Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16885

Experiment: m.b. Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16875 and CA264_16880 are separated by 33 nucleotidesCA264_16880 and CA264_16885 are separated by 123 nucleotidesCA264_16885 and CA264_16890 are separated by 3 nucleotidesCA264_16890 and CA264_16895 are separated by 169 nucleotides CA264_16875: CA264_16875 - hypothetical protein, at 3,934,628 to 3,934,933 _16875 CA264_16880: CA264_16880 - hypothetical protein, at 3,934,967 to 3,935,707 _16880 CA264_16885: CA264_16885 - alpha/beta hydrolase, at 3,935,831 to 3,936,547 _16885 CA264_16890: CA264_16890 - septal ring lytic transglycosylase RlpA family lipoprotein, at 3,936,551 to 3,936,988 _16890 CA264_16895: CA264_16895 - hypothetical protein, at 3,937,158 to 3,937,484 _16895 Position (kb) 3935 3936 3937Strain fitness (log2 ratio) -2 -1 0 1 2at 3934.944 kb on + strandat 3934.945 kb on - strandat 3934.952 kb on + strandat 3934.953 kb on - strandat 3934.953 kb on - strandat 3934.953 kb on - strandat 3934.959 kb on + strandat 3934.959 kb on + strandat 3934.959 kb on + strandat 3934.960 kb on - strandat 3934.963 kb on + strandat 3934.986 kb on + strandat 3934.986 kb on + strandat 3934.987 kb on - strandat 3935.055 kb on - strand, within CA264_16880at 3935.055 kb on - strand, within CA264_16880at 3935.085 kb on + strand, within CA264_16880at 3935.085 kb on + strand, within CA264_16880at 3935.085 kb on + strand, within CA264_16880at 3935.085 kb on + strand, within CA264_16880at 3935.086 kb on - strand, within CA264_16880at 3935.087 kb on + strand, within CA264_16880at 3935.088 kb on - strand, within CA264_16880at 3935.100 kb on + strand, within CA264_16880at 3935.105 kb on + strand, within CA264_16880at 3935.105 kb on + strand, within CA264_16880at 3935.106 kb on - strand, within CA264_16880at 3935.159 kb on + strand, within CA264_16880at 3935.159 kb on + strand, within CA264_16880at 3935.160 kb on - strand, within CA264_16880at 3935.160 kb on - strand, within CA264_16880at 3935.231 kb on + strand, within CA264_16880at 3935.283 kb on - strand, within CA264_16880at 3935.284 kb on + strand, within CA264_16880at 3935.284 kb on + strand, within CA264_16880at 3935.300 kb on + strand, within CA264_16880at 3935.300 kb on + strand, within CA264_16880at 3935.300 kb on + strand, within CA264_16880at 3935.366 kb on + strand, within CA264_16880at 3935.489 kb on - strand, within CA264_16880at 3935.509 kb on - strand, within CA264_16880at 3935.638 kb on - strandat 3935.683 kb on - strandat 3935.684 kb on + strandat 3935.690 kb on + strandat 3935.691 kb on - strandat 3935.758 kb on + strandat 3935.759 kb on - strandat 3935.791 kb on - strandat 3935.796 kb on + strandat 3935.806 kb on + strandat 3935.828 kb on - strandat 3935.841 kb on + strandat 3936.032 kb on - strand, within CA264_16885at 3936.052 kb on + strand, within CA264_16885at 3936.052 kb on + strand, within CA264_16885at 3936.053 kb on - strand, within CA264_16885at 3936.053 kb on - strand, within CA264_16885at 3936.056 kb on - strand, within CA264_16885at 3936.065 kb on + strand, within CA264_16885at 3936.262 kb on - strand, within CA264_16885at 3936.262 kb on - strand, within CA264_16885at 3936.432 kb on + strand, within