Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00194 and CCNA_00195 are separated by 141 nucleotides CCNA_00195 and CCNA_00196 overlap by 4 nucleotides CCNA_00196 and CCNA_00197 are separated by 589 nucleotides CCNA_00197 and CCNA_00198 overlap by 4 nucleotides
CCNA_00194: CCNA_00194 - Antibiotic biosynthesis monooxygenase family protein, at 208,043 to 208,345
_00194
CCNA_00195: CCNA_00195 - 3-isopropylmalate dehydratase small subunit, at 208,487 to 209,095
_00195
CCNA_00196: CCNA_00196 - 3-isopropylmalate dehydratase large subunit, at 209,092 to 210,531
_00196
CCNA_00197: CCNA_00197 - LSU ribosomal protein L19P, at 211,121 to 211,522
_00197
CCNA_00198: CCNA_00198 - tRNA (guanine-N1) -methyltransferase, at 211,519 to 212,256
_00198
Position (kb) 209
210
211 Strain fitness (log2 ratio) -2
-1
0
1
2 at 208.098 kb on - strand, within CCNA_00194 at 208.098 kb on - strand, within CCNA_00194 at 208.105 kb on - strand, within CCNA_00194 at 208.188 kb on + strand, within CCNA_00194 at 208.196 kb on - strand, within CCNA_00194 at 208.226 kb on + strand, within CCNA_00194 at 208.227 kb on + strand, within CCNA_00194 at 208.231 kb on + strand, within CCNA_00194 at 208.234 kb on - strand, within CCNA_00194 at 208.234 kb on - strand, within CCNA_00194 at 208.260 kb on + strand, within CCNA_00194 at 208.260 kb on + strand, within CCNA_00194 at 208.260 kb on + strand, within CCNA_00194 at 208.260 kb on + strand, within CCNA_00194 at 208.260 kb on + strand, within CCNA_00194 at 208.268 kb on - strand, within CCNA_00194 at 208.268 kb on - strand, within CCNA_00194 at 208.268 kb on - strand, within CCNA_00194 at 208.268 kb on - strand, within CCNA_00194 at 208.348 kb on - strand at 208.348 kb on - strand at 208.397 kb on + strand at 208.404 kb on + strand at 208.412 kb on - strand at 208.420 kb on + strand at 208.422 kb on + strand at 208.439 kb on - strand at 208.505 kb on - strand at 208.534 kb on + strand at 208.534 kb on + strand at 208.573 kb on + strand, within CCNA_00195 at 208.634 kb on + strand, within CCNA_00195 at 208.661 kb on - strand, within CCNA_00195 at 208.666 kb on + strand, within CCNA_00195 at 208.684 kb on - strand, within CCNA_00195 at 208.700 kb on - strand, within CCNA_00195 at 208.704 kb on + strand, within CCNA_00195 at 208.712 kb on - strand, within CCNA_00195 at 208.714 kb on + strand, within CCNA_00195 at 208.723 kb on + strand, within CCNA_00195 at 208.731 kb on - strand, within CCNA_00195 at 208.741 kb on - strand, within CCNA_00195 at 208.765 kb on - strand, within CCNA_00195 at 208.772 kb on + strand, within CCNA_00195 at 208.818 kb on + strand, within CCNA_00195 at 208.870 kb on - strand, within CCNA_00195 at 208.888 kb on + strand, within CCNA_00195 at 208.896 kb on + strand, within CCNA_00195 at 208.898 kb on + strand, within CCNA_00195 at 208.898 kb on + strand, within CCNA_00195 at 208.898 