Experiment: m.b. Cobalt chloride 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03580 and CA264_03585 are separated by 421 nucleotides CA264_03585 and CA264_03590 are separated by 184 nucleotides CA264_03590 and CA264_03595 are separated by 333 nucleotides
CA264_03580: CA264_03580 - ATP-dependent helicase HrpB, at 832,856 to 835,303
_03580
CA264_03585: CA264_03585 - hypothetical protein, at 835,725 to 836,015
_03585
CA264_03590: CA264_03590 - hypothetical protein, at 836,200 to 836,601
_03590
CA264_03595: CA264_03595 - sodium:alanine symporter, at 836,935 to 838,389
_03595
Position (kb)
835
836
837 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 834.738 kb on + strand, within CA264_03580 at 834.739 kb on - strand, within CA264_03580 at 834.760 kb on + strand, within CA264_03580 at 834.836 kb on - strand, within CA264_03580 at 835.034 kb on - strand, within CA264_03580 at 835.034 kb on - strand, within CA264_03580 at 835.058 kb on - strand, within CA264_03580 at 835.058 kb on - strand, within CA264_03580 at 835.060 kb on - strand at 835.070 kb on + strand at 835.147 kb on - strand at 835.168 kb on - strand at 835.301 kb on + strand at 835.301 kb on + strand at 835.301 kb on + strand at 835.301 kb on + strand at 835.302 kb on - strand at 835.368 kb on - strand at 835.375 kb on + strand at 835.375 kb on + strand at 835.375 kb on + strand at 835.376 kb on - strand at 835.376 kb on - strand at 835.376 kb on - strand at 835.376 kb on - strand at 835.387 kb on - strand at 835.387 kb on - strand at 835.393 kb on - strand at 835.427 kb on - strand at 835.448 kb on - strand at 835.535 kb on - strand at 835.535 kb on - strand at 835.559 kb on - strand at 835.690 kb on - strand at 835.781 kb on - strand, within CA264_03585 at 835.820 kb on + strand, within CA264_03585 at 835.916 kb on + strand, within CA264_03585 at 835.916 kb on + strand, within CA264_03585 at 835.917 kb on - strand, within CA264_03585 at 835.917 kb on - strand, within CA264_03585 at 836.007 kb on - strand at 836.096 kb on + strand at 836.097 kb on - strand at 836.098 kb on + strand at 836.103 kb on - strand at 836.121 kb on + strand at 836.125 kb on + strand at 836.125 kb on + strand at 836.126 kb on - strand at 836.130 kb on + strand at 836.131 kb on - strand at 836.163 kb on - strand at 836.163 kb on - strand at 836.163 kb on - strand at 836.201 kb on + strand at 836.202 kb on - strand at 836.202 kb on - strand at 836.206 kb on - strand at 836.327 kb on - strand, within CA264_03590 at 836.358 kb on + strand, within CA264_03590 at 836.379 kb on - strand, within CA264_03590 at 836.421 kb on + strand, within CA264_03590 at 836.594 kb on + strand at 836.595 kb on - strand at 836.604 kb on - strand at 836.604 kb on - strand at 836.604 kb on - strand at 836.612 kb on - strand at 836.620 kb on + strand at 836.630 kb on + strand at 836.630 kb on + strand at 836.630 kb on + strand at 836.631 kb on - strand at 836.631 kb on - strand at 836.631 kb on - strand at 836.631 kb on - strand at 836.631 kb on - strand at 836.631 kb on - strand at 836.631 kb on - strand at 836.660 kb on + strand at 836.661 kb on - strand at 836.669 kb on - strand at 836.669 kb on - strand at 836.674 kb on - strand at 836.726 kb on + strand at 836.727 kb on - strand at 836.727 kb on - strand at 836.727 kb on - strand at 836.729 kb on + strand at 836.729 kb on + strand at 836.730 kb on - strand at 836.730 kb on - strand at 836.771 kb on + strand at 836.771 kb on + strand at 836.771 kb on + strand at 836.771 kb on + strand at 836.771 kb on + strand at 836.771 kb on + strand at 836.772 kb on - strand at 836.772 kb on - strand at 836.772 kb on - strand at 836.772 kb on - strand at 836.772 kb on - strand at 836.809 kb on - strand at 836.827 kb on - strand at 836.936 kb on + strand at 836.947 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM remove 834,738 + CA264_03580 0.77 +0.1 834,739 - CA264_03580 0.77 -0.2 834,760 + CA264_03580 0.78 -0.3 834,836 - CA264_03580 0.81 -0.3 835,034 - CA264_03580 0.89 -0.1 835,034 - CA264_03580 0.89 +0.9 835,058 - CA264_03580 0.90 +0.1 835,058 - CA264_03580 0.90 +1.3 835,060 - -0.2 835,070 + +0.4 835,147 - +0.6 835,168 - -0.7 835,301 + +1.2 835,301 + +0.4 835,301 + -0.3 835,301 + +0.4 835,302 - +0.2 835,368 - +0.2 835,375 + +0.6 835,375 + -0.4 835,375 + -1.8 835,376 - +0.6 835,376 - -0.1 835,376 - -0.4 835,376 - +0.6 835,387 - -0.4 835,387 - +0.2 835,393 - -1.6 835,427 - +0.2 835,448 - -0.1 835,535 - -0.3 835,535 - -0.3 835,559 - -0.4 835,690 - -0.1 835,781 - CA264_03585 0.19 -1.5 835,820 + CA264_03585 0.33 +0.0 835,916 + CA264_03585 0.66 -1.2 835,916 + CA264_03585 0.66 -0.2 835,917 - CA264_03585 0.66 -0.0 835,917 - CA264_03585 0.66 -0.2 836,007 - +0.4 836,096 + +0.9 836,097 - +1.0 836,098 + -1.6 836,103 - -0.9 836,121 + +0.5 836,125 + +2.0 836,125 + -0.1 836,126 - +0.3 836,130 + -0.8 836,131 - -0.3 836,163 - +0.9 836,163 - -0.1 836,163 - -0.4 836,201 + -2.2 836,202 - -0.1 836,202 - -0.4 836,206 - -0.2 836,327 - CA264_03590 0.32 +0.8 836,358 + CA264_03590 0.39 -0.1 836,379 - CA264_03590 0.45 +0.7 836,421 + CA264_03590 0.55 -0.2 836,594 + -0.5 836,595 - +0.0 836,604 - +0.1 836,604 - -0.2 836,604 - -0.3 836,612 - -0.9 836,620 + +0.2 836,630 + +0.0 836,630 + -0.5 836,630 + -0.1 836,631 - -0.7 836,631 - +0.9 836,631 - -0.5 836,631 - -0.4 836,631 - +0.2 836,631 - +0.5 836,631 - +0.3 836,660 + +0.0 836,661 - +0.6 836,669 - -0.6 836,669 - -0.0 836,674 - +0.1 836,726 + -0.0 836,727 - -0.6 836,727 - -0.8 836,727 - +0.3 836,729 + -2.1 836,729 + -0.3 836,730 - +0.1 836,730 - +0.8 836,771 + -0.3 836,771 + -0.7 836,771 + +0.6 836,771 + +0.3 836,771 + -0.7 836,771 + -0.3 836,772 - -0.1 836,772 - +0.1 836,772 - +0.7 836,772 - +0.0 836,772 - -0.2 836,809 - +0.2 836,827 - +0.3 836,936 + -0.3 836,947 + -0.2
Or see this region's nucleotide sequence