Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00292

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00291 and CCNA_00292 are separated by 144 nucleotidesCCNA_00292 and CCNA_00293 overlap by 8 nucleotides CCNA_00291: CCNA_00291 - phosphate regulon sensor protein phoR, at 304,469 to 305,884 _00291 CCNA_00292: CCNA_00292 - phosphate transport system permease protein pstC, at 306,029 to 307,462 _00292 CCNA_00293: CCNA_00293 - phosphate transport system permease protein pstA, at 307,455 to 308,750 _00293 Position (kb) 306 307 308Strain fitness (log2 ratio) -2 -1 0 1 2at 305.033 kb on - strand, within CCNA_00291at 305.033 kb on - strand, within CCNA_00291at 305.087 kb on + strand, within CCNA_00291at 305.092 kb on + strand, within CCNA_00291at 305.097 kb on + strand, within CCNA_00291at 305.105 kb on - strand, within CCNA_00291at 305.122 kb on - strand, within CCNA_00291at 305.137 kb on + strand, within CCNA_00291at 305.145 kb on - strand, within CCNA_00291at 305.145 kb on - strand, within CCNA_00291at 305.147 kb on + strand, within CCNA_00291at 305.158 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.172 kb on - strand, within CCNA_00291at 305.177 kb on - strand, within CCNA_00291at 305.177 kb on - strand, within CCNA_00291at 305.188 kb on + strand, within CCNA_00291at 305.196 kb on - strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.212 kb on + strand, within CCNA_00291at 305.214 kb on - strand, within CCNA_00291at 305.214 kb on - strand, within CCNA_00291at 305.214 kb on - strand, within CCNA_00291at 305.214 kb on - strand, within CCNA_00291at 305.214 kb on - strand, within CCNA_00291at 305.245 kb on + strand, within CCNA_00291at 305.252 kb on - strand, within CCNA_00291at 305.254 kb on + strand, within CCNA_00291at 305.262 kb on - strand, within CCNA_00291at 305.265 kb on + strand, within CCNA_00291at 305.265 kb on + strand, within CCNA_00291at 305.295 kb on - strand, within CCNA_00291at 305.303 kb on - strand, within CCNA_00291at 305.305 kb on + strand, within CCNA_00291at 305.313 kb on - strand, within CCNA_00291at 305.313 kb on - strand, within CCNA_00291at 305.342 kb on - strand, within CCNA_00291at 305.342 kb on - strand, within CCNA_00291at 305.367 kb on + strand, within CCNA_00291at 305.368 kb on - strand, within CCNA_00291at 305.402 kb on - strand, within CCNA_00291at 305.404 kb on + strand, within CCNA_00291at 305.418 kb on - strand, within CCNA_00291at 305.438 kb on + strand, within CCNA_00291at 305.466 kb on + strand, within CCNA_00291at 305.470 kb on - strand, within CCNA_00291at 305.502 kb on - strand, within CCNA_00291at 305.531 kb on + strand, within CCNA_00291at 305.569 kb on + strand, within CCNA_00291at 305.633 kb on + strand, within CCNA_00291at 305.633 kb on + strand, within CCNA_00291at 305.641 kb on - strand, within CCNA_00291at 305.641 kb on - strand, within CCNA_00291at 305.641 kb on - strand, within CCNA_00291at 305.656 kb on - strand, within CCNA_00291at 305.679 kb on - strand, within CCNA_00291at 305.688 kb on - strand, within CCNA_00291at 305.695 kb on - strand, within CCNA_00291at 305.717 kb on + strand, within CCNA_00291at 305.717 kb on + strand, within CCNA_00291at 305.735 kb on + strand, within CCNA_00291at 305.735 kb on + strand, within CCNA_00291at 305.735 kb on + strand, within CCNA_00291at 305.735 kb on + strand, within CCNA_00291at 305.774 kb on + strandat 305.778 kb on + strandat 305.783 kb on + strandat 305.788 kb on + strandat 305.788 kb on + strandat 305.790 kb on - strandat 305.791 kb on - strandat 305.812 kb on + strandat 305.827 kb on - strandat 305.832 kb on - strandat 305.849 kb on - strandat 305.929 kb on - strandat 305.936 kb on + strandat 305.966 kb on + strandat 305.974 kb on - strandat 305.995 kb on + strandat 305.995 kb on + strandat 305.995 kb on + strandat 305.995 kb on + strandat 306.003 kb on - strandat 306.003 kb on - strandat 306.014 kb on + strandat 306.015 kb on + strandat 306.022 kb on - strandat 306.042 kb on - strandat 306.072 kb on - strandat 306.240 kb on - strand, within CCNA_00292at 306.278 kb on + strand, within CCNA_00292at 306.334 kb on + strand, within CCNA_00292at 306.422 kb on + strand, within CCNA_00292at 306.432 kb on - strand, within CCNA_00292at 306.501 kb on - strand, within CCNA_00292at 306.530 kb on + strand, within CCNA_00292at 306.581 kb on + strand, within CCNA_00292at 306.581 kb on + strand, within CCNA_00292at 306.589 kb on - strand, within CCNA_00292at 306.655 kb on + strand, within CCNA_00292at 306.818 kb on + strand, within CCNA_00292at 306.908 kb on + strand, within CCNA_00292at 306.928 kb on - strand, within CCNA_00292at 306.967 kb on - strand, within CCNA_00292at 307.350 kb on + strandat 307.382 kb on - strandat 307.406 kb on + strandat 307.421 kb on + strandat 307.469 kb on + strandat 307.487 kb on + strandat 307.621 kb on - strand, within CCNA_00293at 307.758 kb on + strand, within CCNA_00293at 307.794 kb on + strand, within CCNA_00293at 308.124 kb on + strand, within CCNA_00293at 308.136 kb on + strand, within CCNA_00293at 308.172 kb on - strand, within CCNA_00293at 308.258 kb on + strand, within CCNA_00293at 308.442 kb on + strand, within CCNA_00293

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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305,033 - CCNA_00291 0.40 -1.0
305,033 - CCNA_00291 0.40 -1.2
305,087 + CCNA_00291 0.44 +0.4
305,092 + CCNA_00291 0.44 +0.3
305,097 + CCNA_00291 0.44 +0.2
305,105 - CCNA_00291 0.45 -0.3
305,122 - CCNA_00291 0.46 -0.2
305,137 + CCNA_00291 0.47 +0.4
305,145 - CCNA_00291 0.48 -1.8
305,145 - CCNA_00291 0.48 -0.6
305,147 + CCNA_00291 0.48 -0.2
305,158 + CCNA_00291 0.49 -0.6
305,169 + CCNA_00291 0.49 +0.2
305,169 + CCNA_00291 0.49 +0.6
305,172 - CCNA_00291 0.50 -0.2
305,177 - CCNA_00291 0.50 -1.3
