Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00073

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00071 and CCNA_00072 are separated by 43 nucleotidesCCNA_00072 and CCNA_00073 overlap by 4 nucleotidesCCNA_00073 and CCNA_R0001 are separated by 41 nucleotidesCCNA_R0001 and CCNA_00074 are separated by 251 nucleotides CCNA_00071: CCNA_00071 - uroporphyrinogen-III synthase, at 72,950 to 73,636 _00071 CCNA_00072: CCNA_00072 - hypothetical protein, at 73,680 to 74,576 _00072 CCNA_00073: CCNA_00073 - HemY domain membrane protein, at 74,573 to 76,108 _00073 CCNA_R0001: CCNA_R0001 - tRNA-Thr, at 76,150 to 76,225 _R0001 CCNA_00074: CCNA_00074 - multifunctional fatty acid oxidation complex subunit alpha FadJ, at 76,477 to 78,678 _00074 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -1 0 1 2at 73.632 kb on + strandat 73.650 kb on - strandat 73.775 kb on + strand, within CCNA_00072at 73.781 kb on + strand, within CCNA_00072at 73.822 kb on + strand, within CCNA_00072at 73.822 kb on + strand, within CCNA_00072at 73.822 kb on + strand, within CCNA_00072at 73.822 kb on + strand, within CCNA_00072at 73.822 kb on + strand, within CCNA_00072at 73.822 kb on + strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.841 kb on - strand, within CCNA_00072at 73.973 kb on + strand, within CCNA_00072at 74.089 kb on + strand, within CCNA_00072at 74.112 kb on + strand, within CCNA_00072at 74.112 kb on + strand, within CCNA_00072at 74.112 kb on - strand, within CCNA_00072at 74.120 kb on - strand, within CCNA_00072at 74.199 kb on + strand, within CCNA_00072at 74.245 kb on + strand, within CCNA_00072at 74.276 kb on + strand, within CCNA_00072at 74.284 kb on - strand, within CCNA_00072at 74.298 kb on + strand, within CCNA_00072at 74.298 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.305 kb on + strand, within CCNA_00072at 74.306 kb on - strand, within CCNA_00072at 74.308 kb on - strand, within CCNA_00072at 74.334 kb on + strand, within CCNA_00072at 74.353 kb on + strand, within CCNA_00072at 74.357 kb on - strand, within CCNA_00072at 74.390 kb on + strand, within CCNA_00072at 74.424 kb on - strand, within CCNA_00072at 74.509 kb on - strandat 74.523 kb on + strandat 74.531 kb on - strandat 74.536 kb on - strandat 74.625 kb on + strandat 74.625 kb on + strandat 74.630 kb on + strandat 74.680 kb on - strandat 74.719 kb on + strandat 74.743 kb on + strand, within CCNA_00073at 74.743 kb on + strand, within CCNA_00073at 74.751 kb on - strand, within CCNA_00073at 74.766 kb on - strand, within CCNA_00073at 74.768 kb on + strand, within CCNA_00073at 74.782 kb on - strand, within CCNA_00073at 74.789 kb on + strand, within CCNA_00073at 74.800 kb on + strand, within CCNA_00073at 74.800 kb on + strand, within CCNA_00073at 74.802 kb on - strand, within CCNA_00073at 74.808 kb on - strand, within CCNA_00073at 74.821 kb on + strand, within CCNA_00073at 74.901 kb on + strand, within CCNA_00073at 74.919 kb on - strand, within CCNA_00073at 74.922 kb on + strand, within CCNA_00073at 74.935 kb on - strand, within CCNA_00073at 74.940 kb on - strand, within CCNA_00073at 