Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00306

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00305 and CCNA_00306 are separated by 31 nucleotidesCCNA_00306 and CCNA_00307 overlap by 4 nucleotides CCNA_00305: CCNA_00305 - cobalt-zinc-cadmium resistance protein czcD, at 319,278 to 320,303 _00305 CCNA_00306: CCNA_00306 - lysophospholipid acyltransferase, at 320,335 to 321,048 _00306 CCNA_00307: CCNA_00307 - phospholipid-lipopolysaccharide ABC transporter, at 321,045 to 322,868 _00307 Position (kb) 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2at 319.362 kb on - strandat 319.362 kb on - strandat 319.376 kb on - strandat 319.390 kb on + strand, within CCNA_00305at 319.411 kb on + strand, within CCNA_00305at 319.419 kb on - strand, within CCNA_00305at 319.465 kb on + strand, within CCNA_00305at 319.478 kb on - strand, within CCNA_00305at 319.487 kb on - strand, within CCNA_00305at 319.487 kb on - strand, within CCNA_00305at 319.487 kb on - strand, within CCNA_00305at 319.558 kb on - strand, within CCNA_00305at 319.597 kb on - strand, within CCNA_00305at 319.640 kb on + strand, within CCNA_00305at 319.640 kb on + strand, within CCNA_00305at 319.642 kb on - strand, within CCNA_00305at 319.650 kb on + strand, within CCNA_00305at 319.671 kb on + strand, within CCNA_00305at 319.679 kb on - strand, within CCNA_00305at 319.743 kb on - strand, within CCNA_00305at 319.750 kb on - strand, within CCNA_00305at 319.753 kb on + strand, within CCNA_00305at 319.761 kb on - strand, within CCNA_00305at 319.762 kb on - strand, within CCNA_00305at 319.773 kb on + strand, within CCNA_00305at 319.773 kb on + strand, within CCNA_00305at 319.781 kb on - strand, within CCNA_00305at 319.791 kb on + strand, within CCNA_00305at 319.920 kb on - strand, within CCNA_00305at 319.933 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.957 kb on - strand, within CCNA_00305at 319.957 kb on - strand, within CCNA_00305at 319.957 kb on - strand, within CCNA_00305at 319.983 kb on + strand, within CCNA_00305at 319.991 kb on - strand, within CCNA_00305at 319.993 kb on + strand, within CCNA_00305at 320.034 kb on + strand, within CCNA_00305at 320.034 kb on + strand, within CCNA_00305at 320.042 kb on - strand, within CCNA_00305at 320.067 kb on - strand, within CCNA_00305at 320.112 kb on + strand, within CCNA_00305at 320.112 kb on + strand, within CCNA_00305at 320.120 kb on - strand, within CCNA_00305at 320.120 kb on - strand, within CCNA_00305at 320.156 kb on - strand, within CCNA_00305at 320.193 kb on - strand, within CCNA_00305at 320.199 kb on - strand, within CCNA_00305at 320.209 kb on - strandat 320.246 kb on - strandat 320.246 kb on - strandat 320.267 kb on - strandat 320.316 kb on + strandat 320.324 kb on - strandat 320.410 kb on - strand, within CCNA_00306at 320.415 kb on - strand, within CCNA_00306at 320.416 kb on - strand, within CCNA_00306at 320.418 kb on - strand, within CCNA_00306at 320.456 kb on - strand, within CCNA_00306at 320.458 kb on + strand, within CCNA_00306at 320.459 kb on + strand, within CCNA_00306at 320.467 kb on - strand, within CCNA_00306at 320.490 kb on + strand, within CCNA_00306at 320.493 kb on - strand, within CCNA_00306at 320.506 kb on + strand, within CCNA_00306at 320.562 kb on + strand, within CCNA_00306at 320.570 kb on - strand, within CCNA_00306at 320.577 kb on + strand, within CCNA_00306at 320.604 kb on - strand, within CCNA_00306at 320.607 kb on + strand, within CCNA_00306at 320.699 kb on + strand, within CCNA_00306at 