Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00160

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00159 and CCNA_00160 are separated by 140 nucleotidesCCNA_00160 and CCNA_00161 are separated by 424 nucleotides CCNA_00159: CCNA_00159 - DNA gyrase subunit B, at 166,781 to 169,246 _00159 CCNA_00160: CCNA_00160 - methyl-accepting chemotaxis protein, at 169,387 to 170,526 _00160 CCNA_00161: CCNA_00161 - hypothetical protein, at 170,951 to 171,577 _00161 Position (kb) 169 170 171Strain fitness (log2 ratio) -2 -1 0 1 2at 169.259 kb on - strandat 169.302 kb on + strandat 169.315 kb on - strandat 169.315 kb on - strandat 169.315 kb on - strandat 169.374 kb on - strandat 169.433 kb on - strandat 169.452 kb on + strandat 169.452 kb on + strandat 169.462 kb on - strandat 169.462 kb on - strandat 169.464 kb on + strandat 169.472 kb on - strandat 169.498 kb on - strandat 169.512 kb on + strand, within CCNA_00160at 169.535 kb on - strand, within CCNA_00160at 169.564 kb on + strand, within CCNA_00160at 169.605 kb on + strand, within CCNA_00160at 169.618 kb on + strand, within CCNA_00160at 169.632 kb on - strand, within CCNA_00160at 169.647 kb on + strand, within CCNA_00160at 169.656 kb on + strand, within CCNA_00160at 169.668 kb on + strand, within CCNA_00160at 169.673 kb on + strand, within CCNA_00160at 169.697 kb on + strand, within CCNA_00160at 169.714 kb on - strand, within CCNA_00160at 169.714 kb on - strand, within CCNA_00160at 169.763 kb on + strand, within CCNA_00160at 169.771 kb on - strand, within CCNA_00160at 169.771 kb on - strand, within CCNA_00160at 169.780 kb on - strand, within CCNA_00160at 169.786 kb on - strand, within CCNA_00160at 169.816 kb on - strand, within CCNA_00160at 169.827 kb on + strand, within CCNA_00160at 169.827 kb on + strand, within CCNA_00160at 169.830 kb on - strand, within CCNA_00160at 169.837 kb on - strand, within CCNA_00160at 169.854 kb on + strand, within CCNA_00160at 169.869 kb on + strand, within CCNA_00160at 169.872 kb on - strand, within CCNA_00160at 169.872 kb on - strand, within CCNA_00160at 169.874 kb on + strand, within CCNA_00160at 169.874 kb on + strand, within CCNA_00160at 169.877 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.884 kb on + strand, within CCNA_00160at 169.922 kb on + strand, within CCNA_00160at 169.922 kb on + strand, within CCNA_00160at 169.922 kb on + strand, within CCNA_00160at 169.922 kb on + strand, within CCNA_00160at 169.923 kb on + strand, within CCNA_00160at 169.931 kb on - strand, within CCNA_00160at 169.949 kb on - strand, within CCNA_00160at 169.955 kb on + strand, within CCNA_00160at 169.963 kb on - strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.986 kb on - strand, within CCNA_00160at 170.014 kb on - strand, within CCNA_00160at 170.065 kb on - strand, within CCNA_00160at 170.067 kb on - strand, within CCNA_00160at 170.076 kb on - strand, within CCNA_00160at 170.110 