Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00425

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00424 and CCNA_00425 are separated by 72 nucleotidesCCNA_00425 and CCNA_00426 are separated by 450 nucleotidesCCNA_00426 and CCNA_00427 are separated by 68 nucleotides CCNA_00424: CCNA_00424 - aldehyde dehydrogenase, at 434,121 to 435,560 _00424 CCNA_00425: CCNA_00425 - hypothetical protein, at 435,633 to 436,094 _00425 CCNA_00426: CCNA_00426 - very-short-patch-repair endonuclease, at 436,545 to 436,889 _00426 CCNA_00427: CCNA_00427 - hypothetical protein, at 436,958 to 437,146 _00427 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1 2at 434.713 kb on - strand, within CCNA_00424at 434.713 kb on - strand, within CCNA_00424at 434.713 kb on - strand, within CCNA_00424at 434.714 kb on + strand, within CCNA_00424at 434.722 kb on - strand, within CCNA_00424at 434.811 kb on - strand, within CCNA_00424at 434.840 kb on - strand, within CCNA_00424at 434.856 kb on - strand, within CCNA_00424at 434.888 kb on - strand, within CCNA_00424at 434.932 kb on - strand, within CCNA_00424at 434.941 kb on + strand, within CCNA_00424at 434.954 kb on + strand, within CCNA_00424at 434.959 kb on - strand, within CCNA_00424at 434.959 kb on - strand, within CCNA_00424at 434.976 kb on + strand, within CCNA_00424at 435.014 kb on + strand, within CCNA_00424at 435.017 kb on - strand, within CCNA_00424at 435.032 kb on + strand, within CCNA_00424at 435.040 kb on - strand, within CCNA_00424at 435.069 kb on - strand, within CCNA_00424at 435.073 kb on + strand, within CCNA_00424at 435.081 kb on - strand, within CCNA_00424at 435.083 kb on + strand, within CCNA_00424at 435.087 kb on - strand, within CCNA_00424at 435.106 kb on - strand, within CCNA_00424at 435.133 kb on - strand, within CCNA_00424at 435.170 kb on + strand, within CCNA_00424at 435.177 kb on + strand, within CCNA_00424at 435.182 kb on + strand, within CCNA_00424at 435.185 kb on - strand, within CCNA_00424at 435.190 kb on - strand, within CCNA_00424at 435.196 kb on + strand, within CCNA_00424at 435.196 kb on + strand, within CCNA_00424at 435.196 kb on + strand, within CCNA_00424at 435.210 kb on + strand, within CCNA_00424at 435.276 kb on + strand, within CCNA_00424at 435.292 kb on + strand, within CCNA_00424at 435.296 kb on + strand, within CCNA_00424at 435.302 kb on + strand, within CCNA_00424at 435.320 kb on - strand, within CCNA_00424at 435.327 kb on + strand, within CCNA_00424at 435.327 kb on + strand, within CCNA_00424at 435.335 kb on - strand, within CCNA_00424at 435.368 kb on - strand, within CCNA_00424at 435.374 kb on + strand, within CCNA_00424at 435.381 kb on - strand, within CCNA_00424at 435.402 kb on + strand, within CCNA_00424at 435.427 kb on + strandat 435.427 kb on + strandat 435.440 kb on - strandat 435.515 kb on + strandat 435.525 kb on + strandat 435.546 kb on - strandat 435.574 kb on + strandat 435.584 kb on + strandat 435.584 kb on + strandat 435.584 kb on + strandat 435.592 kb on - strandat 435.592 kb on - strandat 435.592 kb on - strandat 435.592 kb on - strandat 435.592 kb on - strandat 435.594 kb on + strandat 435.594 kb