Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00222 and CCNA_00223 are separated by 8 nucleotides CCNA_00223 and CCNA_00224 overlap by 4 nucleotides CCNA_00224 and CCNA_00225 are separated by 330 nucleotides CCNA_00225 and CCNA_00226 are separated by 100 nucleotides CCNA_00226 and CCNA_00227 are separated by 57 nucleotides
CCNA_00222: CCNA_00222 - glucose-6-phosphate isomerase/glucose-6 phosphate 1-epimerase, at 238,241 to 239,860
_00222
CCNA_00223: CCNA_00223 - esterase lipase Family protein, at 239,869 to 240,651
_00223
CCNA_00224: CCNA_00224 - TonB-dependent receptor protein, at 240,648 to 242,693
_00224
CCNA_00225: CCNA_00225 - hypothetical protein, at 243,024 to 243,056
_00225
CCNA_00226: CCNA_00226 - hypothetical protein, at 243,157 to 243,432
_00226
CCNA_00227: CCNA_00227 - methyltransferase, at 243,490 to 244,056
_00227
Position (kb) 240
241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 239.854 kb on + strand at 239.859 kb on + strand at 239.915 kb on - strand at 239.947 kb on + strand at 240.014 kb on - strand, within CCNA_00223 at 240.058 kb on - strand, within CCNA_00223 at 240.060 kb on + strand, within CCNA_00223 at 240.061 kb on + strand, within CCNA_00223 at 240.074 kb on - strand, within CCNA_00223 at 240.082 kb on + strand, within CCNA_00223 at 240.090 kb on - strand, within CCNA_00223 at 240.113 kb on + strand, within CCNA_00223 at 240.134 kb on + strand, within CCNA_00223 at 240.154 kb on + strand, within CCNA_00223 at 240.157 kb on - strand, within CCNA_00223 at 240.162 kb on - strand, within CCNA_00223 at 240.194 kb on - strand, within CCNA_00223 at 240.199 kb on + strand, within CCNA_00223 at 240.199 kb on + strand, within CCNA_00223 at 240.262 kb on + strand, within CCNA_00223 at 240.283 kb on - strand, within CCNA_00223 at 240.299 kb on + strand, within CCNA_00223 at 240.307 kb on - strand, within CCNA_00223 at 240.312 kb on + strand, within CCNA_00223 at 240.312 kb on + strand, within CCNA_00223 at 240.312 kb on + strand, within CCNA_00223 at 240.312 kb on + strand, within CCNA_00223 at 240.312 kb on + strand, within CCNA_00223 at 240.312 kb on + strand, within CCNA_00223 at 240.318 kb on + strand, within CCNA_00223 at 240.318 kb on + strand, within CCNA_00223 at 240.318 kb on + strand, within CCNA_00223 at 240.318 kb on + strand, within CCNA_00223 at 240.318 kb on + strand, within CCNA_00223 at 240.320 kb on - strand, within CCNA_00223 at 240.320 kb on - strand, within CCNA_00223 at 240.326 kb on - strand, within CCNA_00223 at 240.326 kb on - strand, within CCNA_00223 at 240.326 kb on - strand, within CCNA_00223 at 240.326 kb on - strand, within CCNA_00223 at 240.397 kb on + strand, within CCNA_00223 at 240.402 kb on + strand, within CCNA_00223 at 240.407 kb