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.133 kb on - strand, within CCNA_00160at 170.143 kb on + strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.230 kb on + strand, within CCNA_00160at 170.230 kb on + strand, within CCNA_00160at 170.235 kb on + strand, within CCNA_00160at 170.243 kb on - strand, within CCNA_00160at 170.267 kb on + strand, within CCNA_00160at 170.268 kb on - strand, within CCNA_00160at 170.275 kb on - strand, within CCNA_00160at 170.299 kb on + strand, within CCNA_00160at 170.306 kb on - strand, within CCNA_00160at 170.308 kb on - strand, within CCNA_00160at 170.329 kb on - strand, within CCNA_00160at 170.338 kb on + strand, within CCNA_00160at 170.360 kb on + strand, within CCNA_00160at 170.360 kb on + strand, within CCNA_00160at 170.360 kb on + strand, within CCNA_00160at 170.368 kb on - strand, within CCNA_00160at 170.368 kb on - strand, within CCNA_00160at 170.368 kb on - strand, within CCNA_00160at 170.375 kb on + strand, within CCNA_00160at 170.389 kb on + strand, within CCNA_00160at 170.397 kb on - strand, within CCNA_00160at 170.458 kb on + strandat 170.459 kb on - strandat 170.468 kb on + strandat 170.475 kb on + strandat 170.476 kb on - strandat 170.482 kb on + strandat 170.487 kb on + strandat 170.495 kb on - strandat 170.551 kb on + strandat 170.551 kb on + strandat 170.551 kb on + strandat 170.559 kb on - strandat 170.559 kb on - strandat 170.581 kb on + strandat 170.664 kb on + strandat 170.672 kb on - strandat 170.677 kb on - strandat 170.790 kb on + strandat 170.790 kb on + strandat 170.790 kb on + strandat 170.868 kb on - strandat 170.910 kb on - strandat 170.910 kb on - strandat 170.963 kb on + strandat 170.978 kb on - strandat 171.022 kb on + strand, within CCNA_00161at 171.032 kb on + strand, within CCNA_00161at 171.051 kb on - strand, within CCNA_00161at 171.179 kb on - strand, within CCNA_00161at 171.182 kb on + strand, within CCNA_00161at 171.256 kb on + strand, within CCNA_00161at 171.266 kb on + strand, within CCNA_00161at 171.299 kb on + strand, within CCNA_00161at 171.349 kb on + strand, within CCNA_00161at 171.364 kb on + strand, within CCNA_00161at 171.446 kb on - strand, within CCNA_00161at 171.525 kb on + strandat 171.525 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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169,259 - -0.1
169,302 + +0.2
169,315 - -1.8
169,315 - +0.5
169,315 - -0.2
169,374 - -1.3
169,433 - -1.5
169,452 + -1.3
169,452 + +0.4
169,462 - +0.4
169,462 - -0.6
169,464 + +0.1
169,472 - -0.8
169,498 - +0.0
169,512 + CCNA_00160 0.11 -0.1
169,535 - CCNA_00160 0.13 -0.5
169,564 + CCNA_00160 0.16 +0.0
169,605 + CCNA_00160 0.19 +0.3
169,618 + CCNA_00160 0.20 -0.6
169,632 - CCNA_00160 0.21 +1.4
169,647 + CCNA_00160 0.23 -0.2
169,656 + CCNA_00160 0.24 +0.3
169,668 + CCNA_00160 0.25 -0.2
169,673 + CCNA_00160 0.25 +0.6
169,697 + CCNA_00160 0.27 +0.3
169,714 - CCNA_00160 0.29 -0.1