kb on + strand, within CCNA_00195 at 208.904 kb on - strand, within CCNA_00195 at 208.906 kb on - strand, within CCNA_00195 at 208.906 kb on - strand, within CCNA_00195 at 208.906 kb on - strand, within CCNA_00195 at 208.906 kb on - strand, within CCNA_00195 at 208.906 kb on - strand, within CCNA_00195 at 208.918 kb on + strand, within CCNA_00195 at 208.979 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.009 kb on - strand, within CCNA_00195 at 209.009 kb on - strand, within CCNA_00195 at 209.009 kb on - strand, within CCNA_00195 at 209.014 kb on + strand, within CCNA_00195 at 209.014 kb on + strand, within CCNA_00195 at 209.022 kb on - strand, within CCNA_00195 at 209.022 kb on - strand, within CCNA_00195 at 209.022 kb on - strand, within CCNA_00195 at 209.022 kb on - strand, within CCNA_00195 at 209.022 kb on - strand, within CCNA_00195 at 209.024 kb on + strand, within CCNA_00195 at 209.024 kb on + strand, within CCNA_00195 at 209.032 kb on - strand, within CCNA_00195 at 209.032 kb on - strand, within CCNA_00195 at 209.048 kb on - strand at 209.089 kb on - strand at 209.179 kb on - strand at 209.332 kb on + strand, within CCNA_00196 at 209.367 kb on + strand, within CCNA_00196 at 209.367 kb on + strand, within CCNA_00196 at 209.368 kb on + strand, within CCNA_00196 at 209.368 kb on + strand, within CCNA_00196 at 209.382 kb on - strand, within CCNA_00196 at 209.384 kb on + strand, within CCNA_00196 at 209.384 kb on + strand, within CCNA_00196 at 209.390 kb on + strand, within CCNA_00196 at 209.390 kb on + strand, within CCNA_00196 at 209.392 kb on - strand, within CCNA_00196 at 209.392 kb on - strand, within CCNA_00196 at 209.397 kb on + strand, within CCNA_00196 at 209.398 kb on - strand, within CCNA_00196 at 209.398 kb on - strand, within CCNA_00196 at 209.484 kb on - strand, within CCNA_00196 at 209.549 kb on - strand, within CCNA_00196 at 209.558 kb on - strand, within CCNA_00196 at 209.560 kb on + strand, within CCNA_00196 at 209.560 kb on + strand, within CCNA_00196 at 209.578 kb on + strand, within CCNA_00196 at 209.578 kb on + strand, within CCNA_00196 at 209.589 kb on + strand, within CCNA_00196 at 209.694 kb on - strand, within CCNA_00196 at 209.709 kb on - strand, within CCNA_00196 at 209.709 kb on - strand, within CCNA_00196 at 209.751 kb on - strand, within CCNA_00196 at 209.755 kb on + strand, within CCNA_00196 at 209.763 kb on - strand, within CCNA_00196 at 209.763 kb on - strand, within CCNA_00196 at 209.776 kb on - strand, within CCNA_00196 at 209.788 kb on + strand, within CCNA_00196 at 209.788 kb on + strand, within CCNA_00196 at 209.793 kb on + strand, within CCNA_00196 at 209.801 kb on - strand, within CCNA_00196 at 209.801 kb on - strand, within CCNA_00196 at 209.801 kb on - strand, within CCNA_00196 at 209.814 kb on - strand, within CCNA_00196 at 209.820 kb on - strand, within