Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00379

Experiment: PYE no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00377 and CCNA_00378 are separated by 21 nucleotidesCCNA_00378 and CCNA_00379 overlap by 1 nucleotidesCCNA_00379 and CCNA_00380 are separated by 238 nucleotidesCCNA_00380 and CCNA_00381 are separated by 47 nucleotides CCNA_00377: CCNA_00377 - chromosome partition protein Smc, at 391,953 to 395,396 _00377 CCNA_00378: CCNA_00378 - thiol:disulfide interchange protein dsbA, at 395,418 to 396,026 _00378 CCNA_00379: CCNA_00379 - thiol:disulfide interchange protein dsbA, at 396,026 to 396,640 _00379 CCNA_00380: CCNA_00380 - conserved hypothetical cytosolic protein, at 396,879 to 397,418 _00380 CCNA_00381: CCNA_00381 - A/G-specific adenine DNA glycosylase, at 397,466 to 398,515 _00381 Position (kb) 396 397Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 395.083 kb on - strandat 395.107 kb on + strandat 395.107 kb on + strandat 395.107 kb on + strandat 395.115 kb on - strandat 395.115 kb on - strandat 395.161 kb on - strandat 395.177 kb on - strandat 395.226 kb on + strandat 395.255 kb on + strandat 395.260 kb on - strandat 395.262 kb on + strandat 395.262 kb on + strandat 395.262 kb on + strandat 395.262 kb on + strandat 395.262 kb on + strandat 395.321 kb on + strandat 395.321 kb on + strandat 395.321 kb on + strandat 395.324 kb on - strandat 395.329 kb on - strandat 395.329 kb on - strandat 395.332 kb on + strandat 395.340 kb on - strandat 395.340 kb on - strandat 395.340 kb on - strandat 395.393 kb on + strandat 395.393 kb on + strandat 395.393 kb on + strandat 395.396 kb on - strandat 395.401 kb on - strandat 395.401 kb on - strandat 395.401 kb on - strandat 395.416 kb on + strandat 395.423 kb on - strandat 395.433 kb on - strandat 395.451 kb on - strandat 395.472 kb on + strandat 395.481 kb on - strand, within CCNA_00378at 395.483 kb on - strand, within CCNA_00378at 395.483 kb on - strand, within CCNA_00378at 395.483 kb on - strand, within CCNA_00378at 395.485 kb on - strand, within CCNA_00378at 395.512 kb on + strand, within CCNA_00378at 395.520 kb on - strand, within CCNA_00378at 395.525 kb on - strand, within CCNA_00378at 395.570 kb on + strand, within CCNA_00378at 395.575 kb on + strand, within CCNA_00378at 395.588 kb on - strand, within CCNA_00378at 395.588 kb on - strand, within CCNA_00378at 395.598 kb on - strand, within CCNA_00378at 395.602 kb on + strand, within CCNA_00378at 395.602 kb on + strand, within CCNA_00378at 395.603 kb on - strand, within CCNA_00378at 395.614 kb on + strand, within CCNA_00378at 395.622 kb on - strand, within CCNA_00378at 395.641 kb on - strand, within CCNA_00378at 395.786 kb on + strand, within CCNA_00378at 395.796 kb on - strand, within CCNA_00378at 395.837 kb on + strand, within CCNA_00378at 395.845 kb on - strand, within CCNA_00378at 395.880 kb on + strand, within CCNA_00378at 395.888 kb on - strand, within CCNA_00378at 395.921 kb on + strand, within CCNA_00378at 395.921 kb on + strand, within CCNA_00378at 395.924 kb on - strand, within CCNA_00378at 395.929 kb on - strand, within CCNA_00378at 396.022 kb on - strandat 396.155 kb on - strand, within CCNA_00379at 396.155 kb on - strand, within CCNA_00379at 396.747 kb on + strandat 396.747 kb on - strandat 396.755 kb on - strandat 396.757 kb on - strandat 396.789 kb on + strandat 396.796 kb on + strandat 396.820 kb on + strandat 396.828 kb on - strandat 396.843 kb on + strandat 396.846 kb on - strandat 396.846 kb on - strandat 396.851 kb on - strandat 396.864 kb on + strandat 396.877 kb on + strandat 396.877 kb on + strandat 396.885 kb on - strandat 396.899 kb on - strandat 397.466 kb on + strandat 397.482 kb on - strandat 397.488 kb on + strandat 397.515 kb on - strandat 397.529 kb on - strandat 397.560 kb on + strandat 397.603 kb on + strand, within CCNA_00381at 397.605 kb on - strand, within CCNA_00381at 397.610 kb on + strand, within CCNA_00381

