Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18335

Experiment: m.b. Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18325 and CA264_18330 are separated by 169 nucleotidesCA264_18330 and CA264_18335 are separated by 160 nucleotidesCA264_18335 and CA264_18340 are separated by 259 nucleotides CA264_18325: CA264_18325 - MarR family transcriptional regulator, at 4,260,870 to 4,261,319 _18325 CA264_18330: CA264_18330 - hypothetical protein, at 4,261,489 to 4,261,938 _18330 CA264_18335: CA264_18335 - peptidase M16, at 4,262,099 to 4,263,358 _18335 CA264_18340: CA264_18340 - dehydrogenase, at 4,263,618 to 4,265,597 _18340 Position (kb) 4262 4263 4264Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4261.299 kb on + strandat 4261.312 kb on - strandat 4261.334 kb on - strandat 4261.399 kb on - strandat 4261.399 kb on - strandat 4261.399 kb on - strandat 4261.402 kb on + strandat 4261.403 kb on - strandat 4261.404 kb on + strandat 4261.422 kb on - strandat 4261.467 kb on + strandat 4261.574 kb on - strand, within CA264_18330at 4261.603 kb on + strand, within CA264_18330at 4261.603 kb on + strand, within CA264_18330at 4261.661 kb on - strand, within CA264_18330at 4261.661 kb on - strand, within CA264_18330at 4261.661 kb on - strand, within CA264_18330at 4261.694 kb on + strand, within CA264_18330at 4261.739 kb on + strand, within CA264_18330at 4261.772 kb on + strand, within CA264_18330at 4261.853 kb on - strand, within CA264_18330at 4261.953 kb on - strandat 4262.031 kb on + strandat 4262.031 kb on + strandat 4262.031 kb on + strandat 4262.031 kb on + strandat 4262.080 kb on + strandat 4262.080 kb on + strandat 4262.081 kb on - strandat 4262.081 kb on - strandat 4262.136 kb on + strandat 4262.265 kb on + strand, within CA264_18335at 4262.468 kb on + strand, within CA264_18335at 4262.468 kb on + strand, within CA264_18335at 4262.469 kb on - strand, within CA264_18335at 4262.532 kb on + strand, within CA264_18335at 4262.561 kb on + strand, within CA264_18335at 4262.620 kb on - strand, within CA264_18335at 4262.628 kb on + strand, within CA264_18335at 4262.628 kb on + strand, within CA264_18335at 4262.629 kb on - strand, within CA264_18335at 4262.629 kb on - strand, within CA264_18335at 4262.657 kb on + strand, within CA264_18335at 4262.657 kb on + strand, within CA264_18335at 4262.713 kb on - strand, within CA264_18335at 4262.713 kb on - strand, within CA264_18335at 4262.713 kb on - strand, within CA264_18335at 4262.799 kb on - strand, within CA264_18335at 4262.817 kb on + strand, within CA264_18335at 4262.818 kb on - strand, within CA264_18335at 4262.867 kb on - strand, within CA264_18335at 4262.902 kb on - strand, within CA264_18335at 4262.916 kb on + strand, within CA264_18335at 4262.917 kb on - strand, within CA264_18335at 4262.917 kb on - strand, within CA264_18335at 4262.967 kb on + strand, within CA264_18335at 4262.993 kb on + strand, within CA264_18335at 4263.043 kb on + strand, within CA264_18335at 4263.044 kb on - strand, within CA264_18335at 4263.102 kb on + strand, within CA264_18335at 4263.103 kb on - strand, within CA264_18335at 4263.103 kb on - strand, within CA264_18335at 4263.264 kb on + strandat 4263.269 kb on + strandat 4263.270 kb on - strandat 4263.328 kb on + strandat 4263.329 kb on - strandat 4263.354 kb on - strandat 4263.359 kb on - strandat 4263.359 kb on - strandat 4263.365 kb on + strandat 4263.366 kb on - strandat 4263.383 kb on + strandat 4263.383 kb on + strandat 4263.383 kb on + strandat 4263.383 kb on + strandat 4263.383 kb on + strandat 4263.383 kb on + strandat 4263.383 kb on + strandat 4263.384 kb on - strandat 4263.384 kb on - strandat 4263.384 kb on - strandat 4263.384 kb on - strandat 4263.384 kb on - strandat 4263.387 kb on + strandat 4263.388 kb on - strandat 4263.436 kb on + strandat 4263.436 kb on + strandat 4263.459 kb on - strandat 4263.461 kb on - strandat 4263.482 kb on + strandat 4263.509 kb on + strandat 4263.516 kb on + strandat 4263.516 kb on + strandat 4263.516 kb on + strandat 4263.517 kb on - strandat 4263.517 kb on - strandat 4263.547 kb on + strandat 4263.553 kb on + strandat 4263.555 kb on + strandat 4263.566 kb on + strandat 4263.595 kb on + strandat 4263.595 kb on + strandat 4263.595 kb on + strandat 4263.596 kb on - strandat 4263.624 kb on + strandat 4263.624 kb on + strandat 4263.625 kb on - strandat 4263.625 kb on - strandat 4263.639 kb on + strandat 4263.659 kb on - strandat 4263.664 kb on + strandat 4263.664 kb on + strandat 4263.665 kb on - strandat 4263.666 kb on + strandat 4263.666 kb on + strandat 4263.675 kb on - strandat 4263.807 kb on + strandat 4264.270 kb on - strand, within CA264_18340

