Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00252

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00250 and CCNA_00251 are separated by 48 nucleotidesCCNA_00251 and CCNA_00252 are separated by 111 nucleotidesCCNA_00252 and CCNA_00253 are separated by 253 nucleotides CCNA_00250: CCNA_00250 - poly(3-hydroxyalkanoate) depolymerase, at 261,642 to 262,904 _00250 CCNA_00251: CCNA_00251 - zinc metalloprotease, at 262,953 to 263,672 _00251 CCNA_00252: CCNA_00252 - multimodular transpeptidase-transglycosylase PbpX, at 263,784 to 265,745 _00252 CCNA_00253: CCNA_00253 - aspartate-semialdehyde dehydrogenase, at 265,999 to 267,027 _00253 Position (kb) 263 264 265 266Strain fitness (log2 ratio) -2 -1 0 1 2at 262.790 kb on + strandat 262.790 kb on + strandat 262.793 kb on - strandat 262.793 kb on - strandat 262.800 kb on + strandat 262.804 kb on + strandat 262.812 kb on - strandat 262.822 kb on - strandat 262.841 kb on + strandat 262.907 kb on - strandat 262.942 kb on + strandat 262.950 kb on - strandat 262.950 kb on - strandat 263.021 kb on + strandat 263.069 kb on + strand, within CCNA_00251at 263.069 kb on + strand, within CCNA_00251at 263.077 kb on - strand, within CCNA_00251at 263.082 kb on - strand, within CCNA_00251at 263.138 kb on + strand, within CCNA_00251at 263.243 kb on + strand, within CCNA_00251at 263.272 kb on - strand, within CCNA_00251at 263.272 kb on - strand, within CCNA_00251at 263.340 kb on + strand, within CCNA_00251at 263.340 kb on + strand, within CCNA_00251at 263.382 kb on + strand, within CCNA_00251at 263.382 kb on + strand, within CCNA_00251at 263.382 kb on + strand, within CCNA_00251at 263.385 kb on - strand, within CCNA_00251at 263.390 kb on - strand, within CCNA_00251at 263.395 kb on - strand, within CCNA_00251at 263.410 kb on - strand, within CCNA_00251at 263.416 kb on - strand, within CCNA_00251at 263.455 kb on + strand, within CCNA_00251at 263.552 kb on + strand, within CCNA_00251at 263.552 kb on + strand, within CCNA_00251at 263.576 kb on + strand, within CCNA_00251at 263.576 kb on + strand, within CCNA_00251at 263.576 kb on + strand, within CCNA_00251at 263.578 kb on + strand, within CCNA_00251at 263.595 kb on + strand, within CCNA_00251at 263.631 kb on - strandat 263.646 kb on + strandat 263.651 kb on + strandat 263.652 kb on + strandat 263.652 kb on - strandat 263.661 kb on + strandat 263.710 kb on + strandat 263.718 kb on - strandat 263.720 kb on + strandat 263.732 kb on + strandat 263.734 kb on - strandat 263.744 kb on + strandat 263.760 kb on + strandat 263.782 kb on + strandat 263.785 kb on - strandat 263.785 kb on - strandat 263.790 kb on - strandat 263.834 kb on - strandat 263.834 kb on - strandat 263.891 kb on + strandat 263.891 kb on + strandat 263.899 kb on - strandat 263.928 kb on - strandat 263.932 kb on - strandat 263.979 kb on - strandat 264.027 kb on + strand, within CCNA_00252at 264.085 kb on + strand, within CCNA_00252at 264.085 kb on + strand, within CCNA_00252at 264.086 kb on - strand, within CCNA_00252at 264.093 kb on - strand, within CCNA_00252at 264.149 kb on + strand, within CCNA_00252at 264.170 kb on - strand, within CCNA_00252at 264.193 kb on - strand, within CCNA_00252at 264.228 kb on + strand, within CCNA_00252at 264.248 kb on + strand, within CCNA_00252at 264.282 kb on - strand, within CCNA_00252at 264.292 kb on + strand, within CCNA_00252at 264.300 kb on - strand, within CCNA_00252at 