on + strand, within CCNA_00223 at 240.407 kb on + strand, within CCNA_00223 at 240.410 kb on - strand, within CCNA_00223 at 240.410 kb on - strand, within CCNA_00223 at 240.424 kb on + strand, within CCNA_00223 at 240.430 kb on - strand, within CCNA_00223 at 240.431 kb on - strand, within CCNA_00223 at 240.440 kb on + strand, within CCNA_00223 at 240.440 kb on + strand, within CCNA_00223 at 240.456 kb on + strand, within CCNA_00223 at 240.456 kb on + strand, within CCNA_00223 at 240.468 kb on + strand, within CCNA_00223 at 240.468 kb on + strand, within CCNA_00223 at 240.468 kb on + strand, within CCNA_00223 at 240.468 kb on + strand, within CCNA_00223 at 240.498 kb on + strand, within CCNA_00223 at 240.506 kb on - strand, within CCNA_00223 at 240.506 kb on - strand, within CCNA_00223 at 240.511 kb on - strand, within CCNA_00223 at 240.511 kb on - strand, within CCNA_00223 at 240.534 kb on - strand, within CCNA_00223 at 240.539 kb on - strand, within CCNA_00223 at 240.575 kb on + strand at 240.615 kb on + strand at 240.682 kb on - strand at 240.682 kb on - strand at 240.702 kb on + strand at 240.702 kb on + strand at 240.702 kb on + strand at 240.707 kb on + strand at 240.710 kb on - strand at 240.788 kb on - strand at 240.804 kb on + strand at 240.812 kb on - strand at 240.822 kb on - strand at 240.822 kb on - strand at 240.827 kb on - strand at 240.840 kb on + strand at 240.841 kb on - strand at 240.848 kb on - strand at 240.848 kb on - strand at 240.864 kb on + strand, within CCNA_00224 at 240.867 kb on - strand, within CCNA_00224 at 240.872 kb on - strand, within CCNA_00224 at 240.872 kb on - strand, within CCNA_00224 at 240.877 kb on - strand, within CCNA_00224 at 240.925 kb on + strand, within CCNA_00224 at 240.925 kb on + strand, within CCNA_00224 at 240.925 kb on + strand, within CCNA_00224 at 240.933 kb on - strand, within CCNA_00224 at 240.947 kb on + strand, within CCNA_00224 at 240.947 kb on + strand, within CCNA_00224 at 240.958 kb on + strand, within CCNA_00224 at 240.963 kb on + strand, within CCNA_00224 at 240.971 kb on - strand, within CCNA_00224 at 241.014 kb on - strand, within CCNA_00224 at 241.017 kb on + strand, within CCNA_00224 at 241.049 kb on + strand, within CCNA_00224 at 241.050 kb on + strand, within CCNA_00224 at 241.063 kb on + strand, within CCNA_00224 at 241.088 kb on + strand, within CCNA_00224 at 241.121 kb on - strand, within CCNA_00224 at 241.261 kb on + strand, within CCNA_00224 at 241.276 kb on + strand, within CCNA_00224 at 241.327 kb on - strand, within CCNA_00224 at 241.345 kb on + strand, within CCNA_00224 at 241.402 kb on + strand, within CCNA_00224 at 241.428 kb on - strand, within CCNA_00224 at 241.440 kb on - strand, within CCNA_00224 at 241.446 kb on + strand, within CCNA_00224 at 241.462 kb on + strand, within CCNA_00224 at 241.486 kb on + strand, within CCNA_00224 at 241.493 kb on + strand, within CCNA_00224 at 241.510 kb on + strand, within CCNA_00224 at 241.522 kb on + strand, within CCNA_00224 at 241.537 kb on - strand, within CCNA_00224 at 241.540 kb on + strand, within CCNA_00224 at 241.553 kb on - strand, within CCNA_00224 at 241.575 kb on - strand, within CCNA_00224 at 241.593 kb on - strand, within CCNA_00224 at 241.616 kb on - strand, within CCNA_00224 at 241.644 kb on + strand, within CCNA_00224 at 241.644 kb on + strand, within CCNA_00224 at 241.665 kb on + strand, within CCNA_00224 at 241.675 kb on + strand, within CCNA_00224 at 241.681 kb on + strand, within CCNA_00224 at 241.728 kb on + strand, within CCNA_00224 at 241.744 kb on + strand, within CCNA_00224 at 241.757 kb on + strand, within CCNA_00224 at 241.762 kb on + strand, within CCNA_00224 at 241.771 kb on - strand, within CCNA_00224 at 241.826 kb on - strand, within CCNA_00224 at 241.843 kb on + strand, within CCNA_00224 at 241.843 kb on + strand, within CCNA_00224 at 241.866 kb on + strand, within CCNA_00224 at 241.866 kb on + strand, within CCNA_00224 at 241.866 kb on + strand, within CCNA_00224 at 241.867 kb on + strand, within CCNA_00224 at 241.867 kb on + strand, within CCNA_00224 at 241.874 kb on - strand, within CCNA_00224 at 241.875 kb on - strand, within CCNA_00224 at 241.957 kb on + strand, within CCNA_00224 at 242.025 kb on - strand, within CCNA_00224 at 242.092 kb on + strand, within CCNA_00224 at 242.095 kb on - strand, within CCNA_00224 at 242.122 kb on + strand, within CCNA_00224 at 242.130 kb on - strand, within CCNA_00224 at 242.172 kb on - strand, within CCNA_00224 at 242.216 kb on + strand, within CCNA_00224 at 242.216 kb on + strand, within CCNA_00224 at 242.216 kb on + strand, within CCNA_00224 at 242.224 kb on - strand, within CCNA_00224 at 242.224 kb on - strand, within CCNA_00224 at 242.229 kb on + strand, within CCNA_00224 at 242.285 kb on + strand, within CCNA_00224 at 242.285 kb on - strand, within CCNA_00224 at 242.299 kb on - strand, within CCNA_00224 at 242.299 kb on - strand, within CCNA_00224 at 242.343 kb on + strand, within CCNA_00224 at 242.365 kb on + strand, within CCNA_00224 at 242.390 kb on - strand, within CCNA_00224 at 242.409 kb on + strand, within CCNA_00224 at 242.428 kb on - strand, within CCNA_00224 at 242.438 kb on + strand, within CCNA_00224 at 242.445 kb on + strand, within CCNA_00224 at 242.473 kb on - strand, within CCNA_00224 at 242.481 kb on + strand, within CCNA_00224 at 242.489 kb on - strand at 242.489 kb on - strand at 242.489 kb on - strand at 242.527 kb on + strand at 242.527 kb on + strand at 242.527 kb on + strand