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
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4,261,299 + -0.2
4,261,312 - -0.1
4,261,334 - +0.8
4,261,399 - -0.1
4,261,399 - -0.2
4,261,399 - -0.9
4,261,402 + +0.1
4,261,403 - -1.0
4,261,404 + -0.9
4,261,422 - -0.4
4,261,467 + -1.3
4,261,574 - CA264_18330 0.19 -0.2
4,261,603 + CA264_18330 0.25 -0.0
4,261,603 + CA264_18330 0.25 +1.1
4,261,661 - CA264_18330 0.38 +0.0
4,261,661 - CA264_18330 0.38 +1.4
4,261,661 - CA264_18330 0.38 +1.4
4,261,694 + CA264_18330 0.46 +0.3
4,261,739 + CA264_18330 0.56 -0.2
4,261,772 + CA264_18330 0.63 -1.8
4,261,853 - CA264_18330 0.81 +0.1
4,261,953 - -0.3
4,262,031 + -0.3
4,262,031 + -0.8
4,262,031 + -0.4
4,262,031 + -0.4
4,262,080 + -0.0
4,262,080 + -0.5
4,262,081 - -0.0
4,262,081 - +0.6
4,262,136 + +0.1
4,262,265 + CA264_18335 0.13 +0.2
4,262,468 + CA264_18335 0.29 +0.3
4,262,468 + CA264_18335 0.29 +0.1
4,262,469 - CA264_18335 0.29 -0.3
4,262,532 + CA264_18335 0.34 -0.4
4,262,561 + CA264_18335 0.37 -1.9
4,262,620 - CA264_18335 0.41 +0.7
4,262,628 + CA264_18335 0.42 -0.5
4,262,628 + CA264_18335 0.42 +1.1
4,262,629 - CA264_18335 0.42 +0.3
4,262,629 - CA264_18335 0.42 -0.6
4,262,657 + CA264_18335 0.44 -0.4
4,262,657 + CA264_18335 0.44 +0.1
4,262,713 - CA264_18335 0.49 +0.4
4,262,713 - CA264_18335 0.49 +0.5
4,262,713 - CA264_18335 0.49 +1.1
4,262,799 - CA264_18335 0.56 +0.5
4,262,817 + CA264_18335 0.57 +0.3
4,262,818 - CA264_18335 0.57 -0.6
4,262,867 - CA264_18335 0.61 +0.1
4,262,902 - CA264_18335 0.64 -1.8
4,262,916 + CA264_18335 0.65 -0.6
4,262,917 - CA264_18335 0.65 -1.2
4,262,917 - CA264_18335 0.65 +0.6
4,262,967 + CA264_18335 0.69 -0.4
4,262,993 + CA264_18335 0.71 +0.1
4,263,043 + CA264_18335 0.75 +0.4
4,263,044 - CA264_18335 0.75 -0.4
4,263,102 + CA264_18335 0.80 -0.4
4,263,103 - CA264_18335 0.80 +0.4
4,263,103 - CA264_18335 0.80 -0.2
4,263,264 + -0.5
4,263,269 + +0.1
4,263,270 - +0.2
4,263,328 + -0.6
4,263,329 - -0.2
4,263,354 - +0.9
4,263,359 - +0.3
4,263,359 - +0.9
4,263,365 + -0.5
4,263,366 - -1.3
4,263,383 + +0.0
4,263,383 + +2.7
4,263,383 + +1.2
4,263,383 + -3.2
4,263,383 + -0.3
4,263,383 + -0.9
4,263,383 + +0.7
4,263,384 - -0.3
4,263,384 - -0.6
4,263,384 - +0.6
4,263,384 - -0.1
4,263,384 - +0.7
4,263,387 + +1.1
4,263,388 - -1.8
4,263,436 + -2.1
4,263,436 + -0.0
4,263,459 - -0.0
4,263,461 - -1.0
4,263,482 + -0.1
4,263,509 + -0.3
4,263,516 + -0.0
4,263,516 + -1.0
4,263,516 + -1.1
4,263,517 - +0.8
4,263,517 - -0.1
4,263,547 + +0.6
4,263,553 + +0.9
4,263,555 + +0.5
4,263,566 + -0.3
4,263,595 + +1.2
4,263,595 + -0.0
4,263,595 + +1.3
4,263,596 - -0.2
4,263,624 + +0.1
4,263,624 + +0.7
4,263,625 - +0.4
4,263,625 - -0.6
4,263,639 + -0.4
4,263,659 - -0.3
4,263,664 + -0.4
4,263,664 + -1.3
4,263,665 - -0.2
4,263,666 + -0.6
4,263,666 + -0.2
4,263,675 - +0.4
4,263,807 + +0.2
4,264,270 - CA264_18340 0.33 +0.3

Or see this region's nucleotide sequence