264.306 kb on - strand, within CCNA_00252at 264.336 kb on + strand, within CCNA_00252at 264.336 kb on + strand, within CCNA_00252at 264.339 kb on - strand, within CCNA_00252at 264.344 kb on - strand, within CCNA_00252at 264.344 kb on - strand, within CCNA_00252at 264.397 kb on - strand, within CCNA_00252at 264.397 kb on - strand, within CCNA_00252at 264.470 kb on - strand, within CCNA_00252at 264.481 kb on + strand, within CCNA_00252at 264.503 kb on - strand, within CCNA_00252at 264.506 kb on + strand, within CCNA_00252at 264.524 kb on - strand, within CCNA_00252at 264.545 kb on - strand, within CCNA_00252at 264.575 kb on - strand, within CCNA_00252at 264.610 kb on + strand, within CCNA_00252at 264.618 kb on - strand, within CCNA_00252at 264.657 kb on - strand, within CCNA_00252at 264.780 kb on + strand, within CCNA_00252at 264.846 kb on + strand, within CCNA_00252at 264.913 kb on + strand, within CCNA_00252at 264.921 kb on - strand, within CCNA_00252at 264.959 kb on - strand, within CCNA_00252at 265.008 kb on - strand, within CCNA_00252at 265.061 kb on - strand, within CCNA_00252at 265.145 kb on + strand, within CCNA_00252at 265.219 kb on + strand, within CCNA_00252at 265.224 kb on + strand, within CCNA_00252at 265.255 kb on - strand, within CCNA_00252at 265.261 kb on + strand, within CCNA_00252at 265.265 kb on + strand, within CCNA_00252at 265.265 kb on + strand, within CCNA_00252at 265.274 kb on - strand, within CCNA_00252at 265.301 kb on - strand, within CCNA_00252at 265.314 kb on - strand, within CCNA_00252at 265.317 kb on + strand, within CCNA_00252at 265.324 kb on - strand, within CCNA_00252at 265.364 kb on + strand, within CCNA_00252at 265.402 kb on + strand, within CCNA_00252at 265.403 kb on - strand, within CCNA_00252at 265.410 kb on - strand, within CCNA_00252at 265.422 kb on - strand, within CCNA_00252at 265.505 kb on + strand, within CCNA_00252at 265.532 kb on + strand, within CCNA_00252at 265.542 kb on - strand, within CCNA_00252at 265.552 kb on - strandat 265.558 kb on + strandat 265.570 kb on + strandat 265.576 kb on + strandat 265.579 kb on + strandat 265.594 kb on - strandat 265.619 kb on - strandat 265.641 kb on + strandat 265.701 kb on - strandat 265.750 kb on + strandat 265.764 kb on + strandat 265.771 kb on + strandat 265.786 kb on + strandat 265.792 kb on - strandat 265.794 kb on - strandat 265.806 kb on - strandat 265.895 kb on - strandat 265.982 kb on + strandat 265.982 kb on + strandat 265.982 kb on + strandat 265.982 kb on + strandat 265.984 kb on + strandat 265.984 kb on + strandat 265.984 kb on + strandat 265.984 kb on + strandat 265.984 kb on + strandat 265.990 kb on - strandat 265.990 kb on - strandat 265.990 kb on - strandat 265.990 kb on - strandat 265.990 kb on - strandat 265.992 kb on - strandat 265.992 kb on - strandat 265.992 kb on - strandat 266.009 kb on - strandat 266.109 kb on + strand, within CCNA_00253at 266.151 kb on + strand, within CCNA_00253at 266.158 kb on + strand, within CCNA_00253at 266.159 kb on - strand, within CCNA_00253at 266.164 kb on + strand, within CCNA_00253at 266.173 kb on - strand, within CCNA_00253at 266.184 kb on + strand, within CCNA_00253at 266.205 kb on + strand, within CCNA_00253at 266.226 kb on + strand, within CCNA_00253at 266.287 kb on - strand, within CCNA_00253at 266.288 kb on - strand, within CCNA_00253at 266.289 kb on + strand, within CCNA_00253at 266.307 kb on - strand, within