Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00128

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00126 and CCNA_00127 are separated by 219 nucleotidesCCNA_00127 and CCNA_00128 are separated by 234 nucleotidesCCNA_00128 and CCNA_00129 are separated by 82 nucleotidesCCNA_00129 and CCNA_00130 are separated by 3 nucleotides CCNA_00126: CCNA_00126 - glutathione S-transferase, at 136,184 to 136,591 _00126 CCNA_00127: CCNA_00127 - KTSC domain protein, at 136,811 to 137,011 _00127 CCNA_00128: CCNA_00128 - argininosuccinate synthase, at 137,246 to 138,472 _00128 CCNA_00129: CCNA_00129 - hypothetical protein, at 138,555 to 138,917 _00129 CCNA_00130: CCNA_00130 - Kup system potassium uptake protein, at 138,921 to 140,918 _00130 Position (kb) 137 138 139Strain fitness (log2 ratio) -2 -1 0 1 2at 136.275 kb on + strand, within CCNA_00126at 136.307 kb on - strand, within CCNA_00126at 136.331 kb on + strand, within CCNA_00126at 136.339 kb on - strand, within CCNA_00126at 136.368 kb on + strand, within CCNA_00126at 136.368 kb on + strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.387 kb on + strand, within CCNA_00126at 136.387 kb on + strand, within CCNA_00126at 136.425 kb on + strand, within CCNA_00126at 136.425 kb on + strand, within CCNA_00126at 136.425 kb on + strand, within CCNA_00126at 136.433 kb on - strand, within CCNA_00126at 136.433 kb on - strand, within CCNA_00126at 136.433 kb on - strand, within CCNA_00126at 136.433 kb on - strand, within CCNA_00126at 136.433 kb on - strand, within CCNA_00126at 136.465 kb on - strand, within CCNA_00126at 136.536 kb on - strand, within CCNA_00126at 136.563 kb on - strandat 136.588 kb on - strandat 136.588 kb on - strandat 136.601 kb on - strandat 136.601 kb on - strandat 136.602 kb on + strandat 136.636 kb on + strandat 136.677 kb on + strandat 136.677 kb on + strandat 136.679 kb on + strandat 136.704 kb on + strandat 136.742 kb on + strandat 136.785 kb on + strandat 136.801 kb on + strandat 136.801 kb on + strandat 136.809 kb on - strandat 136.859 kb on - strand, within CCNA_00127at 136.859 kb on - strand, within CCNA_00127at 136.888 kb on - strand, within CCNA_00127at 136.898 kb on - strand, within CCNA_00127at 136.924 kb on + strand, within CCNA_00127at 136.924 kb on + strand, within CCNA_00127at 136.924 kb on + strand, within CCNA_00127at 136.944 kb on - strand, within CCNA_00127at 136.980 kb on + strand, within CCNA_00127at 136.994 kb on + strandat 137.005 kb on + strandat 137.014 kb on - strandat 137.014 kb on - strandat 137.073 kb on + strandat 137.075 kb on + strandat 137.075 kb on + strandat 137.075 kb on + strandat 137.086 kb on + strandat 137.086 kb on + strandat 137.094 kb on - strandat 137.099 kb on - strandat 137.101 kb on + strandat 137.114 kb on - strandat 137.114 kb on - strandat 137.114 kb on - strandat 137.226 kb on - strandat 137.233 kb on + strandat 137.331 