on + strandat 435.602 kb on - strandat 435.663 kb on - strandat 435.884 kb on - strand, within CCNA_00425at 435.910 kb on + strand, within CCNA_00425at 435.912 kb on + strand, within CCNA_00425at 436.132 kb on - strandat 436.141 kb on + strandat 436.142 kb on - strandat 436.151 kb on + strandat 436.159 kb on - strandat 436.159 kb on - strandat 436.176 kb on + strandat 436.186 kb on + strandat 436.186 kb on + strandat 436.194 kb on - strandat 436.194 kb on - strandat 436.194 kb on - strandat 436.230 kb on + strandat 436.240 kb on + strandat 436.240 kb on + strandat 436.240 kb on + strandat 436.242 kb on + strandat 436.248 kb on - strandat 436.248 kb on - strandat 436.248 kb on - strandat 436.258 kb on - strandat 436.280 kb on + strandat 436.326 kb on + strandat 436.326 kb on + strandat 436.328 kb on + strandat 436.333 kb on + strandat 436.334 kb on - strandat 436.334 kb on - strandat 436.338 kb on + strandat 436.351 kb on + strandat 436.405 kb on - strandat 436.405 kb on - strandat 436.429 kb on + strandat 436.429 kb on + strandat 436.437 kb on - strandat 436.530 kb on - strandat 436.531 kb on - strandat 436.551 kb on - strandat 436.551 kb on - strandat 436.570 kb on + strandat 436.580 kb on + strand, within CCNA_00426at 436.582 kb on + strand, within CCNA_00426at 436.589 kb on - strand, within CCNA_00426at 436.589 kb on - strand, within CCNA_00426at 436.592 kb on + strand, within CCNA_00426at 436.593 kb on + strand, within CCNA_00426at 436.601 kb on - strand, within CCNA_00426at 436.604 kb on + strand, within CCNA_00426at 436.616 kb on + strand, within CCNA_00426at 436.619 kb on - strand, within CCNA_00426at 436.624 kb on - strand, within CCNA_00426at 436.624 kb on - strand, within CCNA_00426at 436.647 kb on - strand, within CCNA_00426at 436.685 kb on + strand, within CCNA_00426at 436.716 kb on + strand, within CCNA_00426at 436.719 kb on - strand, within CCNA_00426at 436.765 kb on + strand, within CCNA_00426at 436.797 kb on + strand, within CCNA_00426at 436.797 kb on + strand, within CCNA_00426at 436.797 kb on + strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.863 kb on + strandat 436.885 kb on + strandat 436.894 kb on - strandat 436.894 kb on - strandat 436.918 kb on + strandat 436.924 kb on + strandat 436.995 kb on - strand, within CCNA_00427at 437.006 kb on - strand, within CCNA_00427at 437.010 kb on + strand, within CCNA_00427at 437.018 kb on - strand, within CCNA_00427at 437.018 kb on - strand, within CCNA_00427at 437.018 kb on - strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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434,713 - CCNA_00424 0.41 +0.4
434,713 - CCNA_00424 0.41 -0.3
434,713 - CCNA_00424 0.41 -0.3
434,714 + CCNA_00424 0.41 -0.3
434,722 - CCNA_00424 0.42 -1.3
434,811 - CCNA_00424 0.48 -1.6
434,840 - CCNA_00424 0.50 +0.8
434,856 - CCNA_00424 0.51 -0.4
434,888 - CCNA_00424 0.53 +0.8
434,932 - CCNA_00424 0.56 -0.9
434,941 + CCNA_00424 0.57 +1.0
434,954 + CCNA_00424 0.58 +0.6
434,959 - CCNA_00424 0.58 +0.6
434,959 - CCNA_00424 0.58 -1.1
434,976 + CCNA_00424 0.59 +0.7
435,014 + CCNA_00424 0.62 +0.9
435,017 - CCNA_00424 0.62 -0.9