CCNA_00253at 266.330 kb on - strand, within CCNA_00253at 266.349 kb on - strand, within CCNA_00253at 266.374 kb on + strand, within CCNA_00253at 266.405 kb on - strand, within CCNA_00253at 266.430 kb on + strand, within CCNA_00253at 266.430 kb on + strand, within CCNA_00253at 266.438 kb on - strand, within CCNA_00253at 266.438 kb on - strand, within CCNA_00253at 266.438 kb on - strand, within CCNA_00253at 266.438 kb on - strand, within CCNA_00253at 266.438 kb on - strand, within CCNA_00253at 266.444 kb on - strand, within CCNA_00253at 266.468 kb on - strand, within CCNA_00253at 266.482 kb on + strand, within CCNA_00253at 266.490 kb on + strand, within CCNA_00253at 266.498 kb on - strand, within CCNA_00253at 266.498 kb on - strand, within CCNA_00253at 266.498 kb on - strand, within CCNA_00253at 266.514 kb on + strand, within CCNA_00253at 266.514 kb on + strand, within CCNA_00253at 266.522 kb on - strand, within CCNA_00253at 266.522 kb on - strand, within CCNA_00253at 266.522 kb on - strand, within CCNA_00253at 266.522 kb on - strand, within CCNA_00253at 266.522 kb on - strand, within CCNA_00253at 266.522 kb on - strand, within CCNA_00253at 266.522 kb on - strand, within CCNA_00253at 266.522 kb on - strand, within CCNA_00253at 266.533 kb on - strand, within CCNA_00253at 266.533 kb on - strand, within CCNA_00253at 266.581 kb on - strand, within CCNA_00253at 266.637 kb on - strand, within CCNA_00253at 266.714 kb on - strand, within CCNA_00253at 266.720 kb on + strand, within CCNA_00253

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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262,790 + +0.4
262,790 + -1.9
262,793 - +0.1
262,793 - +1.1
262,800 + +0.0
262,804 + +0.1
262,812 - -0.7
262,822 - -0.5
262,841 + +0.6
262,907 - -2.5
262,942 + -0.7
262,950 - +0.6
262,950 - -1.2
263,021 + +0.5
263,069 + CCNA_00251 0.16 -0.4
263,069 + CCNA_00251 0.16 -0.6
263,077 - CCNA_00251 0.17 +0.9
263,082 - CCNA_00251 0.18 -1.1
263,138 + CCNA_00251 0.26 +0.1
263,243 + CCNA_00251 0.40 -0.4
263,272 - CCNA_00251 0.44 -2.2
263,272 - CCNA_00251 0.44 -0.5
263,340 + CCNA_00251 0.54 +0.4
263,340 + CCNA_00251 0.54 -0.1
263,382 + CCNA_00251 0.60 +0.4
263,382 + CCNA_00251 0.60 -0.0
263,382 + CCNA_00251 0.60 -0.1
263,385 - CCNA_00251 0.60 +0.6
263,390 - CCNA_00251 0.61 +0.1
263,395 - CCNA_00251 0.61 -0.1
263,410 - CCNA_00251 0.63 +0.8
263,416 - CCNA_00251 0.64 -1.2
263,455 + CCNA_00251 0.70 -0.7
263,552 + CCNA_00251 0.83 +0.3
263,552 + CCNA_00251 0.83 +0.4
263,576 + CCNA_00251 0.87 -0.1
263,576 + CCNA_00251 0.87 -0.4
263,576 + CCNA_00251 0.87 -0.2
263,578 + CCNA_00251 0.87 -1.0
263,595 + CCNA_00251 0.89 +0.8
263,631 - +0.1
263,646 + -1.2
263,651 + -0.3
263,652 + -0.1
263,652 - +0.7
263,661 + +0.3
263,710 + -0.7
263,718 - +0.3
263,720 + +0.4
263,732 + +0.0
263,734 - +0.4
263,744 + -0.0
263,760 + +0.2
263,782 + +0.3
263,785 - +0.2
263,785 - +0.1
263,790 - +0.2
263,834 - -1.4
263,834 - +0.0
263,891 + +0.4
263,891 + -0.0
263,899 - -0.1
263,928 - +0.9
263,932 - -0.2
263,979 - +0.1
264,027 + CCNA_00252 0.12 -0.3
264,085 + CCNA_00252 0.15 -1.1
264,085 + CCNA_00252 0.15 -1.3
264,086 - CCNA_00252 0.15 -0.3
264,093 - CCNA_00252 0.16 -0.3
264,149 + CCNA_00252 0.19 -1.2
264,170 - CCNA_00252 0.20 +0.7
264,193 - CCNA_00252 0.21 +1.2
264,228 + CCNA_00252 0.23 -0.6
264,248 + CCNA_00252 0.24 -0.9
264,282 - CCNA_00252 0.25 -0.7
264,292 + CCNA_00252 0.26 -0.4
264,300 - CCNA_00252 0.26 +0.6