74.992 kb on - strand, within CCNA_00073at 75.005 kb on + strand, within CCNA_00073at 75.045 kb on + strand, within CCNA_00073at 75.053 kb on - strand, within CCNA_00073at 75.072 kb on - strand, within CCNA_00073at 75.116 kb on - strand, within CCNA_00073at 75.151 kb on + strand, within CCNA_00073at 75.225 kb on - strand, within CCNA_00073at 75.304 kb on + strand, within CCNA_00073at 75.373 kb on + strand, within CCNA_00073at 75.383 kb on - strand, within CCNA_00073at 75.387 kb on - strand, within CCNA_00073at 75.417 kb on - strand, within CCNA_00073at 75.436 kb on + strand, within CCNA_00073at 75.436 kb on + strand, within CCNA_00073at 75.462 kb on - strand, within CCNA_00073at 75.473 kb on - strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.529 kb on + strand, within CCNA_00073at 75.563 kb on + strand, within CCNA_00073at 75.651 kb on - strand, within CCNA_00073at 75.663 kb on - strand, within CCNA_00073at 75.716 kb on + strand, within CCNA_00073at 75.716 kb on + strand, within CCNA_00073at 75.776 kb on + strand, within CCNA_00073at 75.776 kb on + strand, within CCNA_00073at 75.784 kb on + strand, within CCNA_00073at 75.848 kb on - strand, within CCNA_00073at 75.956 kb on + strandat 75.956 kb on + strandat 75.998 kb on + strandat 76.059 kb on + strandat 76.278 kb on + strandat 76.278 kb on + strandat 76.285 kb on - strandat 76.286 kb on - strandat 76.436 kb on + strandat 76.462 kb on + strandat 76.465 kb on - strandat 76.469 kb on + strandat 76.471 kb on - strandat 76.474 kb on + strandat 76.487 kb on + strandat 76.487 kb on + strandat 76.487 kb on + strandat 76.495 kb on - strandat 76.512 kb on + strandat 76.520 kb on + strandat 76.559 kb on - strandat 76.600 kb on + strandat 76.608 kb on - strandat 76.620 kb on - strandat 76.650 kb on - strandat 76.670 kb on + strandat 76.670 kb on + strandat 76.675 kb on + strandat 76.675 kb on + strandat 76.683 kb on - strandat 76.683 kb on - strandat 76.683 kb on - strandat 76.725 kb on + strand, within CCNA_00074at 76.725 kb on + strand, within CCNA_00074at 76.733 kb on - strand, within CCNA_00074at 76.835 kb on - strand, within CCNA_00074at 76.857 kb on - strand, within CCNA_00074at 76.886 kb on + strand, within CCNA_00074at 76.992 kb on + strand, within CCNA_00074at 77.011 kb on + strand, within CCNA_00074at 77.011 kb on + strand, within CCNA_00074at 77.011 kb on + strand, within CCNA_00074at 77.011 kb on + strand, within CCNA_00074at 77.011 kb on + strand, within CCNA_00074at 77.019 kb on - strand, within CCNA_00074at 77.099 kb on - strand, within CCNA_00074

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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73,632 + -0.6
73,650 - +0.4
73,775 + CCNA_00072 0.11 -0.2
73,781 + CCNA_00072 0.11 -0.2
73,822 + CCNA_00072 0.16 -0.0
73,822 + CCNA_00072 0.16 -0.6
73,822 + CCNA_00072 0.16 +0.2
73,822 + CCNA_00072 0.16 +0.0
73,822 + CCNA_00072 0.16 +0.5
73,822 + CCNA_00072 0.16 +0.8
73,830 - CCNA_00072 0.17 -0.6
73,830 - CCNA_00072 0.17 +0.6
73,841 - CCNA_00072 0.18 -0.5
73,973 + CCNA_00072 0.33 +0.0
74,089 + CCNA_00072 0.46 +0.3