CA264_16885at 3936.432 kb on + strand, within CA264_16885at 3936.433 kb on - strand, within CA264_16885at 3936.433 kb on - strand, within CA264_16885at 3936.438 kb on + strand, within CA264_16885at 3936.532 kb on + strandat 3936.533 kb on - strandat 3936.533 kb on - strandat 3936.540 kb on + strandat 3936.550 kb on + strandat 3936.551 kb on - strandat 3936.601 kb on - strand, within CA264_16890at 3936.624 kb on + strand, within CA264_16890at 3936.625 kb on - strand, within CA264_16890at 3936.625 kb on - strand, within CA264_16890at 3936.710 kb on + strand, within CA264_16890at 3936.810 kb on + strand, within CA264_16890at 3937.013 kb on - strandat 3937.080 kb on + strandat 3937.089 kb on + strandat 3937.102 kb on + strandat 3937.477 kb on + strandat 3937.489 kb on - strandat 3937.489 kb on - strandat 3937.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
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3,934,944 + +0.2
3,934,945 - -0.3
3,934,952 + +0.5
3,934,953 - -0.3
3,934,953 - -0.1
3,934,953 - -0.5
3,934,959 + +1.2
3,934,959 + -0.4
3,934,959 + +0.7
3,934,960 - +0.4
3,934,963 + +0.0
3,934,986 + -0.1
3,934,986 + -1.1
3,934,987 - +0.2
3,935,055 - CA264_16880 0.12 +0.0
3,935,055 - CA264_16880 0.12 +2.7
3,935,085 + CA264_16880 0.16 +0.4
3,935,085 + CA264_16880 0.16 +0.3
3,935,085 + CA264_16880 0.16 +0.0
3,935,085 + CA264_16880 0.16 -0.2
3,935,086 - CA264_16880 0.16 -0.3
3,935,087 + CA264_16880 0.16 -0.8
3,935,088 - CA264_16880 0.16 -0.0
3,935,100 + CA264_16880 0.18 -1.3
3,935,105 + CA264_16880 0.19 -0.4
3,935,105 + CA264_16880 0.19 -0.4
3,935,106 - CA264_16880 0.19 +0.2
3,935,159 + CA264_16880 0.26 -0.0
3,935,159 + CA264_16880 0.26 -0.0
3,935,160 - CA264_16880 0.26 -0.2
3,935,160 - CA264_16880 0.26 +0.7
3,935,231 + CA264_16880 0.36 -0.2
3,935,283 - CA264_16880 0.43 +0.2
3,935,284 + CA264_16880 0.43 +0.6
3,935,284 + CA264_16880 0.43 +0.2
3,935,300 + CA264_16880 0.45 +0.8
3,935,300 + CA264_16880 0.45 -1.1
3,935,300 + CA264_16880 0.45 +1.1
3,935,366 + CA264_16880 0.54 -0.7
3,935,489 - CA264_16880 0.70 +0.4
3,935,509 - CA264_16880 0.73 -0.2
3,935,638 - +0.8
3,935,683 - +0.3
3,935,684 + -0.3
3,935,690 + +0.4
3,935,691 - -2.2
3,935,758 + +0.4
3,935,759 - -1.5
3,935,791 - -0.3
3,935,796 + +0.7
3,935,806 + -0.3
3,935,828 - +0.2
3,935,841 + -1.5
3,936,032 - CA264_16885 0.28 -0.2
3,936,052 + CA264_16885 0.31 -0.5
3,936,052 + CA264_16885 0.31 -0.1
3,936,053 - CA264_16885 0.31 +0.6
3,936,053 - CA264_16885 0.31 -0.9
3,936,056 - CA264_16885 0.31 +0.2
3,936,065 + CA264_16885 0.33 +1.2
3,936,262 - CA264_16885 0.60 -0.1
3,936,262 - CA264_16885 0.60 -0.2
3,936,432 + CA264_16885 0.84 -0.4
3,936,432 + CA264_16885 0.84 -2.1
3,936,433 - CA264_16885 0.84 -0.3
3,936,433 - CA264_16885 0.84 -1.1
3,936,438 + CA264_16885 0.85 +1.4
3,936,532 + -0.5
3,936,533 - +0.1
3,936,533 - -0.3
3,936,540 + +0.2
3,936,550 + +0.1
3,936,551 - +0.6
3,936,601 - CA264_16890 0.11 -0.7
3,936,624 + CA264_16890 0.17 -1.7
3,936,625 - CA264_16890 0.17 -0.4
3,936,625 - CA264_16890 0.17 -1.1
3,936,710 + CA264_16890 0.36 -0.2
3,936,810 + CA264_16890 0.59 -1.3
3,937,013 - +0.5
3,937,080 + -0.4
3,937,089 + -0.2
3,937,102 + -0.3
3,937,477 + +1.7
3,937,489 - -0.0
3,937,489 - +0.1
3,937,489 - +1.3

Or see this region's nucleotide sequence