Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00255 and CCNA_00256 are separated by 18 nucleotides CCNA_00256 and CCNA_00257 are separated by 118 nucleotides CCNA_00257 and CCNA_00259 are separated by 342 nucleotides
CCNA_00255: CCNA_00255 - esterase, at 268,063 to 269,187
_00255
CCNA_00256: CCNA_00256 - pyridoxine kinase, at 269,206 to 270,057
_00256
CCNA_00257: CCNA_00257 - adenosylhomocysteinase, at 270,176 to 271,567
_00257
CCNA_00259: CCNA_00259 - hypothetical protein, at 271,910 to 272,620
_00259
Position (kb) 270
271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 269.193 kb on + strand at 269.193 kb on + strand at 269.196 kb on - strand at 269.202 kb on - strand at 269.204 kb on + strand at 269.212 kb on - strand at 269.269 kb on + strand at 269.320 kb on - strand, within CCNA_00256 at 269.356 kb on + strand, within CCNA_00256 at 269.356 kb on + strand, within CCNA_00256 at 269.364 kb on - strand, within CCNA_00256 at 269.364 kb on - strand, within CCNA_00256 at 269.364 kb on - strand, within CCNA_00256 at 269.364 kb on - strand, within CCNA_00256 at 269.364 kb on - strand, within CCNA_00256 at 269.364 kb on - strand, within CCNA_00256 at 269.423 kb on - strand, within CCNA_00256 at 269.425 kb on + strand, within CCNA_00256 at 269.429 kb on + strand, within CCNA_00256 at 269.429 kb on + strand, within CCNA_00256 at 269.429 kb on + strand, within CCNA_00256 at 269.433 kb on - strand, within CCNA_00256 at 269.475 kb on - strand, within CCNA_00256 at 269.490 kb on - strand, within CCNA_00256 at 269.490 kb on - strand, within CCNA_00256 at 269.494 kb on + strand, within CCNA_00256 at 269.494 kb on + strand, within CCNA_00256 at 269.499 kb on + strand, within CCNA_00256 at 269.501 kb on + strand, within CCNA_00256 at 269.504 kb on + strand, within CCNA_00256 at 269.504 kb on + strand, within CCNA_00256 at 269.504 kb on + strand, within CCNA_00256 at 269.507 kb on - strand, within CCNA_00256 at 269.507 kb on - strand, within CCNA_00256 at 269.507 kb on - strand, within CCNA_00256 at 269.512 kb on - strand, within CCNA_00256 at 269.519 kb on + strand, within CCNA_00256 at 269.600 kb on - strand, within CCNA_00256 at 269.602 kb on - strand, within CCNA_00256 at 269.602 kb on - strand, within CCNA_00256 at 269.634 kb on + strand, within CCNA_00256 at 269.644 kb on + strand, within CCNA_00256 at 269.679 kb on - strand, within CCNA_00256 at 269.679 kb on - strand, within CCNA_00256 at 269.680 kb on - strand, within CCNA_00256 at 269.725 kb on + strand, within CCNA_00256 at 269.733 kb on - strand, within CCNA_00256 at 269.733 kb on - strand, within CCNA_00256 at 269.733 kb on - strand, within CCNA_00256 at 269.765 kb on + strand, within CCNA_00256 at 269.773 kb on - strand, within CCNA_00256 at 269.799 kb on - strand, within CCNA_00256 at 269.801 kb on - strand, within CCNA_00256 at 269.827 kb on - strand, within CCNA_00256 at 269.876 kb on + strand, within CCNA_00256 at 269.884 kb on - strand, within CCNA_00256 at 269.969 kb on + strand, within CCNA_00256 at 269.969 kb on + strand, within