74,112 + CCNA_00072 0.48 +0.0
74,112 + CCNA_00072 0.48 -0.3
74,112 - CCNA_00072 0.48 +0.9
74,120 - CCNA_00072 0.49 +0.3
74,199 + CCNA_00072 0.58 -0.9
74,245 + CCNA_00072 0.63 +0.5
74,276 + CCNA_00072 0.66 +0.5
74,284 - CCNA_00072 0.67 +1.3
74,298 + CCNA_00072 0.69 -0.3
74,298 + CCNA_00072 0.69 +0.7
74,300 + CCNA_00072 0.69 -1.1
74,300 + CCNA_00072 0.69 +0.4
74,300 + CCNA_00072 0.69 +1.1
74,305 + CCNA_00072 0.70 +0.9
74,306 - CCNA_00072 0.70 +0.5
74,308 - CCNA_00072 0.70 -0.2
74,334 + CCNA_00072 0.73 +0.7
74,353 + CCNA_00072 0.75 -0.1
74,357 - CCNA_00072 0.75 +0.6
74,390 + CCNA_00072 0.79 -0.0
74,424 - CCNA_00072 0.83 +0.2
74,509 - +0.3
74,523 + +1.1
74,531 - -0.4
74,536 - +0.1
74,625 + +0.3
74,625 + +0.9
74,630 + -0.3
74,680 - -0.0
74,719 + +0.2
74,743 + CCNA_00073 0.11 +0.0
74,743 + CCNA_00073 0.11 +0.2
74,751 - CCNA_00073 0.12 +0.6
74,766 - CCNA_00073 0.13 +1.1
74,768 + CCNA_00073 0.13 +0.3
74,782 - CCNA_00073 0.14 -0.7
74,789 + CCNA_00073 0.14 -0.7
74,800 + CCNA_00073 0.15 -0.2
74,800 + CCNA_00073 0.15 -0.2
74,802 - CCNA_00073 0.15 +0.1
74,808 - CCNA_00073 0.15 -0.0
74,821 + CCNA_00073 0.16 +0.1
74,901 + CCNA_00073 0.21 -0.3
74,919 - CCNA_00073 0.23 +1.0
74,922 + CCNA_00073 0.23 -0.0
74,935 - CCNA_00073 0.24 +0.0
74,940 - CCNA_00073 0.24 +0.4
74,992 - CCNA_00073 0.27 +0.3
75,005 + CCNA_00073 0.28 +0.3
75,045 + CCNA_00073 0.31 +0.1
75,053 - CCNA_00073 0.31 -0.1
75,072 - CCNA_00073 0.32 -0.0
75,116 - CCNA_00073 0.35 +0.0
75,151 + CCNA_00073 0.38 +0.6
75,225 - CCNA_00073 0.42 -1.7
75,304 + CCNA_00073 0.48 +1.3
75,373 + CCNA_00073 0.52 +0.3
75,383 - CCNA_00073 0.53 +0.9
75,387 - CCNA_00073 0.53 -0.1
75,417 - CCNA_00073 0.55 +1.1
75,436 + CCNA_00073 0.56 -0.2
75,436 + CCNA_00073 0.56 +0.6
75,462 - CCNA_00073 0.58 +0.2
75,473 - CCNA_00073 0.59 +1.2
75,520 - CCNA_00073 0.62 +1.2
75,520 - CCNA_00073 0.62 +0.0
75,520 - CCNA_00073 0.62 +0.7
75,520 - CCNA_00073 0.62 +0.3
75,529 + CCNA_00073 0.62 +0.9
75,563 + CCNA_00073 0.64 +0.0
75,651 - CCNA_00073 0.70 -0.4
75,663 - CCNA_00073 0.71 +0.0
75,716 + CCNA_00073 0.74 +0.0
75,716 + CCNA_00073 0.74 -0.1
75,776 + CCNA_00073 0.78 +0.3
75,776 + CCNA_00073 0.78 +0.7
75,784 + CCNA_00073 0.79 -0.0
75,848 - CCNA_00073 0.83 -0.2
75,956 + +1.7
75,956 + -0.1
75,998 + +0.3
76,059 + +0.8
76,278 + +0.2
76,278 + +0.2
76,285 - -0.0
76,286 - -0.1
76,436 + +0.3
76,462 + -0.1
76,465 - -0.2
76,469 + +0.4
76,471 - -0.2
76,474 + +0.4
76,487 + +0.3
76,487 + +0.4
76,487 + -0.4
76,495 - +0.6
76,512 + -0.4
76,520 + -0.1
76,559 - -0.2
76,600 + -0.1
76,608 - -0.2
76,620 - +0.2
76,650 - +1.2
76,670 + +0.5
76,670 + +0.1
76,675 + +0.3
76,675 + +0.3
76,683 - -0.4
76,683 - +0.0
76,683 - -0.1
76,725 + CCNA_00074 0.11 +0.8
76,725 + CCNA_00074 0.11 -1.4
76,733 - CCNA_00074 0.12 -0.1
76,835 - CCNA_00074 0.16 +0.0
76,857 - CCNA_00074 0.17 +0.4
76,886 + CCNA_00074 0.19 +0.2
76,992 + CCNA_00074 0.23 +0.5
77,011 + CCNA_00074 0.24 -0.3
77,011 + CCNA_00074 0.24 +0.2
77,011 + CCNA_00074 0.24 -0.6
77,011 + CCNA_00074 0.24 -1.0
77,011 + CCNA_00074 0.24 +0.1
77,019 - CCNA_00074 0.25 +1.8
77,099 - CCNA_00074 0.28 -0.2

Or see this region's nucleotide sequence