0.0
519,373 - CCNA_00503 0.15 +0.7
519,373 - CCNA_00503 0.15 -0.3
519,383 - CCNA_00503 0.17 +2.1
519,411 + CCNA_00503 0.24 +0.5
519,431 - CCNA_00503 0.29 +0.4
519,479 - CCNA_00503 0.40 -0.0
519,480 + CCNA_00503 0.40 -0.2
519,483 + CCNA_00503 0.41 +1.9
519,488 - CCNA_00503 0.42 +1.0
519,584 + CCNA_00503 0.65 -3.1
519,592 - CCNA_00503 0.67 +0.1
519,618 - CCNA_00503 0.73 -0.3
519,640 - CCNA_00503 0.78 -0.6
519,641 + CCNA_00503 0.78 -0.1
519,647 + CCNA_00503 0.80 -0.5
519,689 + CCNA_00503 0.90 -0.4
519,774 - -0.8
519,784 - CCNA_00504 0.12 +0.3
519,815 + CCNA_00504 0.18 -0.5
519,823 - CCNA_00504 0.20 -0.1
519,823 - CCNA_00504 0.20 +0.4
519,836 + CCNA_00504 0.23 +0.0
519,902 + CCNA_00504 0.37 -0.4
519,910 - CCNA_00504 0.39 -0.2
519,947 + CCNA_00504 0.47 +0.2
519,960 + CCNA_00504 0.50 -0.6
519,967 + CCNA_00504 0.51 -1.4
520,020 - CCNA_00504 0.63 +0.2
520,041 + CCNA_00504 0.67 +0.5
520,047 + CCNA_00504 0.68 -0.1
520,047 + CCNA_00504 0.68 -1.3
520,050 - CCNA_00504 0.69 -0.2
520,055 - CCNA_00504 0.70 +0.4
520,055 - CCNA_00504 0.70 -1.0
520,055 - CCNA_00504 0.70 -1.6
520,070 - CCNA_00504 0.73 -0.3
520,106 + CCNA_00504 0.81 +0.1
520,106 + CCNA_00504 0.81 -0.0
520,106 + CCNA_00504 0.81 -2.2
520,106 + CCNA_00504 0.81 +0.1
520,106 + CCNA_00504 0.81 +0.4
520,106 + CCNA_00504 0.81 -0.4
520,107 + CCNA_00504 0.81 -1.0
520,114 - CCNA_00504 0.83 -1.0
520,114 - CCNA_00504 0.83 +0.2
520,114 - CCNA_00504 0.83 -0.4
520,114 - CCNA_00504 0.83 +0.6
520,115 - CCNA_00504 0.83 -0.6
520,115 - CCNA_00504 0.83 +2.0
520,115 - CCNA_00504 0.83 +0.2
520,115 - CCNA_00504 0.83 -0.0
520,115 - CCNA_00504 0.83 -0.1
520,115 - CCNA_00504 0.83 -0.5
520,115 - CCNA_00504 0.83 +0.2
520,115 - CCNA_00504 0.83 -0.5
520,126 - CCNA_00504 0.85 -0.1
520,136 + CCNA_00504 0.88 +0.4

Or see this region's nucleotide sequence