Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00292 and CCNA_00293 overlap by 8 nucleotides CCNA_00293 and CCNA_00294 are separated by 59 nucleotides CCNA_00294 and CCNA_00295 are separated by 25 nucleotides
CCNA_00292: CCNA_00292 - phosphate transport system permease protein pstC, at 306,029 to 307,462
_00292
CCNA_00293: CCNA_00293 - phosphate transport system permease protein pstA, at 307,455 to 308,750
_00293
CCNA_00294: CCNA_00294 - phosphate transport ATP-binding protein pstB, at 308,810 to 309,634
_00294
CCNA_00295: CCNA_00295 - phosphate transport system protein phoU, at 309,660 to 310,352
_00295
Position (kb) 307
308
309 Strain fitness (log2 ratio) -2
-1
0
1
2 at 306.501 kb on - strand, within CCNA_00292 at 306.530 kb on + strand, within CCNA_00292 at 306.581 kb on + strand, within CCNA_00292 at 306.581 kb on + strand, within CCNA_00292 at 306.589 kb on - strand, within CCNA_00292 at 306.655 kb on + strand, within CCNA_00292 at 306.818 kb on + strand, within CCNA_00292 at 306.908 kb on + strand, within CCNA_00292 at 306.928 kb on - strand, within CCNA_00292 at 306.967 kb on - strand, within CCNA_00292 at 307.350 kb on + strand at 307.382 kb on - strand at 307.406 kb on + strand at 307.421 kb on + strand at 307.469 kb on + strand at 307.487 kb on + strand at 307.621 kb on - strand, within CCNA_00293 at 307.758 kb on + strand, within CCNA_00293 at 307.794 kb on + strand, within CCNA_00293 at 308.124 kb on + strand, within CCNA_00293 at 308.136 kb on + strand, within CCNA_00293 at 308.172 kb on - strand, within CCNA_00293 at 308.258 kb on + strand, within CCNA_00293 at 308.442 kb on + strand, within CCNA_00293 at 308.652 kb on - strand at 308.687 kb on - strand at 308.751 kb on - strand at 308.804 kb on - strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.895 kb on - strand, within CCNA_00294 at 309.045 kb on + strand, within CCNA_00294 at 309.248 kb on + strand, within CCNA_00294 at 309.550 kb on + strand, within CCNA_00294
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 306,501 - CCNA_00292 0.33 +2.2 306,530 + CCNA_00292 0.35 +0.3 306,581 + CCNA_00292 0.38 -0.2 306,581 + CCNA_00292 0.38 -0.0 306,589 - CCNA_00292 0.39 +1.3 306,655 + CCNA_00292 0.44 -0.7 306,818 + CCNA_00292 0.55 +0.6 306,908 + CCNA_00292 0.61 +2.2 306,928 - CCNA_00292 0.63 -0.0 306,967 - CCNA_00292 0.65 +1.0 307,350 + +0.6 307,382 - -0.0 307,406 + +0.3 307,421 + +0.4 307,469 + -0.8 307,487 + +0.8 307,621 - CCNA_00293 0.13 -0.7 307,758 + CCNA_00293 0.23 -0.7 307,794 + CCNA_00293 0.26 -1.0 308,124 + CCNA_00293 0.52 -1.3 308,136 + CCNA_00293 0.53 -1.5 308,172 - CCNA_00293 0.55 +0.6 308,258 + CCNA_00293 0.62 -0.6 308,442 + CCNA_00293 0.76 -0.6 308,652 - +0.3 308,687 - -1.1 308,751 - +0.0 308,804 - +0.9 308,806 + -0.0 308,806 + -0.6 308,806 + +0.2 308,806 + +0.1 308,806 + +1.2 308,806 + +0.8 308,806 + +0.9 308,806 + -0.2 308,814 - -1.6 308,814 - -0.6 308,814 - -0.3 308,814 - -0.7 308,814 - -0.8 308,895 - CCNA_00294 0.10 +0.0 309,045 + CCNA_00294 0.28 -1.0 309,248 + CCNA_00294 0.53 -1.9 309,550 + CCNA_00294 0.90 -1.7
Or see this region's nucleotide sequence