Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13725

Experiment: m.b. Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13715 and CA264_13720 are separated by 134 nucleotidesCA264_13720 and CA264_13725 are separated by 2 nucleotidesCA264_13725 and CA264_13730 are separated by 154 nucleotidesCA264_13730 and CA264_13735 are separated by 78 nucleotides CA264_13715: CA264_13715 - sorbosone dehydrogenase, at 3,205,817 to 3,207,022 _13715 CA264_13720: CA264_13720 - hypothetical protein, at 3,207,157 to 3,207,711 _13720 CA264_13725: CA264_13725 - alpha/beta hydrolase, at 3,207,714 to 3,208,517 _13725 CA264_13730: CA264_13730 - hypothetical protein, at 3,208,672 to 3,209,214 _13730 CA264_13735: CA264_13735 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,209,293 to 3,210,186 _13735 Position (kb) 3207 3208 3209Strain fitness (log2 ratio) -2 -1 0 1at 3206.805 kb on + strand, within CA264_13715at 3206.805 kb on + strand, within CA264_13715at 3206.806 kb on - strand, within CA264_13715at 3207.042 kb on + strandat 3207.042 kb on + strandat 3207.042 kb on + strandat 3207.050 kb on + strandat 3207.061 kb on - strandat 3207.099 kb on + strandat 3207.104 kb on + strandat 3207.105 kb on - strandat 3207.105 kb on - strandat 3207.108 kb on + strandat 3207.109 kb on - strandat 3207.109 kb on - strandat 3207.110 kb on + strandat 3207.124 kb on + strandat 3207.156 kb on + strandat 3207.195 kb on - strandat 3207.195 kb on - strandat 3207.387 kb on + strand, within CA264_13720at 3207.388 kb on - strand, within CA264_13720at 3207.388 kb on - strand, within CA264_13720at 3207.388 kb on - strand, within CA264_13720at 3207.437 kb on - strand, within CA264_13720at 3207.500 kb on + strand, within CA264_13720at 3207.513 kb on - strand, within CA264_13720at 3207.632 kb on + strand, within CA264_13720at 3207.668 kb on - strandat 3207.716 kb on - strandat 3207.894 kb on - strand, within CA264_13725at 3208.023 kb on + strand, within CA264_13725at 3208.029 kb on - strand, within CA264_13725at 3208.030 kb on + strand, within CA264_13725at 3208.031 kb on - strand, within CA264_13725at 3208.129 kb on + strand, within CA264_13725at 3208.179 kb on + strand, within CA264_13725at 3208.369 kb on + strand, within CA264_13725at 3208.369 kb on + strand, within CA264_13725at 3208.369 kb on + strand, within CA264_13725at 3208.370 kb on - strand, within CA264_13725at 3208.378 kb on + strand, within CA264_13725at 3208.411 kb on + strand, within CA264_13725at 3208.412 kb on - strand, within CA264_13725at 3208.412 kb on - strand, within CA264_13725at 3208.480 kb on + strandat 3208.530 kb on + strandat 3208.530 kb on + strandat 3208.532 kb on + strandat 3208.532 kb on + strandat 3208.533 kb on - strandat 3208.533 kb on - strandat 3208.563 kb on + strandat 3208.564 kb on - strandat 3208.564 kb on - strandat 3208.567 kb on + strandat 3208.568 kb on - strandat 3208.573 kb on + strandat 3208.577 kb on - strandat 3208.577 kb on - strandat 3208.577 kb on - strandat 3208.577 kb on - strandat 3208.596 kb on + strandat 3208.597 kb on - strandat 3208.597 kb on - strandat 3208.597 kb on - strandat 3208.597 kb on - strandat 3208.623 kb on + strandat 3208.736 kb on + strand, within CA264_13730at 3208.736 kb on + strand, within CA264_13730at 3208.784 kb on + strand, within CA264_13730at 3208.800 kb on - strand, within CA264_13730at 3208.802 kb on - strand, within CA264_13730at 3208.812 kb on + strand, within CA264_13730at 3208.812 kb on + strand, within CA264_13730at 3208.821 kb on + strand, within CA264_13730at 3208.950 kb on + strand, within CA264_13730at 3208.951 kb on - strand, within CA264_13730at 3208.966 kb on - strand, within CA264_13730at 3209.130 kb on + strand, within CA264_13730at 3209.131 kb on - strand, within CA264_13730at 3209.151 kb on + strand, within CA264_13730at 3209.217 kb on + strandat 3209.217 kb on + strandat 3209.261 kb on + strandat 3209.262 kb on - strandat 3209.275 kb on - strandat 3209.321 kb on - strandat 3209.322 kb on + strandat 3209.323 kb on - strandat 3209.323 kb on - strandat 3209.323 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
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3,206,805 + CA264_13715 0.82 -0.1
3,206,805 + CA264_13715 0.82 -1.0
3,206,806 - CA264_13715 0.82 -1.6
3,207,042 + -0.1
3,207,042 + +0.0
3,207,042 + +0.7
3,207,050 + +0.3
3,207,061 - -0.2
3,207,099 + -0.4
3,207,104 + +0.8
3,207,105 - -0.7
3,207,105 - +0.7
3,207,108 + +0.3
3,207,109 - +0.6
3,207,109 - -0.3
3,207,110 + -0.3
3,207,124 + -1.4
3,207,156 + +0.1
3,207,195 - -0.2
3,207,195 - +0.8
3,207,387 + CA264_13720 0.41 -0.1
3,207,388 - CA264_13720 0.42 -0.7
3,207,388 - CA264_13720 0.42 +0.4
3,207,388 - CA264_13720 0.42 +0.5
3,207,437 - CA264_13720 0.50 -0.2
3,207,500 + CA264_13720 0.62 +0.8
3,207,513 - CA264_13720 0.64 -0.3
3,207,632 + CA264_13720 0.86 +0.5
3,207,668 - +0.0
3,207,716 - -0.0
3,207,894 - CA264_13725 0.22 -0.4
3,208,023 + CA264_13725 0.38 +0.4
3,208,029 - CA264_13725 0.39 +0.2
3,208,030 + CA264_13725 0.39 +0.0
3,208,031 - CA264_13725 0.39 +1.1
3,208,129 + CA264_13725 0.52 -0.4
3,208,179 + CA264_13725 0.58 -0.5
3,208,369 + CA264_13725 0.81 -0.5
3,208,369 + CA264_13725 0.81 -0.3
3,208,369 + CA264_13725 0.81 +0.2
3,208,370 - CA264_13725 0.82 -0.2
3,208,378 + CA264_13725 0.83 +0.3
3,208,411 + CA264_13725 0.87 +0.7
3,208,412 - CA264_13725 0.87 -0.2
3,208,412 - CA264_13725 0.87 -0.7
3,208,480 + +0.2
3,208,530 + +0.2
3,208,530 + +0.3
3,208,532 + -0.1
3,208,532 + +0.6
3,208,533 - -0.6
3,208,533 - -0.7
3,208,563 + -0.3
3,208,564 - -0.2
3,208,564 - +0.0
3,208,567 + +0.4
3,208,568 - +0.7
3,208,573 + -2.2
3,208,577 - +0.7
3,208,577 - -0.1
3,208,577 - -0.2
3,208,577 - -0.0
3,208,596 + -0.3
3,208,597 - +1.7
3,208,597 - +0.5
3,208,597 - +0.1
3,208,597 - -0.3
3,208,623 + -0.9
3,208,736 + CA264_13730 0.12 -0.6
3,208,736 + CA264_13730 0.12 +0.9
3,208,784 + CA264_13730 0.21 -0.3
3,208,800 - CA264_13730 0.24 -0.4
3,208,802 - CA264_13730 0.24 +0.4
3,208,812 + CA264_13730 0.26 -0.2
3,208,812 + CA264_13730 0.26 -0.0
3,208,821 + CA264_13730 0.27 -0.7
3,208,950 + CA264_13730 0.51 -0.0
3,208,951 - CA264_13730 0.51 -0.1
3,208,966 - CA264_13730 0.54 -0.1
3,209,130 + CA264_13730 0.84 -0.8
3,209,131 - CA264_13730 0.85 +0.9
3,209,151 + CA264_13730 0.88 -0.7
3,209,217 + -0.6
3,209,217 + +0.1
3,209,261 + -0.6
3,209,262 - -0.2
3,209,275 - +1.1
3,209,321 - -0.5
3,209,322 + -0.4
3,209,323 - -0.3
3,209,323 - -0.1
3,209,323 - +0.2

Or see this region's nucleotide sequence