CCNA_00256 at 269.969 kb on + strand, within CCNA_00256 at 269.969 kb on + strand, within CCNA_00256 at 269.969 kb on + strand, within CCNA_00256 at 269.977 kb on - strand at 269.977 kb on - strand at 269.977 kb on - strand at 269.977 kb on - strand at 269.977 kb on - strand at 269.987 kb on + strand at 269.987 kb on + strand at 269.992 kb on + strand at 269.992 kb on + strand at 269.992 kb on + strand at 269.995 kb on - strand at 270.000 kb on - strand at 270.030 kb on + strand at 270.040 kb on + strand at 270.048 kb on - strand at 270.048 kb on - strand at 270.082 kb on - strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.094 kb on - strand at 270.097 kb on - strand at 270.162 kb on + strand at 270.182 kb on - strand at 270.198 kb on - strand at 270.203 kb on - strand at 270.219 kb on - strand at 270.240 kb on + strand at 270.248 kb on - strand at 270.328 kb on - strand, within CCNA_00257 at 270.329 kb on - strand, within CCNA_00257 at 270.378 kb on - strand, within CCNA_00257 at 270.390 kb on - strand, within CCNA_00257 at 270.533 kb on + strand, within CCNA_00257 at 270.583 kb on - strand, within CCNA_00257 at 270.636 kb on - strand, within CCNA_00257 at 270.695 kb on - strand, within CCNA_00257 at 270.731 kb on - strand, within CCNA_00257 at 270.732 kb on + strand, within CCNA_00257 at 270.736 kb on - strand, within CCNA_00257 at 270.773 kb on - strand, within CCNA_00257 at 270.817 kb on - strand, within CCNA_00257 at 270.846 kb on - strand, within CCNA_00257 at 270.864 kb on + strand, within CCNA_00257 at 270.888 kb on + strand, within CCNA_00257 at 270.896 kb on - strand, within CCNA_00257 at 270.896 kb on - strand, within CCNA_00257 at 270.903 kb on + strand, within CCNA_00257 at 270.973 kb on + strand, within CCNA_00257 at 270.977 kb on - strand, within CCNA_00257 at 270.991 kb on - strand, within CCNA_00257 at 271.011 kb on - strand, within CCNA_00257 at 271.024 kb on - strand, within CCNA_00257 at 271.115 kb on + strand, within CCNA_00257 at 271.123 kb on - strand, within CCNA_00257 at 271.123 kb on - strand, within CCNA_00257 at 271.160 kb on + strand, within CCNA_00257 at 271.168 kb on - strand, within CCNA_00257 at 271.168 kb on - strand, within CCNA_00257 at 271.173 kb on - strand, within CCNA_00257 at 271.200 kb on + strand, within CCNA_00257 at 271.247 kb on + strand, within CCNA_00257 at 271.288 kb on - strand, within CCNA_00257 at 271.319 kb on + strand, within CCNA_00257 at 271.322 kb on - strand, within CCNA_00257 at 271.322 kb on - strand, within CCNA_00257 at 271.327 kb on - strand, within CCNA_00257 at 271.327 kb on - strand, within CCNA_00257 at 271.390 kb on + strand, within CCNA_00257 at 271.407 kb on + strand, within CCNA_00257 at 271.586 kb on + strand at 271.610 kb on - strand at 271.650 kb on + strand at 271.689 kb on + strand at 271.718 kb on + strand at 271.722 kb on + strand at 271.738 kb on - strand at 271.741 kb on - strand at 271.741 kb on - strand at 271.759 kb on - strand at 271.761 kb on + strand at 271.766 kb on + strand at 271.769 kb on - strand at 