kb on - strandat 137.555 kb on - strand, within CCNA_00128at 137.619 kb on - strand, within CCNA_00128at 137.877 kb on + strand, within CCNA_00128at 138.335 kb on - strand, within CCNA_00128at 138.519 kb on + strandat 138.534 kb on + strandat 138.534 kb on + strandat 138.553 kb on + strandat 138.578 kb on - strandat 138.626 kb on - strand, within CCNA_00129at 138.709 kb on - strand, within CCNA_00129at 138.709 kb on - strand, within CCNA_00129at 138.765 kb on - strand, within CCNA_00129at 138.841 kb on - strand, within CCNA_00129at 138.859 kb on + strand, within CCNA_00129at 138.864 kb on + strand, within CCNA_00129at 138.864 kb on + strand, within CCNA_00129at 138.900 kb on + strandat 138.908 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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136,275 + CCNA_00126 0.22 +1.2
136,307 - CCNA_00126 0.30 -1.0
136,331 + CCNA_00126 0.36 -1.1
136,339 - CCNA_00126 0.38 -0.1
136,368 + CCNA_00126 0.45 +0.3
136,368 + CCNA_00126 0.45 +0.3
136,376 - CCNA_00126 0.47 +0.5
136,376 - CCNA_00126 0.47 +0.6
136,376 - CCNA_00126 0.47 +0.4
136,376 - CCNA_00126 0.47 +0.6
136,376 - CCNA_00126 0.47 +0.2
136,376 - CCNA_00126 0.47 +0.8
136,387 + CCNA_00126 0.50 -0.5
136,387 + CCNA_00126 0.50 -0.9
136,425 + CCNA_00126 0.59 +0.3
136,425 + CCNA_00126 0.59 -0.4
136,425 + CCNA_00126 0.59 +0.4
136,433 - CCNA_00126 0.61 +0.2
136,433 - CCNA_00126 0.61 +0.4
136,433 - CCNA_00126 0.61 -0.2
136,433 - CCNA_00126 0.61 -0.2
136,433 - CCNA_00126 0.61 -0.3
136,465 - CCNA_00126 0.69 +0.2
136,536 - CCNA_00126 0.86 +0.0
136,563 - -0.9
136,588 - +0.5
136,588 - +0.5
136,601 - +0.3
136,601 - -0.2
136,602 + +0.9
136,636 + -0.4
136,677 + +0.2
136,677 + +0.4
136,679 + +0.5
136,704 + +0.6
136,742 + -0.9
136,785 + -0.4
136,801 + +0.3
136,801 + -0.7
136,809 - +0.1
136,859 - CCNA_00127 0.24 +0.8
136,859 - CCNA_00127 0.24 +0.0
136,888 - CCNA_00127 0.38 +0.5
136,898 - CCNA_00127 0.43 -0.0
136,924 + CCNA_00127 0.56 -1.1
136,924 + CCNA_00127 0.56 +0.4
136,924 + CCNA_00127 0.56 -0.1
136,944 - CCNA_00127 0.66 -0.2
136,980 + CCNA_00127 0.84 +0.2
136,994 + +0.8
137,005 + -0.9
137,014 - +0.7
137,014 - -1.3
137,073 + -0.4
137,075 + +1.6
137,075 + -1.4
137,075 + +0.5
137,086 + +0.2
137,086 + +0.5
137,094 - -0.3
137,099 - +0.0
137,101 + +2.6
137,114 - +0.1
137,114 - +0.5
137,114 - -0.4
137,226 - -0.8
137,233 + +0.6
137,331 - +0.6
137,555 - CCNA_00128 0.25 -0.3
137,619 - CCNA_00128 0.30 -0.6
137,877 + CCNA_00128 0.51 +0.6
138,335 - CCNA_00128 0.89 -0.0
138,519 + +0.2
138,534 + -1.0
138,534 + -0.0
138,553 + -0.0
138,578 - +1.5
138,626 - CCNA_00129 0.20 +0.0
138,709 - CCNA_00129 0.42 -1.7
138,709 - CCNA_00129 0.42 -2.0
138,765 - CCNA_00129 0.58 +0.1
138,841 - CCNA_00129 0.79 +0.2
138,859 + CCNA_00129 0.84 -0.7
138,864 + CCNA_00129 0.85 +0.2
138,864 + CCNA_00129 0.85 -0.5
138,900 + +1.4
138,908 - -1.8

Or see this region's nucleotide sequence