Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00364

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00362 and CCNA_00363 are separated by 36 nucleotidesCCNA_00363 and CCNA_00364 are separated by 78 nucleotidesCCNA_00364 and CCNA_00365 are separated by 122 nucleotides CCNA_00362: CCNA_00362 - zinc uptake regulation protein, at 378,802 to 379,287 _00362 CCNA_00363: CCNA_00363 - PAP2 bacterial acid phosphatase, at 379,324 to 380,100 _00363 CCNA_00364: CCNA_00364 - deoxyhypusine synthase, at 380,179 to 381,273 _00364 CCNA_00365: CCNA_00365 - ornithine decarboxylase, at 381,396 to 382,655 _00365 Position (kb) 380 381 382Strain fitness (log2 ratio) -2 -1 0 1at 379.255 kb on - strandat 379.285 kb on - strandat 379.296 kb on - strandat 379.296 kb on - strandat 379.330 kb on - strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.366 kb on - strandat 379.366 kb on - strandat 379.409 kb on + strand, within CCNA_00363at 379.436 kb on + strand, within CCNA_00363at 379.473 kb on + strand, within CCNA_00363at 379.489 kb on - strand, within CCNA_00363at 379.513 kb on + strand, within CCNA_00363at 379.513 kb on + strand, within CCNA_00363at 379.514 kb on - strand, within CCNA_00363at 379.531 kb on - strand, within CCNA_00363at 379.531 kb on - strand, within CCNA_00363at 379.544 kb on + strand, within CCNA_00363at 379.544 kb on + strand, within CCNA_00363at 379.549 kb on + strand, within CCNA_00363at 379.552 kb on - strand, within CCNA_00363at 379.561 kb on + strand, within CCNA_00363at 379.569 kb on - strand, within CCNA_00363at 379.569 kb on - strand, within CCNA_00363at 379.602 kb on + strand, within CCNA_00363at 379.616 kb on + strand, within CCNA_00363at 379.621 kb on + strand, within CCNA_00363at 379.647 kb on + strand, within CCNA_00363at 379.659 kb on + strand, within CCNA_00363at 379.664 kb on + strand, within CCNA_00363at 379.782 kb on + strand, within CCNA_00363at 379.790 kb on - strand, within CCNA_00363at 379.837 kb on + strand, within CCNA_00363at 379.854 kb on - strand, within CCNA_00363at 379.854 kb on - strand, within CCNA_00363at 379.886 kb on + strand, within CCNA_00363at 379.906 kb on - strand, within CCNA_00363at 379.950 kb on + strand, within CCNA_00363at 379.958 kb on - strand, within CCNA_00363at 380.003 kb on + strand, within CCNA_00363at 380.043 kb on + strandat 380.043 kb on + strandat 380.043 kb on + strandat 381.249 kb on - strandat 381.303 kb on - strandat 381.348 kb on - strandat 381.389 kb on + strandat 381.389 kb on + strandat 381.435 kb on - strandat 381.459 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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379,255 - +0.2
379,285 - +0.3
379,296 - -0.6
379,296 - +0.0
379,330 - -0.1
379,342 - -0.1
379,342 - -0.2
379,342 - -0.4
379,342 - +0.5
379,342 - +0.2
379,342 - -1.8
379,366 - +1.1
379,366 - +0.4
379,409 + CCNA_00363 0.11 -0.2
379,436 + CCNA_00363 0.14 +0.3
379,473 + CCNA_00363 0.19 -0.2
379,489 - CCNA_00363 0.21 +0.3
379,513 + CCNA_00363 0.24 +0.2
379,513 + CCNA_00363 0.24 -0.1
379,514 - CCNA_00363 0.24 +1.2
379,531 - CCNA_00363 0.27 +0.6
379,531 - CCNA_00363 0.27 +0.3
379,544 + CCNA_00363 0.28 -0.4
379,544 + CCNA_00363 0.28 +0.3
379,549 + CCNA_00363 0.29 -0.5
379,552 - CCNA_00363 0.29 +0.2
379,561 + CCNA_00363 0.31 -0.7
379,569 - CCNA_00363 0.32 +0.2
379,569 - CCNA_00363 0.32 +0.1
379,602 + CCNA_00363 0.36 -0.2
379,616 + CCNA_00363 0.38 -2.1
379,621 + CCNA_00363 0.38 -0.2
379,647 + CCNA_00363 0.42 +0.0
379,659 + CCNA_00363 0.43 -0.8
379,664 + CCNA_00363 0.44 +0.4
379,782 + CCNA_00363 0.59 -0.7
379,790 - CCNA_00363 0.60 +0.6
379,837 + CCNA_00363 0.66 +1.1
379,854 - CCNA_00363 0.68 +1.0
379,854 - CCNA_00363 0.68 +1.2
379,886 + CCNA_00363 0.72 +0.5
379,906 - CCNA_00363 0.75 -0.1
379,950 + CCNA_00363 0.81 -0.3
379,958 - CCNA_00363 0.82 +0.3
380,003 + CCNA_00363 0.87 +0.1
380,043 + -0.4
380,043 + -0.2
380,043 + +0.8
381,249 - -0.5
381,303 - -0.0
381,348 - -0.1
381,389 + -0.6
381,389 + -0.9
381,435 - +0.4
381,459 + -2.2

Or see this region's nucleotide sequence