Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00384 and CCNA_00385 are separated by 47 nucleotides CCNA_00385 and CCNA_00386 overlap by 4 nucleotides CCNA_00386 and CCNA_00387 are separated by 129 nucleotides
CCNA_00384: CCNA_00384 - glucan endo-1,3-beta-glucosidase, at 400,574 to 401,479
_00384
CCNA_00385: CCNA_00385 - multidrug resistance protein, at 401,527 to 402,861
_00385
CCNA_00386: CCNA_00386 - DNA-3-methyladenine glycosylase, at 402,858 to 403,445
_00386
CCNA_00387: CCNA_00387 - hypothetical protein, at 403,575 to 403,997
_00387
Position (kb) 401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.558 kb on + strand at 400.577 kb on - strand at 400.580 kb on - strand at 400.593 kb on + strand at 400.610 kb on + strand at 400.647 kb on + strand at 400.672 kb on + strand, within CCNA_00384 at 400.683 kb on - strand, within CCNA_00384 at 400.694 kb on - strand, within CCNA_00384 at 400.774 kb on - strand, within CCNA_00384 at 400.781 kb on + strand, within CCNA_00384 at 400.781 kb on + strand, within CCNA_00384 at 400.781 kb on + strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.832 kb on - strand, within CCNA_00384 at 400.835 kb on + strand, within CCNA_00384 at 400.877 kb on + strand, within CCNA_00384 at 400.896 kb on - strand, within CCNA_00384 at 400.896 kb on - strand, within CCNA_00384 at 400.897 kb on - strand, within CCNA_00384 at 400.911 kb on + strand, within CCNA_00384 at 400.942 kb on - strand, within CCNA_00384 at 400.989 kb on - strand, within CCNA_00384 at 400.992 kb on + strand, within CCNA_00384 at 401.033 kb on - strand, within CCNA_00384 at 401.052 kb on - strand, within CCNA_00384 at 401.113 kb on - strand, within CCNA_00384 at 401.113 kb on - strand, within CCNA_00384 at 401.204 kb on - strand, within CCNA_00384 at 401.204 kb on - strand, within CCNA_00384 at 401.205 kb on + strand, within CCNA_00384 at 401.222 kb on + strand, within CCNA_00384 at 401.275 kb on - strand, within CCNA_00384 at 401.285 kb on + strand, within CCNA_00384 at 401.319 kb on + strand, within CCNA_00384 at 401.322 kb on - strand, within CCNA_00384 at 401.389 kb on + strand at 401.422 kb on + strand at 401.435 kb on + strand at 401.435 kb on + strand at 401.435 kb on + strand at 401.439 kb on - strand at 401.445 kb on + strand at 401.447 kb on + strand at 401.512 kb on + strand at 401.512 kb on + strand at 401.513 kb on + strand at 401.521 kb on - strand at 401.521 kb on - strand at 401.525 kb on + strand at 401.546 kb on - strand at 401.548 kb on - strand at 401.606 kb on + strand at 401.619 kb on - strand at 401.641 kb on + strand at 401.645 kb on - strand at 401.694 kb on + strand, within CCNA_00385 at 401.720 kb on + strand, within CCNA_00385 at 401.722 kb on + strand, within CCNA_00385 at 401.753 kb on - strand, within CCNA_00385 at 401.755 kb on + strand, within CCNA_00385 at 401.765 kb on - strand, within CCNA_00385 at 401.778 kb on + strand, within CCNA_00385 at 401.778 kb on + strand, within CCNA_00385 at 401.778 kb on + strand, within CCNA_00385 at 401.778 kb on + strand, within CCNA_00385 at 401.778 kb on + strand, within CCNA_00385 at 401.785 kb on + strand, within CCNA_00385 at 401.786 kb on + strand, within