264,306 - CCNA_00252 0.27 -1.3
264,336 + CCNA_00252 0.28 -1.4
264,336 + CCNA_00252 0.28 -1.2
264,339 - CCNA_00252 0.28 +0.1
264,344 - CCNA_00252 0.29 +0.1
264,344 - CCNA_00252 0.29 +0.6
264,397 - CCNA_00252 0.31 +1.8
264,397 - CCNA_00252 0.31 -0.6
264,470 - CCNA_00252 0.35 +1.6
264,481 + CCNA_00252 0.36 -0.4
264,503 - CCNA_00252 0.37 +0.8
264,506 + CCNA_00252 0.37 +0.3
264,524 - CCNA_00252 0.38 +0.8
264,545 - CCNA_00252 0.39 -0.4
264,575 - CCNA_00252 0.40 +0.3
264,610 + CCNA_00252 0.42 -0.7
264,618 - CCNA_00252 0.43 +0.3
264,657 - CCNA_00252 0.44 +0.1
264,780 + CCNA_00252 0.51 -2.3
264,846 + CCNA_00252 0.54 -1.1
264,913 + CCNA_00252 0.58 +1.3
264,921 - CCNA_00252 0.58 -0.4
264,959 - CCNA_00252 0.60 -0.5
265,008 - CCNA_00252 0.62 -0.6
265,061 - CCNA_00252 0.65 -0.7
265,145 + CCNA_00252 0.69 -1.2
265,219 + CCNA_00252 0.73 -0.1
265,224 + CCNA_00252 0.73 -0.3
265,255 - CCNA_00252 0.75 +0.1
265,261 + CCNA_00252 0.75 +1.0
265,265 + CCNA_00252 0.75 -0.0
265,265 + CCNA_00252 0.75 +0.6
265,274 - CCNA_00252 0.76 +0.6
265,301 - CCNA_00252 0.77 -0.0
265,314 - CCNA_00252 0.78 -0.6
265,317 + CCNA_00252 0.78 +0.6
265,324 - CCNA_00252 0.78 -0.3
265,364 + CCNA_00252 0.81 -0.2
265,402 + CCNA_00252 0.82 +0.3
265,403 - CCNA_00252 0.83 -0.3
265,410 - CCNA_00252 0.83 -0.3
265,422 - CCNA_00252 0.83 +0.1
265,505 + CCNA_00252 0.88 -0.0
265,532 + CCNA_00252 0.89 -2.2
265,542 - CCNA_00252 0.90 +0.5
265,552 - -0.5
265,558 + -0.1
265,570 + -0.7
265,576 + -0.3
265,579 + -0.2
265,594 - -1.1
265,619 - -0.9
265,641 + -0.6
265,701 - +0.4
265,750 + -0.0
265,764 + -0.4
265,771 + -1.9
265,786 + -0.2
265,792 - +2.0
265,794 - -0.1
265,806 - -0.2
265,895 - -0.5
265,982 + -1.2
265,982 + +0.2
265,982 + +0.8
265,982 + +0.1
265,984 + +0.4
265,984 + +0.6
265,984 + +0.1
265,984 + +0.3
265,984 + -0.0
265,990 - -0.0
265,990 - +1.2
265,990 - +0.3
265,990 - +0.6
265,990 - -1.2
265,992 - +0.1
265,992 - -1.3
265,992 - +1.6
266,009 - -0.4
266,109 + CCNA_00253 0.11 -0.9
266,151 + CCNA_00253 0.15 +0.2
266,158 + CCNA_00253 0.15 -0.3
266,159 - CCNA_00253 0.16 -0.8
266,164 + CCNA_00253 0.16 -1.4
266,173 - CCNA_00253 0.17 -0.3
266,184 + CCNA_00253 0.18 +0.2
266,205 + CCNA_00253 0.20 -0.1
266,226 + CCNA_00253 0.22 +0.7
266,287 - CCNA_00253 0.28 -1.0
266,288 - CCNA_00253 0.28 -0.3
266,289 + CCNA_00253 0.28 -1.6
266,307 - CCNA_00253 0.30 +1.0
266,330 - CCNA_00253 0.32 -0.4
266,349 - CCNA_00253 0.34 -1.2
266,374 + CCNA_00253 0.36 -2.3
266,405 - CCNA_00253 0.39 +0.2
266,430 + CCNA_00253 0.42 -0.4
266,430 + CCNA_00253 0.42 +0.2
266,438 - CCNA_00253 0.43 +0.0
266,438 - CCNA_00253 0.43 -1.3
266,438 - CCNA_00253 0.43 +0.5
266,438 - CCNA_00253 0.43 +0.6
266,438 - CCNA_00253 0.43 -1.4
266,444 - CCNA_00253 0.43 -1.5
266,468 - CCNA_00253 0.46 -0.3
266,482 + CCNA_00253 0.47 -0.6
266,490 + CCNA_00253 0.48 -0.1
266,498 - CCNA_00253 0.48 +1.3
266,498 - CCNA_00253 0.48 -0.3
266,498 - CCNA_00253 0.48 -0.9
266,514 + CCNA_00253 0.50 +0.2
266,514 + CCNA_00253 0.50 +1.0
266,522 - CCNA_00253 0.51 +0.4
266,522 - CCNA_00253 0.51 +0.2
266,522 - CCNA_00253 0.51 +1.2
266,522 - CCNA_00253 0.51 +0.6
266,522 - CCNA_00253 0.51 -0.2
266,522 - CCNA_00253 0.51 +0.4
266,522 - CCNA_00253 0.51 +0.2
266,522 - CCNA_00253 0.51 +0.2
266,533 - CCNA_00253 0.52 +0.6
266,533 - CCNA_00253 0.52 +0.2
266,581 - CCNA_00253 0.57 -1.0
266,637 - CCNA_00253 0.62 +1.0
266,714 - CCNA_00253 0.69 -0.4
266,720 + CCNA_00253 0.70 +2.6

Or see this region's nucleotide sequence