CCNA_00196 at 209.841 kb on - strand, within CCNA_00196 at 209.845 kb on + strand, within CCNA_00196 at 209.858 kb on + strand, within CCNA_00196 at 209.859 kb on + strand, within CCNA_00196 at 209.866 kb on - strand, within CCNA_00196 at 209.868 kb on + strand, within CCNA_00196 at 209.868 kb on - strand, within CCNA_00196 at 209.876 kb on - strand, within CCNA_00196 at 209.900 kb on - strand, within CCNA_00196 at 210.003 kb on + strand, within CCNA_00196 at 210.029 kb on + strand, within CCNA_00196 at 210.029 kb on + strand, within CCNA_00196 at 210.040 kb on + strand, within CCNA_00196 at 210.051 kb on + strand, within CCNA_00196 at 210.051 kb on + strand, within CCNA_00196 at 210.051 kb on + strand, within CCNA_00196 at 210.052 kb on + strand, within CCNA_00196 at 210.059 kb on - strand, within CCNA_00196 at 210.059 kb on - strand, within CCNA_00196 at 210.059 kb on - strand, within CCNA_00196 at 210.059 kb on - strand, within CCNA_00196 at 210.062 kb on + strand, within CCNA_00196 at 210.062 kb on + strand, within CCNA_00196 at 210.100 kb on + strand, within CCNA_00196 at 210.123 kb on + strand, within CCNA_00196 at 210.125 kb on + strand, within CCNA_00196 at 210.162 kb on - strand, within CCNA_00196 at 210.175 kb on + strand, within CCNA_00196 at 210.180 kb on + strand, within CCNA_00196 at 210.180 kb on + strand, within CCNA_00196 at 210.180 kb on + strand, within CCNA_00196 at 210.193 kb on - strand, within CCNA_00196 at 210.214 kb on - strand, within CCNA_00196 at 210.318 kb on + strand, within CCNA_00196 at 210.319 kb on + strand, within CCNA_00196 at 210.322 kb on - strand, within CCNA_00196 at 210.327 kb on - strand, within CCNA_00196 at 210.358 kb on - strand, within CCNA_00196 at 210.369 kb on - strand, within CCNA_00196 at 210.374 kb on - strand, within CCNA_00196 at 210.381 kb on + strand, within CCNA_00196 at 210.381 kb on + strand, within CCNA_00196 at 210.412 kb on + strand at 210.414 kb on + strand at 210.420 kb on - strand at 210.429 kb on + strand at 210.437 kb on - strand at 210.442 kb on + strand at 210.455 kb on - strand at 210.460 kb on - strand at 210.505 kb on - strand at 210.505 kb on - strand at 210.505 kb on - strand at 210.640 kb on - strand at 210.662 kb on - strand at 210.709 kb on + strand at 210.717 kb on - strand at 210.717 kb on - strand at 210.748 kb on - strand at 210.838 kb on + strand at 210.849 kb on + strand at 210.854 kb on + strand at 210.859 kb on + strand at 210.867 kb on - strand at 210.867 kb on - strand at 210.867 kb on - strand at 210.867 kb on - strand at 210.912 kb on + strand at 210.912 kb on + strand at 210.913 kb on + strand at 210.973 kb on + strand at 210.981 kb on - strand at 211.001 kb on + strand at 211.002 kb on + strand at 211.031 kb on + strand at 211.089 kb on - strand at 211.118 kb on + strand at 211.118 kb on + strand at 211.119 kb on - strand at 211.126 kb on - strand at 211.191 kb on - strand, within CCNA_00197 at 211.211 kb on - strand, within CCNA_00197