CCNA_00385 at 401.786 kb on + strand, within CCNA_00385 at 401.790 kb on + strand, within CCNA_00385 at 401.790 kb on + strand, within CCNA_00385 at 401.798 kb on - strand, within CCNA_00385 at 401.800 kb on + strand, within CCNA_00385 at 401.812 kb on + strand, within CCNA_00385 at 401.843 kb on - strand, within CCNA_00385 at 401.857 kb on + strand, within CCNA_00385 at 401.857 kb on - strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.914 kb on - strand, within CCNA_00385 at 401.914 kb on - strand, within CCNA_00385 at 401.914 kb on - strand, within CCNA_00385 at 401.916 kb on + strand, within CCNA_00385 at 401.924 kb on - strand, within CCNA_00385 at 401.924 kb on - strand, within CCNA_00385 at 401.934 kb on + strand, within CCNA_00385 at 401.942 kb on - strand, within CCNA_00385 at 401.961 kb on + strand, within CCNA_00385 at 401.963 kb on + strand, within CCNA_00385 at 401.968 kb on + strand, within CCNA_00385 at 401.973 kb on + strand, within CCNA_00385 at 401.990 kb on - strand, within CCNA_00385 at 402.008 kb on + strand, within CCNA_00385 at 402.008 kb on + strand, within CCNA_00385 at 402.016 kb on - strand, within CCNA_00385 at 402.042 kb on - strand, within CCNA_00385 at 402.051 kb on - strand, within CCNA_00385 at 402.075 kb on - strand, within CCNA_00385 at 402.075 kb on - strand, within CCNA_00385 at 402.093 kb on + strand, within CCNA_00385 at 402.101 kb on - strand, within CCNA_00385 at 402.101 kb on - strand, within CCNA_00385 at 402.123 kb on + strand, within CCNA_00385 at 402.134 kb on + strand, within CCNA_00385 at 402.172 kb on + strand, within CCNA_00385 at 402.180 kb on - strand, within CCNA_00385 at 402.221 kb on + strand, within CCNA_00385 at 402.231 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.307 kb on + strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.327 kb on - strand, within CCNA_00385 at 402.327 kb on - strand, within CCNA_00385 at 402.390 kb on - strand, within CCNA_00385 at 402.397 kb on + strand, within CCNA_00385 at 402.398 kb on - strand, within CCNA_00385 at 402.429 kb on + strand, within CCNA_00385 at 402.513 kb on + strand, within CCNA_00385 at 402.521 kb on - strand, within CCNA_00385 at 402.521 kb on - strand, within CCNA_00385 at 402.540 kb on - strand, within CCNA_00385 at 402.546 kb on + strand, within CCNA_00385 at 402.546 kb on + strand, within CCNA_00385 at 402.561 kb on - strand, within CCNA_00385 at 402.580 kb on + strand, within CCNA_00385 at 402.587 kb on - strand, within CCNA_00385 at 402.588 kb on - strand, within CCNA_00385 at 402.599 kb on + strand, within CCNA_00385 at 402.607 kb on - strand, within CCNA_00385 at 402.634 kb on - strand, within CCNA_00385 at 402.678 kb on + strand, within CCNA_00385 at 402.721 kb on + strand, within CCNA_00385 at 402.739 kb on + strand at 402.745 kb on + strand at 402.752 kb on - strand at 402.754 kb on - strand at 402.756 kb on + strand at 402.756 kb on + strand at 402.797 kb on + strand at 402.812 kb on - strand at 402.827 kb on + strand at 402.867 kb on + strand at 402.867 kb on + strand at 402.875 kb on - strand at 402.875 kb on - strand at 402.921 kb on - strand, within CCNA_00386 at 402.923 kb on + strand, within CCNA_00386 