Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21615

Experiment: m.b. Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21605 and CA264_21610 are separated by 16 nucleotidesCA264_21610 and CA264_21615 are separated by 98 nucleotidesCA264_21615 and CA264_21620 are separated by 3 nucleotides CA264_21605: CA264_21605 - hypothetical protein, at 189,241 to 190,242 _21605 CA264_21610: CA264_21610 - hypothetical protein, at 190,259 to 190,885 _21610 CA264_21615: CA264_21615 - hypothetical protein, at 190,984 to 191,340 _21615 CA264_21620: CA264_21620 - hypothetical protein, at 191,344 to 192,588 _21620 Position (kb) 190 191 192Strain fitness (log2 ratio) -2 -1 0 1at 190.007 kb on + strand, within CA264_21605at 190.011 kb on + strand, within CA264_21605at 190.011 kb on + strand, within CA264_21605at 190.011 kb on + strand, within CA264_21605at 190.012 kb on - strand, within CA264_21605at 190.012 kb on - strand, within CA264_21605at 190.012 kb on - strand, within CA264_21605at 190.012 kb on - strand, within CA264_21605at 190.012 kb on - strand, within CA264_21605at 190.040 kb on + strand, within CA264_21605at 190.144 kb on - strandat 190.166 kb on + strandat 190.166 kb on + strandat 190.189 kb on - strandat 190.229 kb on + strandat 190.229 kb on + strandat 190.231 kb on + strandat 190.231 kb on + strandat 190.232 kb on - strandat 190.232 kb on - strandat 190.232 kb on - strandat 190.241 kb on - strandat 190.388 kb on + strand, within CA264_21610at 190.388 kb on + strand, within CA264_21610at 190.388 kb on + strand, within CA264_21610at 190.388 kb on + strand, within CA264_21610at 190.388 kb on + strand, within CA264_21610at 190.446 kb on - strand, within CA264_21610at 190.446 kb on - strand, within CA264_21610at 190.500 kb on + strand, within CA264_21610at 190.586 kb on + strand, within CA264_21610at 190.621 kb on + strand, within CA264_21610at 190.622 kb on - strand, within CA264_21610at 190.762 kb on + strand, within CA264_21610at 190.880 kb on + strandat 190.881 kb on - strandat 190.881 kb on - strandat 190.881 kb on - strandat 190.895 kb on + strandat 190.921 kb on + strandat 190.941 kb on - strandat 190.942 kb on + strandat 190.945 kb on + strandat 190.952 kb on + strandat 190.953 kb on - strandat 190.953 kb on - strandat 190.953 kb on - strandat 190.970 kb on - strandat 190.970 kb on - strandat 190.993 kb on - strandat 191.236 kb on + strand, within CA264_21615at 191.237 kb on - strand, within CA264_21615at 191.237 kb on - strand, within CA264_21615at 191.237 kb on - strand, within CA264_21615at 191.259 kb on + strand, within CA264_21615at 191.259 kb on + strand, within CA264_21615at 191.260 kb on - strand, within CA264_21615at 191.381 kb on - strandat 191.384 kb on + strandat 191.450 kb on - strandat 191.575 kb on + strand, within CA264_21620at 191.662 kb on - strand, within CA264_21620at 191.662 kb on - strand, within CA264_21620at 191.683 kb on + strand, within CA264_21620at 191.795 kb on - strand, within CA264_21620at 191.813 kb on + strand, within CA264_21620at 191.814 kb on - strand, within CA264_21620at 191.814 kb on - strand, within CA264_21620at 191.870 kb on + strand, within CA264_21620at 191.870 kb on + strand, within CA264_21620at 191.874 kb on + strand, within CA264_21620at 191.940 kb on + strand, within CA264_21620at 191.942 kb on + strand, within CA264_21620at 191.943 kb on - strand, within CA264_21620at 192.152 kb on - strand, within CA264_21620at 192.188 kb on + strand, within CA264_21620at 192.188 kb on + strand, within CA264_21620at 192.188 kb on + strand, within CA264_21620at 192.189 kb on - strand, within CA264_21620at 192.230 kb on - strand, within CA264_21620at 192.284 kb on + strand, within CA264_21620at 192.315 kb on + strand, within CA264_21620at 192.318 kb on + strand, within CA264_21620