320.699 kb on + strand, within CCNA_00306at 320.730 kb on - strand, within CCNA_00306at 320.732 kb on - strand, within CCNA_00306at 320.801 kb on + strand, within CCNA_00306at 320.814 kb on - strand, within CCNA_00306at 320.835 kb on - strand, within CCNA_00306at 320.837 kb on - strand, within CCNA_00306at 320.911 kb on - strand, within CCNA_00306at 320.915 kb on + strand, within CCNA_00306at 320.962 kb on + strand, within CCNA_00306at 320.962 kb on + strand, within CCNA_00306at 320.962 kb on + strand, within CCNA_00306at 320.969 kb on + strand, within CCNA_00306at 321.018 kb on + strandat 321.034 kb on + strandat 321.073 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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319,362 - -0.1
319,362 - +0.3
319,376 - +0.5
319,390 + CCNA_00305 0.11 -1.3
319,411 + CCNA_00305 0.13 +0.5
319,419 - CCNA_00305 0.14 -0.6
319,465 + CCNA_00305 0.18 -1.0
319,478 - CCNA_00305 0.19 -1.2
319,487 - CCNA_00305 0.20 +0.6
319,487 - CCNA_00305 0.20 -0.8
319,487 - CCNA_00305 0.20 +1.2
319,558 - CCNA_00305 0.27 -0.7
319,597 - CCNA_00305 0.31 -0.5
319,640 + CCNA_00305 0.35 -0.6
319,640 + CCNA_00305 0.35 -0.7
319,642 - CCNA_00305 0.35 +1.0
319,650 + CCNA_00305 0.36 -0.6
319,671 + CCNA_00305 0.38 +0.1
319,679 - CCNA_00305 0.39 +0.2
319,743 - CCNA_00305 0.45 -0.4
319,750 - CCNA_00305 0.46 +0.3
319,753 + CCNA_00305 0.46 +0.1
319,761 - CCNA_00305 0.47 -1.0
319,762 - CCNA_00305 0.47 -0.0
319,773 + CCNA_00305 0.48 -0.9
319,773 + CCNA_00305 0.48 +0.2
319,781 - CCNA_00305 0.49 +0.5
319,791 + CCNA_00305 0.50 -1.2
319,920 - CCNA_00305 0.63 -0.2
319,933 + CCNA_00305 0.64 -0.3
319,949 + CCNA_00305 0.65 +0.8
319,949 + CCNA_00305 0.65 -0.2
319,949 + CCNA_00305 0.65 +0.3
319,949 + CCNA_00305 0.65 +1.2
319,949 + CCNA_00305 0.65 +0.7
319,949 + CCNA_00305 0.65 +0.5
319,949 + CCNA_00305 0.65 +0.4
319,949 + CCNA_00305 0.65 -0.5
319,957 - CCNA_00305 0.66 -0.5
319,957 - CCNA_00305 0.66 +0.4
319,957 - CCNA_00305 0.66 -0.4
319,983 + CCNA_00305 0.69 -0.0
319,991 - CCNA_00305 0.69 +0.3
319,993 + CCNA_00305 0.70 -0.6
320,034 + CCNA_00305 0.74 +0.3
320,034 + CCNA_00305 0.74 +1.3
320,042 - CCNA_00305 0.74 -0.8
320,067 - CCNA_00305 0.77 +0.1
320,112 + CCNA_00305 0.81 -0.2
320,112 + CCNA_00305 0.81 -0.1
320,120 - CCNA_00305 0.82 -1.1
320,120 - CCNA_00305 0.82 +0.4
320,156 - CCNA_00305 0.86 +0.8
320,193 - CCNA_00305 0.89 -0.1
320,199 - CCNA_00305 0.90 +0.4
320,209 - -0.5
320,246 - +0.3
320,246 - +0.2
320,267 - -0.7
320,316 + +0.1
320,324 - +0.0
320,410 - CCNA_00306 0.11 -2.5
320,415 - CCNA_00306 0.11 -1.1
320,416 - CCNA_00306 0.11 -0.1
320,418 - CCNA_00306 0.12 +0.1
320,456 - CCNA_00306 0.17 -1.4
320,458 + CCNA_00306 0.17 -1.9
320,459 + CCNA_00306 0.17 +0.6
320,467 - CCNA_00306 0.18 -2.1
320,490 + CCNA_00306 0.22 -1.6
320,493 - CCNA_00306 0.22 -0.6
320,506 + CCNA_00306 0.24 -0.0
320,562 + CCNA_00306 0.32 +0.6
320,570 - CCNA_00306 0.33 -1.6
320,577 + CCNA_00306 0.34 +0.6
320,604 - CCNA_00306 0.38 -1.4
320,607 + CCNA_00306 0.38 -0.1
320,699 + CCNA_00306 0.51 -1.6
320,699 + CCNA_00306 0.51 -2.2
320,730 - CCNA_00306 0.55 -1.4
320,732 - CCNA_00306 0.56 +1.8
320,801 + CCNA_00306 0.65 +0.6
320,814 - CCNA_00306 0.67 -0.0
320,835 - CCNA_00306 0.70 -1.1
320,837 - CCNA_00306 0.70 -2.0
320,911 - CCNA_00306 0.81 -1.0
320,915 + CCNA_00306 0.81 -0.9
320,962 + CCNA_00306 0.88 -0.7
320,962 + CCNA_00306 0.88 +0.3
320,962 + CCNA_00306 0.88 -0.0
320,969 + CCNA_00306 0.89 +0.3
321,018 + -2.1
321,034 + -0.4
321,073 + +0.9

Or see this region's nucleotide sequence