169,714 - CCNA_00160 0.29 -0.2
169,763 + CCNA_00160 0.33 -0.4
169,771 - CCNA_00160 0.34 -0.3
169,771 - CCNA_00160 0.34 -2.2
169,780 - CCNA_00160 0.34 -0.3
169,786 - CCNA_00160 0.35 +1.0
169,816 - CCNA_00160 0.38 -1.2
169,827 + CCNA_00160 0.39 -1.7
169,827 + CCNA_00160 0.39 +0.0
169,830 - CCNA_00160 0.39 -0.2
169,837 - CCNA_00160 0.39 -1.2
169,854 + CCNA_00160 0.41 -0.6
169,869 + CCNA_00160 0.42 -0.2
169,872 - CCNA_00160 0.43 -0.5
169,872 - CCNA_00160 0.43 -0.5
169,874 + CCNA_00160 0.43 +0.3
169,874 + CCNA_00160 0.43 -0.9
169,877 - CCNA_00160 0.43 +0.2
169,882 - CCNA_00160 0.43 -1.2
169,882 - CCNA_00160 0.43 -0.9
169,882 - CCNA_00160 0.43 +0.0
169,882 - CCNA_00160 0.43 -0.4
169,884 + CCNA_00160 0.44 -0.2
169,922 + CCNA_00160 0.47 +0.0
169,922 + CCNA_00160 0.47 +0.2
169,922 + CCNA_00160 0.47 -0.8
169,922 + CCNA_00160 0.47 +0.4
169,923 + CCNA_00160 0.47 +0.0
169,931 - CCNA_00160 0.48 -0.3
169,949 - CCNA_00160 0.49 -0.1
169,955 + CCNA_00160 0.50 -0.1
169,963 - CCNA_00160 0.51 -1.5
169,978 + CCNA_00160 0.52 +1.3
169,978 + CCNA_00160 0.52 -0.2
169,978 + CCNA_00160 0.52 +0.5
169,986 - CCNA_00160 0.53 -0.8
170,014 - CCNA_00160 0.55 -0.4
170,065 - CCNA_00160 0.59 +0.1
170,067 - CCNA_00160 0.60 +0.6
170,076 - CCNA_00160 0.60 -0.6
170,110 + CCNA_00160 0.63 -0.9
170,125 + CCNA_00160 0.65 +0.6
170,125 + CCNA_00160 0.65 +0.9
170,125 + CCNA_00160 0.65 -0.1
170,133 - CCNA_00160 0.65 -0.0
170,143 + CCNA_00160 0.66 +0.2
170,194 + CCNA_00160 0.71 +0.3
170,202 - CCNA_00160 0.71 -0.1
170,230 + CCNA_00160 0.74 +0.4
170,230 + CCNA_00160 0.74 -0.2
170,235 + CCNA_00160 0.74 -0.6
170,243 - CCNA_00160 0.75 +0.7
170,267 + CCNA_00160 0.77 -0.0
170,268 - CCNA_00160 0.77 -0.4
170,275 - CCNA_00160 0.78 -1.4
170,299 + CCNA_00160 0.80 +0.7
170,306 - CCNA_00160 0.81 -0.4
170,308 - CCNA_00160 0.81 +0.2
170,329 - CCNA_00160 0.83 +0.8
170,338 + CCNA_00160 0.83 +2.3
170,360 + CCNA_00160 0.85 -1.4
170,360 + CCNA_00160 0.85 -1.2
170,360 + CCNA_00160 0.85 -1.2
170,368 - CCNA_00160 0.86 -0.6
170,368 - CCNA_00160 0.86 -0.9
170,368 - CCNA_00160 0.86 -0.4
170,375 + CCNA_00160 0.87 +0.3
170,389 + CCNA_00160 0.88 +0.7
170,397 - CCNA_00160 0.89 +0.0
170,458 + +0.4
170,459 - -0.8
170,468 + -1.0
170,475 + -0.7
170,476 - -1.0
170,482 + -0.3
170,487 + -0.5
170,495 - -0.4
170,551 + -0.3
170,551 + -1.0
170,551 + -0.9
170,559 - -0.9
170,559 - -1.0
170,581 + -0.9
170,664 + -0.5
170,672 - +0.2
170,677 - -1.4
170,790 + -0.0
170,790 + -0.1
170,790 + +0.0
170,868 - +0.2
170,910 - -0.2
170,910 - -0.6
170,963 + -1.0
170,978 - +0.2
171,022 + CCNA_00161 0.11 +0.7
171,032 + CCNA_00161 0.13 +0.1
171,051 - CCNA_00161 0.16 -0.4
171,179 - CCNA_00161 0.36 +0.2
171,182 + CCNA_00161 0.37 -0.3
171,256 + CCNA_00161 0.49 +0.6
171,266 + CCNA_00161 0.50 -0.1
171,299 + CCNA_00161 0.56 +0.7
171,349 + CCNA_00161 0.63 +0.4
171,364 + CCNA_00161 0.66 -0.3
171,446 - CCNA_00161 0.79 +0.1
171,525 + +0.2
171,525 + +0.2

Or see this region's nucleotide sequence