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
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190,007 + CA264_21605 0.76 +0.4
190,011 + CA264_21605 0.77 -0.6
190,011 + CA264_21605 0.77 -0.3
190,011 + CA264_21605 0.77 -0.2
190,012 - CA264_21605 0.77 -0.3
190,012 - CA264_21605 0.77 -0.3
190,012 - CA264_21605 0.77 -0.3
190,012 - CA264_21605 0.77 +0.4
190,012 - CA264_21605 0.77 -1.6
190,040 + CA264_21605 0.80 -0.0
190,144 - -1.6
190,166 + +0.2
190,166 + +0.2
190,189 - -0.6
190,229 + +0.3
190,229 + +0.7
190,231 + +0.5
190,231 + -0.4
190,232 - +1.0
190,232 - -1.0
190,232 - -0.2
190,241 - +1.2
190,388 + CA264_21610 0.21 +0.2
190,388 + CA264_21610 0.21 +0.1
190,388 + CA264_21610 0.21 -1.2
190,388 + CA264_21610 0.21 -0.5
190,388 + CA264_21610 0.21 +0.4
190,446 - CA264_21610 0.30 -2.2
190,446 - CA264_21610 0.30 +0.0
190,500 + CA264_21610 0.38 -0.3
190,586 + CA264_21610 0.52 +0.2
190,621 + CA264_21610 0.58 +0.2
190,622 - CA264_21610 0.58 +0.1
190,762 + CA264_21610 0.80 +0.1
190,880 + -0.3
190,881 - +1.0
190,881 - +0.0
190,881 - +0.6
190,895 + +0.4
190,921 + +0.3
190,941 - +0.4
190,942 + +0.2
190,945 + +0.7
190,952 + +0.7
190,953 - +0.8
190,953 - -0.5
190,953 - -0.5
190,970 - +0.5
190,970 - -0.7
190,993 - +0.2
191,236 + CA264_21615 0.71 +0.9
191,237 - CA264_21615 0.71 +0.4
191,237 - CA264_21615 0.71 -1.6
191,237 - CA264_21615 0.71 -1.1
191,259 + CA264_21615 0.77 -0.5
191,259 + CA264_21615 0.77 +1.0
191,260 - CA264_21615 0.77 -1.3
191,381 - -1.3
191,384 + -0.7
191,450 - +0.3
191,575 + CA264_21620 0.19 +0.1
191,662 - CA264_21620 0.26 +0.2
191,662 - CA264_21620 0.26 +0.4
191,683 + CA264_21620 0.27 -0.1
191,795 - CA264_21620 0.36 +0.6
191,813 + CA264_21620 0.38 +1.2
191,814 - CA264_21620 0.38 -0.6
191,814 - CA264_21620 0.38 -0.7
191,870 + CA264_21620 0.42 +1.0
191,870 + CA264_21620 0.42 -0.1
191,874 + CA264_21620 0.43 -0.1
191,940 + CA264_21620 0.48 -0.1
191,942 + CA264_21620 0.48 -0.3
191,943 - CA264_21620 0.48 -0.1
192,152 - CA264_21620 0.65 -1.5
192,188 + CA264_21620 0.68 +0.5
192,188 + CA264_21620 0.68 -0.7
192,188 + CA264_21620 0.68 -0.2
192,189 - CA264_21620 0.68 -0.4
192,230 - CA264_21620 0.71 -2.1
192,284 + CA264_21620 0.76 -0.4
192,315 + CA264_21620 0.78 +1.2
192,318 + CA264_21620 0.78 +0.0

Or see this region's nucleotide sequence