at 402.923 kb on + strand, within CCNA_00386 at 402.931 kb on - strand, within CCNA_00386 at 402.931 kb on - strand, within CCNA_00386 at 402.935 kb on + strand, within CCNA_00386 at 402.943 kb on + strand, within CCNA_00386 at 402.969 kb on + strand, within CCNA_00386 at 402.984 kb on - strand, within CCNA_00386 at 402.991 kb on + strand, within CCNA_00386 at 402.991 kb on + strand, within CCNA_00386 at 402.999 kb on - strand, within CCNA_00386 at 403.018 kb on + strand, within CCNA_00386 at 403.032 kb on - strand, within CCNA_00386 at 403.032 kb on - strand, within CCNA_00386 at 403.066 kb on + strand, within CCNA_00386 at 403.089 kb on - strand, within CCNA_00386 at 403.106 kb on - strand, within CCNA_00386 at 403.117 kb on - strand, within CCNA_00386 at 403.118 kb on + strand, within CCNA_00386 at 403.118 kb on + strand, within CCNA_00386 at 403.118 kb on + strand, within CCNA_00386 at 403.126 kb on - strand, within CCNA_00386 at 403.126 kb on - strand, within CCNA_00386 at 403.185 kb on - strand, within CCNA_00386 at 403.258 kb on + strand, within CCNA_00386 at 403.266 kb on + strand, within CCNA_00386 at 403.266 kb on - strand, within CCNA_00386 at 403.281 kb on - strand, within CCNA_00386 at 403.291 kb on - strand, within CCNA_00386 at 403.296 kb on + strand, within CCNA_00386 at 403.299 kb on - strand, within CCNA_00386 at 403.304 kb on - strand, within CCNA_00386 at 403.315 kb on - strand, within CCNA_00386 at 403.328 kb on + strand, within CCNA_00386 at 403.340 kb on + strand, within CCNA_00386 at 403.348 kb on - strand, within CCNA_00386 at 403.358 kb on - strand, within CCNA_00386 at 403.381 kb on + strand, within CCNA_00386 at 403.387 kb on + strand at 403.390 kb on - strand at 403.408 kb on - strand at 403.443 kb on - strand at 403.550 kb on + strand at 403.591 kb on - strand at 403.625 kb on + strand, within CCNA_00387 at 403.644 kb on + strand, within CCNA_00387 at 403.645 kb on - strand, within CCNA_00387 at 403.646 kb on - strand, within CCNA_00387 at 403.649 kb on + strand, within CCNA_00387 at 403.652 kb on - strand, within CCNA_00387 at 403.652 kb on - strand, within CCNA_00387 at 403.652 kb on - strand, within CCNA_00387 at 403.657 kb on - strand, within CCNA_00387 at 403.663 kb on + strand, within CCNA_00387 at 403.744 kb on + strand, within CCNA_00387 at 403.780 kb on - strand, within CCNA_00387 at 403.818 kb on - strand, within CCNA_00387 at 403.820 kb on + strand, within CCNA_00387 at 403.823 kb on - strand, within CCNA_00387 at 403.839 kb on - strand, within CCNA_00387 at 403.842 kb on + strand, within CCNA_00387 at 403.842 kb on + strand, within CCNA_00387 at 403.850 kb on - strand, within CCNA_00387
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 400,558 + -0.5 400,577 - -1.1 400,580 - +0.5 400,593 + -0.8 400,610 + +0.4 400,647 + -0.1 400,672 + CCNA_00384 0.11 -0.1 400,683 - CCNA_00384 0.12 +1.0 400,694 - CCNA_00384 0.13 -0.0 400,774 - CCNA_00384 0.22 +0.8 400,781 + CCNA_00384 0.23 -0.5 400,781 + CCNA_00384 0.23 -0.1 400,781 + CCNA_00384 0.23 -0.4 400,789 - CCNA_00384 0.24 +0.4 400,789 - CCNA_00384 0.24 +0.7 400,832 - CCNA_00384 0.28 +0.2 400,835 + CCNA_00384 0.29 -0.8 400,877 + CCNA_00384 0.33 -0.5 