at 242.535 kb on - strand at 242.535 kb on - strand at 242.535 kb on - strand at 242.585 kb on - strand at 242.587 kb on + strand at 242.643 kb on + strand at 242.643 kb on + strand at 242.667 kb on + strand at 242.687 kb on - strand at 242.699 kb on + strand at 242.701 kb on + strand at 242.709 kb on - strand at 242.715 kb on + strand at 242.715 kb on + strand at 242.715 kb on + strand at 242.715 kb on + strand at 242.892 kb on + strand at 242.894 kb on + strand at 242.900 kb on - strand at 242.900 kb on - strand at 242.900 kb on - strand at 242.900 kb on - strand at 242.900 kb on - strand at 242.900 kb on - strand at 242.900 kb on - strand at 242.900 kb on - strand at 242.900 kb on - strand at 242.900 kb on - strand at 242.900 kb on - strand at 242.942 kb on + strand at 242.965 kb on + strand at 242.971 kb on + strand at 242.973 kb on - strand at 243.010 kb on - strand at 243.015 kb on - strand at 243.051 kb on + strand, within CCNA_00225 at 243.057 kb on - strand at 243.083 kb on + strand at 243.091 kb on - strand at 243.116 kb on + strand at 243.154 kb on + strand at 243.162 kb on - strand at 243.162 kb on - strand at 243.172 kb on - strand at 243.177 kb on + strand at 243.198 kb on + strand, within CCNA_00226 at 243.198 kb on + strand, within CCNA_00226 at 243.198 kb on + strand, within CCNA_00226 at 243.206 kb on - strand, within CCNA_00226 at 243.206 kb on - strand, within CCNA_00226 at 243.213 kb on + strand, within CCNA_00226 at 243.275 kb on + strand, within CCNA_00226 at 243.288 kb on - strand, within CCNA_00226 at 243.304 kb on + strand, within CCNA_00226 at 243.305 kb on + strand, within CCNA_00226 at 243.324 kb on + strand, within CCNA_00226 at 243.379 kb on - strand, within CCNA_00226 at 243.408 kb on - strand at 243.449 kb on + strand at 243.460 kb on - strand at 243.462 kb on + strand at 243.495 kb on - strand at 243.544 kb on + strand at 243.644 kb on + strand, within CCNA_00227 at 243.658 kb on + strand, within CCNA_00227
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 239,854 + -0.0 239,859 + -0.1 239,915 - +0.6 239,947 + -0.5 240,014 - CCNA_00223 0.19 -0.1 240,058 - CCNA_00223 0.24 +0.2 240,060 + CCNA_00223 0.24 +0.3 240,061 + CCNA_00223 0.25 +0.5 240,074 - CCNA_00223 0.26 +0.4 240,082 + CCNA_00223 0.27 -0.2 240,090 - CCNA_00223 0.28 +1.0 240,113 + CCNA_00223 0.31 +0.2 240,134 + CCNA_00223 0.34 -0.5 240,154 + CCNA_00223 0.36 +0.6 240,157 - CCNA_00223 0.37 -0.6 240,162 - CCNA_00223 0.37 -0.1 240,194 - CCNA_00223 0.42 -0.1 240,199 + CCNA_00223 0.42 -0.3 240,199 + CCNA_00223 0.42 +0.7 240,262 + CCNA_00223 0.50 +0.2 240,283 - CCNA_00223 0.53 +0.3 240,299 + CCNA_00223 0.55 -1.9 240,307 - CCNA_00223 0.56 -0.4 240,312 + CCNA_00223 0.57 +0.5 240,312 + CCNA_00223 0.57 -0.2 240,312 + CCNA_00223 0.57 +0.1 240,312 + CCNA_00223 0.57 -0.6 240,312 + CCNA_00223 0.57 +0.7 240,312 + CCNA_00223 0.57 -0.0 240,318 + CCNA_00223 0.57 +0.4 240,318 + CCNA_00223 0.57 -0.3 240,318 + CCNA_00223 0.57 +0.3 240,318 + CCNA_00223 0.57 -0.0 240,318 + CCNA_00223 0.57 -0.9 240,320 - CCNA_00223 0.58 -0.8 240,320 - CCNA_00223 0.58 -0.2 240,326 - CCNA_00223 0.58 +0.5 240,326 - CCNA_00223 0.58 -0.6 240,326 - CCNA_00223 0.58 -1.1 240,326 - CCNA_00223 0.58 -2.2 240,397 + CCNA_00223 0.67 -0.1 240,402 + CCNA_00223 0.68 -0.3 240,407 + CCNA_00223 0.69 +0.2 240,407 + CCNA_00223 0.69 +0.9 240,410 - CCNA_00223 0.69 -0.3 240,410 - CCNA_00223 0.69 -1.0 240,424 + CCNA_00223 0.71 +0.5 240,430 - CCNA_00223 0.72 -2.4 240,431 - CCNA_00223 0.72 -0.2 240,440 + CCNA_00223 0.73 -0.0 240,440 + CCNA_00223 0.73 +0.9 240,456 + CCNA_00223 0.75 -0.0 240,456 + CCNA_00223 0.75 -0.1 240,468 + CCNA_00223 0.77 +0.2 240,468 + CCNA_00223 0.77 +0.4 240,468 + CCNA_00223 0.77 +0.5 240,468 + CCNA_00223 0.77 +0.1 240,498 + CCNA_00223 0.80 +0.8 240,506 - CCNA_00223 0.81 +0.1 240,506 - CCNA_00223 0.81 -0.1 240,511 - CCNA_00223 0.82 -0.9 240,511 - CCNA_00223 0.82 -0.4 240,534 - CCNA_00223 0.85 -0.4 240,539 - CCNA_00223 0.86 +1.0 240,575 + -0.1 240,615 + -0.3 240,682 - -0.6 240,682 - -1.2 240,702 + -0.5 240,702 + +1.1 240,702 + -0.2 240,707 + -0.0 240,710 - -0.9 240,788 - +0.0 240,804 + +0.1 240,812 - -0.1 240,822 - -0.2 240,822 - -0.4 240,827 - -0.1 240,840 + +0.1 240,841 - +0.4 240,848 - +0.0 240,848 - +0.4 240,864 + CCNA_00224 0.11 -1.0 240,867 - CCNA_00224 0.11 -0.1 240,872 - CCNA_00224 0.11 -0.0 240,872 - CCNA_00224 0.11 +0.4 240,877 - CCNA_00224 0.11 +0.2 240,925 + CCNA_00224 0.14 +0.2 240,925 + CCNA_00224 0.14 -0.2 240,925 + CCNA_00224 0.14 -0.0 240,933 - CCNA_00224 0.14 -0.1 240,947 + CCNA_00224 0.15 +0.4 240,947 + CCNA_00224 0.15 -0.3 240,958 + CCNA_00224 0.15 -0.1 240,963 + CCNA_00224 0.15 -0.4 240,971 - CCNA_00224 0.16 +0.6 241,014 - CCNA_00224 0.18 -0.4 241,017 + CCNA_00224 0.18 +0.1 241,049 + CCNA_00224 0.20 +0.3 241,050 + CCNA_00224 0.20 -0.0 241,063 + CCNA_00224 0.20 -0.6 241,088 + CCNA_00224 0.22 -1.6 241,121 - CCNA_00224 0.23 -0.9 241,261 + CCNA_00224 0.30 -0.1 241,276 + CCNA_00224 0.31 -0.9 241,327 - CCNA_00224 0.33 +0.3 241,345 + CCNA_00224 0.34 +1.6 241,402 + CCNA_00224 0.37 -2.0 241,428 - CCNA_00224 0.38 -0.0 241,440 - CCNA_00224 0.39 -0.3 241,446 + CCNA_00224 0.39 -0.2 241,462 + CCNA_00224 0.40 -0.1 241,486 + CCNA_00224 0.41 +0.4 241,493 + CCNA_00224 0.41 +0.3 241,510 + CCNA_00224 0.42 -2.1 241,522 + CCNA_00224 0.43 +0.3 241,537 - CCNA_00224 0.43 -2.1 241,540 + CCNA_00224 0.44 -0.2 241,553 - CCNA_00224 0.44 +0.1 241,575 - CCNA_00224 0.45 +0.4 241,593 - CCNA_00224 0.46 +0.8 241,616 - CCNA_00224 0.47 +1.3 241,644 + CCNA_00224 