271.769 kb on - strand at 271.769 kb on - strand at 271.769 kb on - strand at 271.774 kb on - strand at 271.809 kb on + strand at 271.809 kb on + strand at 271.819 kb on - strand at 271.824 kb on + strand at 271.834 kb on + strand at 271.839 kb on + strand at 271.839 kb on + strand at 271.839 kb on + strand at 271.839 kb on + strand at 271.842 kb on - strand at 271.842 kb on - strand at 271.844 kb on + strand at 271.844 kb on + strand at 271.844 kb on + strand at 271.844 kb on + strand at 271.847 kb on - strand at 271.847 kb on - strand at 271.847 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.869 kb on + strand at 271.877 kb on - strand at 271.891 kb on + strand at 271.899 kb on - strand at 271.912 kb on + strand at 271.919 kb on + strand at 271.919 kb on + strand at 271.924 kb on + strand at 271.951 kb on - strand at 271.970 kb on + strand at 271.978 kb on - strand at 271.991 kb on + strand, within CCNA_00259 at 271.991 kb on + strand, within CCNA_00259 at 272.005 kb on + strand, within CCNA_00259 at 272.029 kb on + strand, within CCNA_00259 at 272.037 kb on - strand, within CCNA_00259 at 272.049 kb on + strand, within CCNA_00259 at 272.049 kb on + strand, within CCNA_00259 at 272.049 kb on + strand, within CCNA_00259 at 272.049 kb on + strand, within CCNA_00259 at 272.057 kb on - strand, within CCNA_00259 at 272.057 kb on - strand, within CCNA_00259 at 272.093 kb on - strand, within CCNA_00259 at 272.110 kb on + strand, within CCNA_00259 at 272.110 kb on + strand, within CCNA_00259 at 272.110 kb on + strand, within CCNA_00259 at 272.117 kb on + strand, within CCNA_00259 at 272.117 kb on + strand, within CCNA_00259 at 272.117 kb on + strand, within CCNA_00259 at 272.118 kb on - strand, within CCNA_00259 at 272.125 kb on - strand, within CCNA_00259 at 272.125 kb on - strand, within CCNA_00259 at 272.130 kb on - strand, within CCNA_00259 at 272.137 kb on - strand, within CCNA_00259 at 272.188 kb on + strand, within CCNA_00259 at 272.188 kb on + strand, within CCNA_00259 at 272.188 kb on + strand, within CCNA_00259 at 272.191 kb on - strand, within CCNA_00259 at 272.196 kb on - strand, within CCNA_00259 at 272.196 kb on - strand, within CCNA_00259 at 272.218 kb on + strand, within CCNA_00259 at 272.265 kb on + strand, within CCNA_00259 at 272.266 kb on - strand, within CCNA_00259 at 272.276 kb on + strand, within CCNA_00259 at 272.315 kb on + strand, within CCNA_00259 at 272.342 kb on + strand, within CCNA_00259 at 272.347 kb on + strand, within CCNA_00259 at 272.399 kb on + strand, within CCNA_00259 at 272.408 kb on + strand, within CCNA_00259 at 272.420 kb on + strand, within CCNA_00259 at 272.429 kb on + strand, within CCNA_00259 at 272.459 kb on - strand, within CCNA_00259 at 272.492 kb on + strand, within CCNA_00259 at 272.519 kb on - strand, within CCNA_00259 at 272.519 kb on - strand, within CCNA_00259 at 272.522 kb on + strand, within CCNA_00259 at 272.522 kb on + strand, within CCNA_00259 at 272.522 kb on + strand, within CCNA_00259 at 272.534 kb on + strand, within CCNA_00259 at 272.543 kb on + strand, within CCNA_00259