435,032 + CCNA_00424 0.63 +1.6
435,040 - CCNA_00424 0.64 -0.0
435,069 - CCNA_00424 0.66 -0.6
435,073 + CCNA_00424 0.66 -0.3
435,081 - CCNA_00424 0.67 -0.6
435,083 + CCNA_00424 0.67 -0.2
435,087 - CCNA_00424 0.67 -0.4
435,106 - CCNA_00424 0.68 -1.0
435,133 - CCNA_00424 0.70 -2.1
435,170 + CCNA_00424 0.73 +0.4
435,177 + CCNA_00424 0.73 +0.1
435,182 + CCNA_00424 0.74 -1.1
435,185 - CCNA_00424 0.74 +1.1
435,190 - CCNA_00424 0.74 +0.7
435,196 + CCNA_00424 0.75 -1.3
435,196 + CCNA_00424 0.75 +0.6
435,196 + CCNA_00424 0.75 +0.9
435,210 + CCNA_00424 0.76 -0.7
435,276 + CCNA_00424 0.80 +1.2
435,292 + CCNA_00424 0.81 -0.2
435,296 + CCNA_00424 0.82 -0.6
435,302 + CCNA_00424 0.82 -0.1
435,320 - CCNA_00424 0.83 +1.0
435,327 + CCNA_00424 0.84 -0.8
435,327 + CCNA_00424 0.84 +1.5
435,335 - CCNA_00424 0.84 -0.7
435,368 - CCNA_00424 0.87 -0.6
435,374 + CCNA_00424 0.87 +0.4
435,381 - CCNA_00424 0.88 -0.7
435,402 + CCNA_00424 0.89 -0.2
435,427 + +0.2
435,427 + +0.7
435,440 - -0.4
435,515 + +0.5
435,525 + -0.3
435,546 - -1.0
435,574 + +0.4
435,584 + -0.2
435,584 + +0.3
435,584 + +0.4
435,592 - -1.5
435,592 - -1.1
435,592 - +0.6
435,592 - -0.5
435,592 - -0.2
435,594 + -0.2
435,594 + +1.2
435,602 - -0.5
435,663 - -0.0
435,884 - CCNA_00425 0.54 +0.0
435,910 + CCNA_00425 0.60 -0.7
435,912 + CCNA_00425 0.60 -1.6
436,132 - -0.7
436,141 + -0.0
436,142 - +1.4
436,151 + -0.7
436,159 - -0.2
436,159 - +0.1
436,176 + -0.4
436,186 + -0.5
436,186 + -0.0
436,194 - -0.8
436,194 - -0.1
436,194 - +0.3
436,230 + -0.7
436,240 + +0.4
436,240 + +0.3
436,240 + +0.6
436,242 + +0.1
436,248 - +0.9
436,248 - +0.1
436,248 - -0.4
436,258 - -1.4
436,280 + -0.0
436,326 + +0.1
436,326 + +0.2
436,328 + +0.5
436,333 + +1.0
436,334 - -0.4
436,334 - -0.1
436,338 + +1.3
436,351 + +0.2
436,405 - +0.1
436,405 - -0.8
436,429 + -0.9
436,429 + +0.3
436,437 - -0.3
436,530 - +0.3
436,531 - -0.7
436,551 - -0.7
436,551 - -1.1
436,570 + -0.4
436,580 + CCNA_00426 0.10 -0.6
436,582 + CCNA_00426 0.11 -0.7
436,589 - CCNA_00426 0.13 -1.2
436,589 - CCNA_00426 0.13 -0.3
436,592 + CCNA_00426 0.14 -0.2
436,593 + CCNA_00426 0.14 +0.1
436,601 - CCNA_00426 0.16 -0.3
436,604 + CCNA_00426 0.17 -0.1
436,616 + CCNA_00426 0.21 -1.1
436,619 - CCNA_00426 0.21 -0.2
436,624 - CCNA_00426 0.23 +0.6
436,624 - CCNA_00426 0.23 +0.2
436,647 - CCNA_00426 0.30 -0.0
436,685 + CCNA_00426 0.41 -0.5
436,716 + CCNA_00426 0.50 -0.1
436,719 - CCNA_00426 0.50 +0.8
436,765 + CCNA_00426 0.64 -0.3
436,797 + CCNA_00426 0.73 +1.9
436,797 + CCNA_00426 0.73 -0.4
436,797 + CCNA_00426 0.73 +0.5
436,805 - CCNA_00426 0.75 +0.2
436,805 - CCNA_00426 0.75 +0.4
436,805 - CCNA_00426 0.75 +0.3
436,863 + -0.2
436,885 + +0.3
436,894 - -1.2
436,894 - -0.2
436,918 + +0.6
436,924 + -0.0
436,995 - CCNA_00427 0.20 +0.1
437,006 - CCNA_00427 0.25 -0.5
437,010 + CCNA_00427 0.28 +0.3
437,018 - CCNA_00427 0.32 -0.2
437,018 - CCNA_00427 0.32 +0.0
437,018 - CCNA_00427 0.32 +0.1
437,059 + CCNA_00427 0.53 -0.2
437,059 + CCNA_00427 0.53 +0.8
437,059 + CCNA_00427 0.53 -0.3
437,059 + CCNA_00427 0.53 +0.1
437,067 - CCNA_00427 0.58 +1.0
437,067 - CCNA_00427 0.58 -1.3
437,067 - CCNA_00427 0.58 +0.2

Or see this region's nucleotide sequence