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
remove
395,083 - +0.5
395,107 + -0.4
395,107 + -0.1
395,107 + -2.4
395,115 - +1.0
395,115 - +0.6
395,161 - +2.1
395,177 - -2.0
395,226 + -0.2
395,255 + -0.3
395,260 - +0.3
395,262 + -1.1
395,262 + -1.1
395,262 + +0.0
395,262 + -0.8
395,262 + -1.1
395,321 + +0.2
395,321 + -0.9
395,321 + -1.8
395,324 - +0.8
395,329 - +0.0
395,329 - +0.3
395,332 + -1.2
395,340 - +0.3
395,340 - -0.2
395,340 - +0.7
395,393 + -1.0
395,393 + -0.3
395,393 + -0.2
395,396 - +0.5
395,401 - -1.1
395,401 - -0.4
395,401 - +0.0
395,416 + +1.1
395,423 - +0.1
395,433 - +0.5
395,451 - +0.5
395,472 + -0.9
395,481 - CCNA_00378 0.10 -0.1
395,483 - CCNA_00378 0.11 +0.0
395,483 - CCNA_00378 0.11 -0.0
395,483 - CCNA_00378 0.11 +0.1
395,485 - CCNA_00378 0.11 -0.7
395,512 + CCNA_00378 0.15 -0.0
395,520 - CCNA_00378 0.17 -0.1
395,525 - CCNA_00378 0.18 -1.3
395,570 + CCNA_00378 0.25 -2.3
395,575 + CCNA_00378 0.26 +0.3
395,588 - CCNA_00378 0.28 +0.5
395,588 - CCNA_00378 0.28 +1.4
395,598 - CCNA_00378 0.30 +0.4
395,602 + CCNA_00378 0.30 -0.1
395,602 + CCNA_00378 0.30 +0.0
395,603 - CCNA_00378 0.30 +0.3
395,614 + CCNA_00378 0.32 -0.7
395,622 - CCNA_00378 0.33 +0.6
395,641 - CCNA_00378 0.37 -0.5
395,786 + CCNA_00378 0.60 -0.4
395,796 - CCNA_00378 0.62 -0.9
395,837 + CCNA_00378 0.69 +0.9
395,845 - CCNA_00378 0.70 +1.1
395,880 + CCNA_00378 0.76 -3.0
395,888 - CCNA_00378 0.77 -0.7
395,921 + CCNA_00378 0.83 -0.9
395,921 + CCNA_00378 0.83 +0.0
395,924 - CCNA_00378 0.83 +1.6
395,929 - CCNA_00378 0.84 -0.1
396,022 - +0.5
396,155 - CCNA_00379 0.21 +0.2
396,155 - CCNA_00379 0.21 +0.1
396,747 + -0.2
396,747 - -0.3
396,755 - +0.1
396,757 - +0.1
396,789 + -2.1
396,796 + -1.0
396,820 + +0.0
396,828 - +0.5
396,843 + +0.4
396,846 - +0.9
396,846 - +0.2
396,851 - -0.0
396,864 + +0.5
396,877 + +0.4
396,877 + +0.3
396,885 - -0.2
396,899 - +0.0
397,466 + -0.3
397,482 - -1.7
397,488 + -1.0
397,515 - -1.8
397,529 - -1.4
397,560 + +0.1
397,603 + CCNA_00381 0.13 -0.1
397,605 - CCNA_00381 0.13 +0.0
397,610 + CCNA_00381 0.14 -0.8

Or see this region's nucleotide sequence