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 269,193 + +0.2 269,193 + +0.3 269,196 - +0.2 269,202 - -0.2 269,204 + -0.2 269,212 - +0.4 269,269 + +0.0 269,320 - CCNA_00256 0.13 -0.0 269,356 + CCNA_00256 0.18 -0.1 269,356 + CCNA_00256 0.18 -1.4 269,364 - CCNA_00256 0.19 +0.4 269,364 - CCNA_00256 0.19 +0.3 269,364 - CCNA_00256 0.19 +0.4 269,364 - CCNA_00256 0.19 +0.1 269,364 - CCNA_00256 0.19 +0.7 269,364 - CCNA_00256 0.19 +0.6 269,423 - CCNA_00256 0.25 +1.0 269,425 + CCNA_00256 0.26 -0.5 269,429 + CCNA_00256 0.26 -0.2 269,429 + CCNA_00256 0.26 +1.1 269,429 + CCNA_00256 0.26 -0.9 269,433 - CCNA_00256 0.27 +0.3 269,475 - CCNA_00256 0.32 +1.4 269,490 - CCNA_00256 0.33 +1.0 269,490 - CCNA_00256 0.33 +0.7 269,494 + CCNA_00256 0.34 -0.7 269,494 + CCNA_00256 0.34 -0.2 269,499 + CCNA_00256 0.34 -1.2 269,501 + CCNA_00256 0.35 -0.2 269,504 + CCNA_00256 0.35 -0.3 269,504 + CCNA_00256 0.35 +0.1 269,504 + CCNA_00256 0.35 +0.5 269,507 - CCNA_00256 0.35 -0.0 269,507 - CCNA_00256 0.35 +0.3 269,507 - CCNA_00256 0.35 +1.8 269,512 - CCNA_00256 0.36 +0.7 269,519 + CCNA_00256 0.37 -0.1 269,600 - CCNA_00256 0.46 +1.6 269,602 - CCNA_00256 0.46 -0.2 269,602 - CCNA_00256 0.46 +0.1 269,634 + CCNA_00256 0.50 -0.3 269,644 + CCNA_00256 0.51 +0.0 269,679 - CCNA_00256 0.56 +0.1 269,679 - CCNA_00256 0.56 +0.7 269,680 - CCNA_00256 0.56 +0.0 269,725 + CCNA_00256 0.61 -0.9 269,733 - CCNA_00256 0.62 +0.5 269,733 - CCNA_00256 0.62 +0.8 269,733 - CCNA_00256 0.62 +0.3 269,765 + CCNA_00256 0.66 -0.5 269,773 - CCNA_00256 0.67 -0.1 269,799 - CCNA_00256 0.70 -0.8 269,801 - CCNA_00256 0.70 +0.6 269,827 - CCNA_00256 0.73 +0.1 269,876 + CCNA_00256 0.79 -0.4 269,884 - CCNA_00256 0.80 +0.7 269,969 + CCNA_00256 0.90 -1.9 269,969 + CCNA_00256 0.90 -0.1 269,969 + CCNA_00256 0.90 -0.1 269,969 + CCNA_00256 0.90 -1.5 269,969 + CCNA_00256 0.90 -0.9 269,977 - +0.4 269,977 - -0.8 269,977 - +0.2 269,977 - -0.4 269,977 - +0.2 269,987 + -0.5 269,987 + +0.2 269,992 + -0.6 269,992 + -0.1 269,992 + +0.5 269,995 - -0.1 270,000 - +0.5 270,030 + -0.3 270,040 + -0.4 270,048 - -0.2 270,048 - -0.0 270,082 - +0.5 270,084 + -0.3 270,084 + -0.5 270,084 + +2.3 270,084 + -0.6 270,084 + +0.6 270,084 + +0.7 270,084 + +1.3 270,084 + -0.2 270,084 + -0.2 270,092 - +0.7 270,092 - +0.3 270,092 - -0.3 270,092 - +0.8 270,092 - +0.2 270,092 - +0.2 270,094 - +0.2 270,097 - -0.2 270,162 + +0.4 270,182 - +0.3 270,198 - -0.8 270,203 - -3.3 270,219 - -2.0 270,240 + -0.5 270,248 - -2.9 270,328 - CCNA_00257 0.11 -0.9 270,329 - CCNA_00257 0.11 -0.1 270,378 - CCNA_00257 0.15 -1.1 270,390 - CCNA_00257 0.15 +0.1 270,533 + CCNA_00257 0.26 -2.1 270,583 - CCNA_00257 0.29 -1.2 270,636 - CCNA_00257 0.33 -1.1 270,695 - CCNA_00257 0.37 -0.5 270,731 - CCNA_00257 0.40 -0.9 270,732 + CCNA_00257 0.40 -2.0 270,736 - CCNA_00257 0.40 -0.6 270,773 - CCNA_00257 0.43 +0.3 270,817 - CCNA_00257 0.46 +0.4 270,846 - CCNA_00257 0.48 -0.7 270,864 + CCNA_00257 0.49 -1.2 270,888 + CCNA_00257 0.51 -0.4 270,896 - CCNA_00257 0.52 -1.5 270,896 - CCNA_00257 0.52 -0.6 270,903 + CCNA_00257 0.52 -1.5 270,973 + CCNA_00257 0.57 +0.6 270,977 - CCNA_00257 0.58 -0.8 270,991 - CCNA_00257 0.59 -1.8 271,011 - CCNA_00257 0.60 -1.1 271,024 - CCNA_00257 0.61 -0.9 271,115 + CCNA_00257 0.67 -0.5 271,123 - CCNA_00257 0.68 -1.2 271,123 - CCNA_00257 0.68 +0.1 271,160 + CCNA_00257 0.71 -0.0 271,168 - CCNA_00257 0.71 -0.0 271,168 - CCNA_00257 0.71 +1.0 271,173 - CCNA_00257 0.72 -1.5 271,200 + CCNA_00257 0.74 -1.2 271,247 + CCNA_00257 0.77 -0.0 271,288 - CCNA_00257 0.80 +0.3 271,319 + CCNA_00257 0.82 -0.1 271,322 - CCNA_00257 0.82 -1.9 271,322 - CCNA_00257 0.82 -1.4 271,327 - CCNA_00257 0.83 -0.7 271,327 - CCNA_00257 0.83 -0.0 271,390 + CCNA_00257 0.87 -2.3 271,407 + CCNA_00257 0.88 -1.5 271,586 + -0.9 271,610 - -0.3 271,650 + +0.2 271,689 + +0.8 271,718 + +0.2 271,722 + +0.3 271,738 - -0.2 271,741 - -1.1 271,741 - -1.4 271,759 - -1.7 271,761 + -0.0 271,766 + -0.4 271,769 - -0.3 271,769 - -1.1 271,769 - +0.5 271,769 - +0.5 271,774 - +1.1 271,809 + +1.6 271,809 + -0.0 271,819 - +0.1 271,824 + +1.0 271,834 + -0.4 271,839 + +0.1 271,839 + -0.6 271,839 + +0.1 271,839 + -2.1 271,842 - -0.2 271,842 - +1.1 271,844 + -0.4 271,844 + -0.9 271,844 + +0.5 271,844 + -0.5 271,847 - +0.1 271,847 - -0.1 271,847 - +0.4 271,852 - +1.6 271,852 - -0.7 271,852 - -0.4 271,852 - +0.2 271,852 - +0.3 271,852 - -0.0 271,852 - +0.4 271,869 + -0.2 271,877 - +0.1 271,891 + -0.2 271,899 - -0.2 271,912 + -1.9 271,919 + -2.2 271,919 + -1.2 271,924 + -1.2 271,951 - -0.1 271,970 + -1.4 271,978 - -1.1 271,991 + CCNA_00259 0.11 +1.4 271,991 + CCNA_00259 0.11 -0.5 272,005 + CCNA_00259 0.13 -0.1 272,029 + CCNA_00259 0.17 -0.1 272,037 - CCNA_00259 0.18 -0.2 272,049 + CCNA_00259 0.20 -0.7 272,049 + CCNA_00259 0.20 +0.3 272,049 + CCNA_00259 0.20 -0.3 272,049 + CCNA_00259 0.20 -1.7 272,057 - CCNA_00259 0.21 +1.6 272,057 - CCNA_00259 0.21 +0.6 272,093 - CCNA_00259 0.26 +0.2 272,110 + CCNA_00259 0.28 -1.1 272,110 + CCNA_00259 0.28 -0.3 272,110 + CCNA_00259 0.28 +0.7 272,117 + CCNA_00259 0.29 -1.2 272,117 + CCNA_00259 0.29 +0.3 272,117 + CCNA_00259 0.29 -0.1 272,118 - CCNA_00259 0.29 -0.3 272,125 - CCNA_00259 0.30 +0.3 272,125 - CCNA_00259 0.30 +0.6 272,130 - CCNA_00259 0.31 +0.4 272,137 - CCNA_00259 0.32 -0.4 272,188 + CCNA_00259 0.39 +0.1 272,188 + CCNA_00259 0.39 -1.9 272,188 + CCNA_00259 0.39 -0.7 272,191 - CCNA_00259 0.40 +0.3 272,196 - CCNA_00259 0.40 +0.7 272,196 - CCNA_00259 0.40 -1.6 272,218 + CCNA_00259 0.43 +0.1 272,265 + CCNA_00259 0.50 +0.8 272,266 - CCNA_00259 0.50 +0.5 272,276 + CCNA_00259 0.51 -0.2 272,315 + CCNA_00259 0.57 -0.1 272,342 + CCNA_00259 0.61 -0.9 272,347 + CCNA_00259 0.61 -1.0 272,399 + CCNA_00259 0.69 -0.5 272,408 + CCNA_00259 0.70 +0.3 272,420 + CCNA_00259 0.72 -1.2 272,429 + CCNA_00259 0.73 -0.8 272,459 - CCNA_00259 0.77 -1.7 272,492 + CCNA_00259 0.82 -0.2 272,519 - CCNA_00259 0.86 -0.6 272,519 - CCNA_00259 0.86 +0.1 272,522 + CCNA_00259 0.86 -0.3 272,522 + CCNA_00259 0.86 +0.6 272,522 + CCNA_00259 0.86 -0.2 272,534 + CCNA_00259 0.88 +0.1 272,543 + CCNA_00259 0.89 +1.3
Or see this region's nucleotide sequence