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 208,098 - CCNA_00194 0.18 -0.3 208,098 - CCNA_00194 0.18 +2.3 208,105 - CCNA_00194 0.20 +0.4 208,188 + CCNA_00194 0.48 +0.1 208,196 - CCNA_00194 0.50 +0.4 208,226 + CCNA_00194 0.60 -0.1 208,227 + CCNA_00194 0.61 -0.8 208,231 + CCNA_00194 0.62 +0.4 208,234 - CCNA_00194 0.63 -0.0 208,234 - CCNA_00194 0.63 -0.7 208,260 + CCNA_00194 0.72 -0.1 208,260 + CCNA_00194 0.72 -0.3 208,260 + CCNA_00194 0.72 +0.3 208,260 + CCNA_00194 0.72 +0.9 208,260 + CCNA_00194 0.72 -0.1 208,268 - CCNA_00194 0.74 +0.3 208,268 - CCNA_00194 0.74 +0.4 208,268 - CCNA_00194 0.74 -0.3 208,268 - CCNA_00194 0.74 -0.1 208,348 - -1.1 208,348 - +0.3 208,397 + +0.1 208,404 + -0.0 208,412 - -1.8 208,420 + +0.6 208,422 + -0.8 208,439 - -0.0 208,505 - +0.3 208,534 + +1.6 208,534 + +0.6 208,573 + CCNA_00195 0.14 -1.0 208,634 + CCNA_00195 0.24 +0.6 208,661 - CCNA_00195 0.29 -0.1 208,666 + CCNA_00195 0.29 +0.4 208,684 - CCNA_00195 0.32 +0.9 208,700 - CCNA_00195 0.35 +0.0 208,704 + CCNA_00195 0.36 +0.9 208,712 - CCNA_00195 0.37 -1.9 208,714 + CCNA_00195 0.37 -1.4 208,723 + CCNA_00195 0.39 -0.7 208,731 - CCNA_00195 0.40 +0.7 208,741 - CCNA_00195 0.42 -0.5 208,765 - CCNA_00195 0.46 +0.1 208,772 + CCNA_00195 0.47 -0.3 208,818 + CCNA_00195 0.54 -0.2 208,870 - CCNA_00195 0.63 +0.1 208,888 + CCNA_00195 0.66 +1.4 208,896 + CCNA_00195 0.67 -0.3 208,898 + CCNA_00195 0.67 -0.1 208,898 + CCNA_00195 0.67 +0.3 208,898 + CCNA_00195 0.67 +0.0 208,904 - CCNA_00195 0.68 -0.8 208,906 - CCNA_00195 0.69 -0.0 208,906 - CCNA_00195 0.69 +0.5 208,906 - CCNA_00195 0.69 +0.3 208,906 - CCNA_00195 0.69 +1.7 208,906 - CCNA_00195 0.69 -0.0 208,918 + CCNA_00195 0.71 +0.3 208,979 + CCNA_00195 0.81 -1.8 209,001 + CCNA_00195 0.84 -0.0 209,001 + CCNA_00195 0.84 -0.3 209,001 + CCNA_00195 0.84 -0.6 209,001 + CCNA_00195 0.84 -0.2 209,001 + CCNA_00195 0.84 +0.8 209,001 + CCNA_00195 0.84 -0.1 209,001 + CCNA_00195 0.84 +0.0 209,001 + CCNA_00195 0.84 -0.1 209,009 - CCNA_00195 0.86 -0.8 209,009 - CCNA_00195 0.86 -0.5 209,009 - CCNA_00195 0.86 +0.1 209,014 + CCNA_00195 0.87 +0.4 209,014 + CCNA_00195 0.87 +0.5 209,022 - CCNA_00195 0.88 -0.7 209,022 - CCNA_00195 0.88 -1.0 209,022 - CCNA_00195 0.88 -1.1 209,022 - CCNA_00195 0.88 -0.6 209,022 - CCNA_00195 0.88 -0.1 209,024 + CCNA_00195 0.88 +1.2 209,024 + CCNA_00195 0.88 +0.4 209,032 - CCNA_00195 0.89 +0.0 209,032 - CCNA_00195 0.89 +0.2 209,048 - +1.2 209,089 - +1.3 209,179 - +0.6 209,332 + CCNA_00196 0.17 -2.1 209,367 + CCNA_00196 0.19 +0.9 209,367 + CCNA_00196 0.19 -2.3 209,368 + CCNA_00196 0.19 +0.1 209,368 + CCNA_00196 0.19 +0.0 209,382 - CCNA_00196 0.20 -1.6 209,384 + CCNA_00196 0.20 -0.5 209,384 + CCNA_00196 0.20 -0.5 209,390 + CCNA_00196 0.21 -0.3 209,390 + CCNA_00196 0.21 -0.2 209,392 - CCNA_00196 0.21 +0.3 209,392 - CCNA_00196 0.21 +0.0 209,397 + CCNA_00196 0.21 +0.5 209,398 - CCNA_00196 0.21 -0.4 209,398 - CCNA_00196 0.21 +0.6 209,484 - CCNA_00196 0.27 -0.4 209,549 - CCNA_00196 0.32 +0.9 209,558 - CCNA_00196 0.32 -1.3 209,560 + CCNA_00196 0.33 -0.6 209,560 + CCNA_00196 0.33 -1.2 209,578 + CCNA_00196 0.34 -0.9 209,578 + CCNA_00196 0.34 -1.0 209,589 + CCNA_00196 0.35 -1.4 209,694 - CCNA_00196 0.42 -0.6 209,709 - CCNA_00196 0.43 +1.1 209,709 - CCNA_00196 0.43 +0.1 209,751 - CCNA_00196 0.46 +0.8 209,755 + CCNA_00196 0.46 -0.6 209,763 - CCNA_00196 0.47 -1.8 209,763 - CCNA_00196 0.47 -0.2 209,776 - CCNA_00196 0.47 -1.7 209,788 + CCNA_00196 0.48 +0.0 209,788 + CCNA_00196 0.48 +0.0 209,793 + CCNA_00196 0.49 -0.6 209,801 - CCNA_00196 0.49 +0.9 209,801 - CCNA_00196 0.49 -0.1 209,801 - CCNA_00196 0.49 -0.5 209,814 - CCNA_00196 0.50 +0.3 209,820 - CCNA_00196 0.51 -0.3 209,841 - CCNA_00196 0.52 -2.7 209,845 + CCNA_00196 0.52 +0.2 209,858 + CCNA_00196 0.53 -1.8 209,859 + CCNA_00196 0.53 -0.4 209,866 - CCNA_00196 0.54 +0.8 209,868 + CCNA_00196 0.54 +0.3 209,868 - CCNA_00196 0.54 +0.4 209,876 - CCNA_00196 0.54 -0.8 209,900 - CCNA_00196 0.56 +0.0 210,003 + CCNA_00196 0.63 -0.5 210,029 + CCNA_00196 0.65 -0.1 210,029 + CCNA_00196 0.65 -0.0 210,040 + CCNA_00196 0.66 -0.1 210,051 + CCNA_00196 0.67 +0.0 210,051 + CCNA_00196 0.67 +0.9 210,051 + CCNA_00196 0.67 +0.1 210,052 + CCNA_00196 0.67 -1.8 210,059 - CCNA_00196 0.67 -1.5 210,059 - CCNA_00196 0.67 +0.4 210,059 - CCNA_00196 0.67 +0.7 210,059 - CCNA_00196 0.67 +0.0 210,062 + CCNA_00196 0.67 -0.2 210,062 + CCNA_00196 0.67 +0.3 210,100 + CCNA_00196 0.70 -1.9 210,123 + CCNA_00196 0.72 -0.3 210,125 + CCNA_00196 0.72 +1.1 210,162 - CCNA_00196 0.74 +0.1 210,175 + CCNA_00196 0.75 -1.2 210,180 + CCNA_00196 0.76 -0.0 210,180 + CCNA_00196 0.76 -0.9 210,180 + CCNA_00196 0.76 -0.3 210,193 - CCNA_00196 0.76 +0.1 210,214 - CCNA_00196 0.78 -0.3 210,318 + CCNA_00196 0.85 -0.3 210,319 + CCNA_00196 0.85 +0.0 210,322 - CCNA_00196 0.85 -0.1 210,327 - CCNA_00196 0.86 +0.7 210,358 - CCNA_00196 0.88 +0.5 210,369 - CCNA_00196 0.89 -1.1 210,374 - CCNA_00196 0.89 +0.8 210,381 + CCNA_00196 0.90 -0.3 210,381 + CCNA_00196 0.90 -0.2 210,412 + -0.9 210,414 + -1.2 210,420 - -0.2 210,429 + +0.1 210,437 - +0.1 210,442 + -2.5 210,455 - -1.6 210,460 - -1.3 210,505 - -0.3 210,505 - -0.2 210,505 - +0.3 210,640 - -0.6 210,662 - +1.5 210,709 + -0.7 210,717 - +0.2 210,717 - +0.1 210,748 - +0.0 210,838 + +0.3 210,849 + -0.2 210,854 + -0.2 210,859 + -0.1 210,867 - +1.4 210,867 - +0.0 210,867 - +0.3 210,867 - -0.7 210,912 + +0.2 210,912 + -0.1 210,913 + -0.3 210,973 + +0.0 210,981 - +0.5 211,001 + +0.0 211,002 + +0.3 211,031 + +0.5 211,089 - +0.5 211,118 + +0.2 211,118 + +0.3 211,119 - +0.6 211,126 - -0.4 211,191 - CCNA_00197 0.17 -2.1 211,211 - CCNA_00197 0.22 -1.5
Or see this region's nucleotide sequence