0.49 -0.9 241,644 + CCNA_00224 0.49 +0.5 241,665 + CCNA_00224 0.50 -1.4 241,675 + CCNA_00224 0.50 +0.7 241,681 + CCNA_00224 0.50 -0.2 241,728 + CCNA_00224 0.53 +0.3 241,744 + CCNA_00224 0.54 -1.1 241,757 + CCNA_00224 0.54 +0.1 241,762 + CCNA_00224 0.54 +0.4 241,771 - CCNA_00224 0.55 -1.0 241,826 - CCNA_00224 0.58 -1.3 241,843 + CCNA_00224 0.58 +0.2 241,843 + CCNA_00224 0.58 +0.5 241,866 + CCNA_00224 0.60 +0.6 241,866 + CCNA_00224 0.60 -0.7 241,866 + CCNA_00224 0.60 +0.3 241,867 + CCNA_00224 0.60 -1.5 241,867 + CCNA_00224 0.60 +0.3 241,874 - CCNA_00224 0.60 +1.2 241,875 - CCNA_00224 0.60 +0.2 241,957 + CCNA_00224 0.64 -0.8 242,025 - CCNA_00224 0.67 -1.4 242,092 + CCNA_00224 0.71 -0.1 242,095 - CCNA_00224 0.71 +2.3 242,122 + CCNA_00224 0.72 -1.4 242,130 - CCNA_00224 0.72 +0.4 242,172 - CCNA_00224 0.74 +1.2 242,216 + CCNA_00224 0.77 +0.9 242,216 + CCNA_00224 0.77 -0.8 242,216 + CCNA_00224 0.77 +0.6 242,224 - CCNA_00224 0.77 +1.0 242,224 - CCNA_00224 0.77 -0.3 242,229 + CCNA_00224 0.77 -1.4 242,285 + CCNA_00224 0.80 +0.1 242,285 - CCNA_00224 0.80 +0.4 242,299 - CCNA_00224 0.81 -0.3 242,299 - CCNA_00224 0.81 +0.2 242,343 + CCNA_00224 0.83 -0.9 242,365 + CCNA_00224 0.84 +0.3 242,390 - CCNA_00224 0.85 +0.8 242,409 + CCNA_00224 0.86 +1.3 242,428 - CCNA_00224 0.87 -0.6 242,438 + CCNA_00224 0.87 +1.0 242,445 + CCNA_00224 0.88 -0.6 242,473 - CCNA_00224 0.89 +1.5 242,481 + CCNA_00224 0.90 -0.3 242,489 - +1.4 242,489 - -0.3 242,489 - +0.0 242,527 + -0.1 242,527 + -0.2 242,527 + -0.4 242,535 - -1.9 242,535 - -0.5 242,535 - -1.3 242,585 - +0.0 242,587 + -0.2 242,643 + -1.3 242,643 + -1.5 242,667 + -0.5 242,687 - -0.6 242,699 + -0.4 242,701 + +0.8 242,709 - -0.8 242,715 + -0.2 242,715 + -2.5 242,715 + +1.1 242,715 + -0.5 242,892 + -0.8 242,894 + -0.2 242,900 - -0.1 242,900 - +0.2 242,900 - -0.1 242,900 - -0.2 242,900 - +0.7 242,900 - -1.9 242,900 - +0.0 242,900 - -0.3 242,900 - -0.2 242,900 - -0.2 242,900 - -0.8 242,942 + -1.7 242,965 + -0.4 242,971 + +0.7 242,973 - +0.1 243,010 - -0.0 243,015 - -0.2 243,051 + CCNA_00225 0.82 +0.7 243,057 - +0.3 243,083 + -0.4 243,091 - +2.4 243,116 + -1.4 243,154 + +0.1 243,162 - +0.4 243,162 - +0.6 243,172 - -0.1 243,177 + +0.0 243,198 + CCNA_00226 0.15 +0.0 243,198 + CCNA_00226 0.15 -0.2 243,198 + CCNA_00226 0.15 +0.0 243,206 - CCNA_00226 0.18 -0.7 243,206 - CCNA_00226 0.18 +0.1 243,213 + CCNA_00226 0.20 +0.5 243,275 + CCNA_00226 0.43 +1.1 243,288 - CCNA_00226 0.47 -0.2 243,304 + CCNA_00226 0.53 -0.3 243,305 + CCNA_00226 0.54 -0.0 243,324 + CCNA_00226 0.61 +0.0 243,379 - CCNA_00226 0.80 +0.5 243,408 - +0.1 243,449 + -0.8 243,460 - -0.3 243,462 + +0.4 243,495 - -0.1 243,544 + -1.6 243,644 + CCNA_00227 0.27 -0.1 243,658 + CCNA_00227 0.30 -3.5
Or see this region's nucleotide sequence