305,177 - CCNA_00291 0.50 -0.6
305,188 + CCNA_00291 0.51 +0.1
305,196 - CCNA_00291 0.51 -1.0
305,206 + CCNA_00291 0.52 -0.5
305,206 + CCNA_00291 0.52 -0.0
305,206 + CCNA_00291 0.52 -0.6
305,206 + CCNA_00291 0.52 -0.9
305,206 + CCNA_00291 0.52 -0.2
305,212 + CCNA_00291 0.52 +0.6
305,214 - CCNA_00291 0.53 -0.6
305,214 - CCNA_00291 0.53 -1.0
305,214 - CCNA_00291 0.53 -0.3
305,214 - CCNA_00291 0.53 +1.6
305,214 - CCNA_00291 0.53 -2.1
305,245 + CCNA_00291 0.55 -0.6
305,252 - CCNA_00291 0.55 +0.8
305,254 + CCNA_00291 0.55 -0.7
305,262 - CCNA_00291 0.56 -1.9
305,265 + CCNA_00291 0.56 -0.7
305,265 + CCNA_00291 0.56 -0.0
305,295 - CCNA_00291 0.58 -0.1
305,303 - CCNA_00291 0.59 -0.6
305,305 + CCNA_00291 0.59 +0.1
305,313 - CCNA_00291 0.60 -1.2
305,313 - CCNA_00291 0.60 -0.1
305,342 - CCNA_00291 0.62 -0.7
305,342 - CCNA_00291 0.62 -0.3
305,367 + CCNA_00291 0.63 +1.4
305,368 - CCNA_00291 0.63 -0.1
305,402 - CCNA_00291 0.66 +0.0
305,404 + CCNA_00291 0.66 -0.4
305,418 - CCNA_00291 0.67 +0.4
305,438 + CCNA_00291 0.68 -0.1
305,466 + CCNA_00291 0.70 -0.0
305,470 - CCNA_00291 0.71 -1.0
305,502 - CCNA_00291 0.73 -1.0
305,531 + CCNA_00291 0.75 -1.1
305,569 + CCNA_00291 0.78 -0.9
305,633 + CCNA_00291 0.82 +0.9
305,633 + CCNA_00291 0.82 -0.1
305,641 - CCNA_00291 0.83 -0.0
305,641 - CCNA_00291 0.83 +2.2
305,641 - CCNA_00291 0.83 -2.4
305,656 - CCNA_00291 0.84 -0.7
305,679 - CCNA_00291 0.85 -0.9
305,688 - CCNA_00291 0.86 -1.5
305,695 - CCNA_00291 0.87 -1.3
305,717 + CCNA_00291 0.88 -0.1
305,717 + CCNA_00291 0.88 -0.6
305,735 + CCNA_00291 0.89 +0.2
305,735 + CCNA_00291 0.89 -0.1
305,735 + CCNA_00291 0.89 +1.6
305,735 + CCNA_00291 0.89 +0.2
305,774 + -0.2
305,778 + +0.6
305,783 + +0.2
305,788 + +0.9
305,788 + -0.3
305,790 - +0.7
305,791 - +0.8
305,812 + -0.4
305,827 - -0.7
305,832 - +1.4
305,849 - -0.9
305,929 - -2.6
305,936 + +0.2
305,966 + +0.6
305,974 - +0.1
305,995 + -0.8
305,995 + +0.0
305,995 + -0.2
305,995 + +1.8
306,003 - -0.4
306,003 - -0.6
306,014 + +0.2
306,015 + -0.3
306,022 - -1.4
306,042 - -0.8
306,072 - +0.6
306,240 - CCNA_00292 0.15 -1.9
306,278 + CCNA_00292 0.17 -0.6
306,334 + CCNA_00292 0.21 +0.3
306,422 + CCNA_00292 0.27 +0.4
306,432 - CCNA_00292 0.28 -1.9
306,501 - CCNA_00292 0.33 +2.2
306,530 + CCNA_00292 0.35 +0.3
306,581 + CCNA_00292 0.38 -0.2
306,581 + CCNA_00292 0.38 -0.0
306,589 - CCNA_00292 0.39 +1.3
306,655 + CCNA_00292 0.44 -0.7
306,818 + CCNA_00292 0.55 +0.6
306,908 + CCNA_00292 0.61 +2.2
306,928 - CCNA_00292 0.63 -0.0
306,967 - CCNA_00292 0.65 +1.0
307,350 + +0.6
307,382 - -0.0
307,406 + +0.3
307,421 + +0.4
307,469 + -0.8
307,487 + +0.8
307,621 - CCNA_00293 0.13 -0.7
307,758 + CCNA_00293 0.23 -0.7
307,794 + CCNA_00293 0.26 -1.0
308,124 + CCNA_00293 0.52 -1.3
308,136 + CCNA_00293 0.53 -1.5
308,172 - CCNA_00293 0.55 +0.6
308,258 + CCNA_00293 0.62 -0.6
308,442 + CCNA_00293 0.76 -0.6

Or see this region's nucleotide sequence