400,896 - CCNA_00384 0.36 +0.3 400,896 - CCNA_00384 0.36 -0.5 400,897 - CCNA_00384 0.36 -0.6 400,911 + CCNA_00384 0.37 -0.4 400,942 - CCNA_00384 0.41 -0.7 400,989 - CCNA_00384 0.46 -2.6 400,992 + CCNA_00384 0.46 -0.3 401,033 - CCNA_00384 0.51 -1.3 401,052 - CCNA_00384 0.53 -0.0 401,113 - CCNA_00384 0.59 +0.5 401,113 - CCNA_00384 0.59 +0.8 401,204 - CCNA_00384 0.70 +0.8 401,204 - CCNA_00384 0.70 +0.0 401,205 + CCNA_00384 0.70 +0.0 401,222 + CCNA_00384 0.72 -0.5 401,275 - CCNA_00384 0.77 -0.4 401,285 + CCNA_00384 0.78 -0.4 401,319 + CCNA_00384 0.82 +1.8 401,322 - CCNA_00384 0.83 -0.2 401,389 + +0.3 401,422 + -0.3 401,435 + -1.1 401,435 + +0.6 401,435 + -0.2 401,439 - -0.7 401,445 + +1.3 401,447 + -0.5 401,512 + -0.6 401,512 + +0.2 401,513 + -0.8 401,521 - +0.5 401,521 - -1.3 401,525 + -0.8 401,546 - -0.4 401,548 - +0.9 401,606 + +0.3 401,619 - -0.3 401,641 + +0.1 401,645 - -0.4 401,694 + CCNA_00385 0.13 -0.3 401,720 + CCNA_00385 0.14 -0.3 401,722 + CCNA_00385 0.15 +0.4 401,753 - CCNA_00385 0.17 -1.5 401,755 + CCNA_00385 0.17 -1.7 401,765 - CCNA_00385 0.18 -0.1 401,778 + CCNA_00385 0.19 -0.4 401,778 + CCNA_00385 0.19 +0.0 401,778 + CCNA_00385 0.19 +0.5 401,778 + CCNA_00385 0.19 +0.4 401,778 + CCNA_00385 0.19 -0.4 401,785 + CCNA_00385 0.19 +0.8 401,786 + CCNA_00385 0.19 +0.9 401,786 + CCNA_00385 0.19 -0.8 401,790 + CCNA_00385 0.20 -0.7 401,790 + CCNA_00385 0.20 -0.4 401,798 - CCNA_00385 0.20 -0.7 401,800 + CCNA_00385 0.20 -0.3 401,812 + CCNA_00385 0.21 -1.1 401,843 - CCNA_00385 0.24 -0.3 401,857 + CCNA_00385 0.25 -0.0 401,857 - CCNA_00385 0.25 -0.5 401,906 + CCNA_00385 0.28 -0.1 401,906 + CCNA_00385 0.28 +0.2 401,906 + CCNA_00385 0.28 +1.1 401,906 + CCNA_00385 0.28 +0.5 401,914 - CCNA_00385 0.29 +1.9 401,914 - CCNA_00385 0.29 -1.4 401,914 - CCNA_00385 0.29 +0.4 401,916 + CCNA_00385 0.29 -0.6 401,924 - CCNA_00385 0.30 +0.4 401,924 - CCNA_00385 0.30 -0.8 401,934 + CCNA_00385 0.30 +0.5 401,942 - CCNA_00385 0.31 -2.1 401,961 + CCNA_00385 0.33 +0.0 401,963 + CCNA_00385 0.33 +0.2 401,968 + CCNA_00385 0.33 +0.3 401,973 + CCNA_00385 0.33 +0.1 401,990 - CCNA_00385 0.35 +1.0 402,008 + CCNA_00385 0.36 +2.6 402,008 + CCNA_00385 0.36 +0.1 402,016 - CCNA_00385 0.37 -0.2 402,042 - CCNA_00385 0.39 -0.3 402,051 - CCNA_00385 0.39 -0.5 402,075 - CCNA_00385 0.41 +0.4 402,075 - CCNA_00385 0.41 -0.5 402,093 + CCNA_00385 0.42 -1.1 402,101 - CCNA_00385 0.43 -0.7 402,101 - CCNA_00385 0.43 -0.1 402,123 + CCNA_00385 0.45 -0.7 402,134 + CCNA_00385 0.45 -0.9 402,172 + CCNA_00385 0.48 -0.0 402,180 - CCNA_00385 0.49 -0.9 402,221 + CCNA_00385 0.52 -0.5 402,231 + CCNA_00385 0.53 +1.5 402,284 + CCNA_00385 0.57 +0.3 402,284 + CCNA_00385 0.57 +0.3 402,284 + CCNA_00385 0.57 -0.0 402,284 + CCNA_00385 0.57 +0.2 402,284 + CCNA_00385 0.57 -0.6 402,284 + CCNA_00385 0.57 -0.1 402,284 + CCNA_00385 0.57 -0.3 402,284 + CCNA_00385 0.57 -0.3 402,284 + CCNA_00385 0.57 +0.7 402,284 + CCNA_00385 0.57 -0.1 402,292 - CCNA_00385 0.57 +0.4 402,292 - CCNA_00385 0.57 -0.3 402,292 - CCNA_00385 0.57 -0.7 402,292 - CCNA_00385 0.57 -1.1 402,292 - CCNA_00385 0.57 -1.2 402,292 - CCNA_00385 0.57 -0.1 402,292 - CCNA_00385 0.57 +0.3 402,292 - CCNA_00385 0.57 +0.3 402,292 - CCNA_00385 0.57 -0.1 402,292 - CCNA_00385 0.57 +1.1 402,292 - CCNA_00385 0.57 +0.7 402,292 - CCNA_00385 0.57 -0.7 402,292 - CCNA_00385 0.57 -0.9 402,307 + CCNA_00385 0.58 -0.3 402,312 + CCNA_00385 0.59 -0.1 402,312 + CCNA_00385 0.59 +0.3 402,312 + CCNA_00385 0.59 +0.1 402,312 + CCNA_00385 0.59 -0.2 402,320 - CCNA_00385 0.59 -0.2 402,320 - CCNA_00385 0.59 -1.9 402,320 - CCNA_00385 0.59 +1.2 402,320 - CCNA_00385 0.59 -1.2 402,320 - CCNA_00385 0.59 -1.0 402,327 - CCNA_00385 0.60 -1.1 402,327 - CCNA_00385 0.60 +0.2 402,390 - CCNA_00385 0.65 -0.1 402,397 + CCNA_00385 0.65 -0.4 402,398 - CCNA_00385 0.65 -0.2 402,429 + CCNA_00385 0.68 -0.8 402,513 + CCNA_00385 0.74 +0.0 402,521 - CCNA_00385 0.74 +0.7 402,521 - CCNA_00385 0.74 -0.6 402,540 - CCNA_00385 0.76 -1.6 402,546 + CCNA_00385 0.76 +1.8 402,546 + CCNA_00385 0.76 +0.2 402,561 - CCNA_00385 0.77 -0.2 402,580 + CCNA_00385 0.79 +0.2 402,587 - CCNA_00385 0.79 -0.2 402,588 - CCNA_00385 0.79 +0.2 402,599 + CCNA_00385 0.80 -0.1 402,607 - CCNA_00385 0.81 -0.8 402,634 - CCNA_00385 0.83 +0.3 402,678 + CCNA_00385 0.86 -0.3 402,721 + CCNA_00385 0.89 +0.2 402,739 + +0.3 402,745 + -0.4 402,752 - -0.7 402,754 - -1.1 402,756 + -0.1 402,756 + +0.2 402,797 + +0.7 402,812 - -0.3 402,827 + +0.5 402,867 + -0.7 402,867 + -0.6 402,875 - +0.7 402,875 - +2.4 402,921 - CCNA_00386 0.11 -0.3 402,923 + CCNA_00386 0.11 +1.0 402,923 + CCNA_00386 0.11 +0.7 402,931 - CCNA_00386 0.12 -0.3 402,931 - CCNA_00386 0.12 +0.1 402,935 + CCNA_00386 0.13 -0.3 402,943 + CCNA_00386 0.14 -0.9 402,969 + CCNA_00386 0.19 +0.7 402,984 - CCNA_00386 0.21 +0.6 402,991 + CCNA_00386 0.23 -0.5 402,991 + CCNA_00386 0.23 -0.0 402,999 - CCNA_00386 0.24 -0.9 403,018 + CCNA_00386 0.27 +0.3 403,032 - CCNA_00386 0.30 +0.1 403,032 - CCNA_00386 0.30 -1.3 403,066 + CCNA_00386 0.35 +0.2 403,089 - CCNA_00386 0.39 -0.9 403,106 - CCNA_00386 0.42 +1.6 403,117 - CCNA_00386 0.44 -0.4 403,118 + CCNA_00386 0.44 -0.3 403,118 + CCNA_00386 0.44 -0.6 403,118 + CCNA_00386 0.44 -0.9 403,126 - CCNA_00386 0.46 -0.2 403,126 - CCNA_00386 0.46 +0.0 403,185 - CCNA_00386 0.56 -0.7 403,258 + CCNA_00386 0.68 -0.2 403,266 + CCNA_00386 0.69 +0.6 403,266 - CCNA_00386 0.69 -0.7 403,281 - CCNA_00386 0.72 -1.4 403,291 - CCNA_00386 0.74 +0.0 403,296 + CCNA_00386 0.74 -0.9 403,299 - CCNA_00386 0.75 +1.2 403,304 - CCNA_00386 0.76 +1.5 403,315 - CCNA_00386 0.78 -1.6 403,328 + CCNA_00386 0.80 +0.1 403,340 + CCNA_00386 0.82 -0.5 403,348 - CCNA_00386 0.83 +0.2 403,358 - CCNA_00386 0.85 -0.2 403,381 + CCNA_00386 0.89 -0.3 403,387 + -0.9 403,390 - +1.6 403,408 - -0.2 403,443 - -0.1 403,550 + -0.4 403,591 - -1.1 403,625 + CCNA_00387 0.12 -0.5 403,644 + CCNA_00387 0.16 +0.5 403,645 - CCNA_00387 0.17 -1.3 403,646 - CCNA_00387 0.17 -0.2 403,649 + CCNA_00387 0.17 +0.7 403,652 - CCNA_00387 0.18 -0.6 403,652 - CCNA_00387 0.18 -0.6 403,652 - CCNA_00387 0.18 -0.9 403,657 - CCNA_00387 0.19 -0.0 403,663 + CCNA_00387 0.21 +0.8 403,744 + CCNA_00387 0.40 +0.1 403,780 - CCNA_00387 0.48 -2.3 403,818 - CCNA_00387 0.57 -0.3 403,820 + CCNA_00387 0.58 +0.1 403,823 - CCNA_00387 0.59 -0.4 403,839 - CCNA_00387 0.62 +0.3 403,842 + CCNA_00387 0.63 +0.0 403,842 + CCNA_00387 0.63 -0.5 403,850 - CCNA_00387 0.65 -0.8
Or see this region's nucleotide sequence