Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02325

Experiment: m.b. Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02320 and CA264_02325 are separated by 219 nucleotidesCA264_02325 and CA264_02330 are separated by 288 nucleotides CA264_02320: CA264_02320 - curli production assembly/transport component CsgG, at 534,682 to 536,088 _02320 CA264_02325: CA264_02325 - hypothetical protein, at 536,308 to 537,714 _02325 CA264_02330: CA264_02330 - hypothetical protein, at 538,003 to 539,208 _02330 Position (kb) 536 537 538Strain fitness (log2 ratio) -2 -1 0 1 2at 535.519 kb on + strand, within CA264_02320at 535.556 kb on + strand, within CA264_02320at 535.557 kb on - strand, within CA264_02320at 535.621 kb on + strand, within CA264_02320at 535.625 kb on - strand, within CA264_02320at 535.660 kb on - strand, within CA264_02320at 535.683 kb on - strand, within CA264_02320at 535.697 kb on - strand, within CA264_02320at 535.764 kb on + strand, within CA264_02320at 535.765 kb on - strand, within CA264_02320at 535.765 kb on - strand, within CA264_02320at 535.768 kb on + strand, within CA264_02320at 535.789 kb on + strand, within CA264_02320at 535.790 kb on - strand, within CA264_02320at 535.790 kb on - strand, within CA264_02320at 535.790 kb on - strand, within CA264_02320at 535.808 kb on + strand, within CA264_02320at 535.808 kb on + strand, within CA264_02320at 535.809 kb on - strand, within CA264_02320at 535.910 kb on - strand, within CA264_02320at 535.955 kb on + strandat 535.955 kb on + strandat 535.956 kb on - strandat 535.985 kb on - strandat 536.023 kb on - strandat 536.038 kb on + strandat 536.069 kb on - strandat 536.069 kb on - strandat 536.096 kb on - strandat 536.109 kb on + strandat 536.109 kb on + strandat 536.155 kb on - strandat 536.261 kb on + strandat 536.261 kb on + strandat 536.272 kb on + strandat 536.272 kb on + strandat 536.283 kb on - strandat 536.302 kb on - strandat 536.305 kb on - strandat 536.321 kb on + strandat 536.321 kb on + strandat 536.326 kb on + strandat 536.326 kb on + strandat 536.326 kb on + strandat 536.327 kb on - strandat 536.511 kb on + strand, within CA264_02325at 536.535 kb on + strand, within CA264_02325at 536.535 kb on + strand, within CA264_02325at 536.535 kb on + strand, within CA264_02325at 536.536 kb on - strand, within CA264_02325at 536.536 kb on - strand, within CA264_02325at 536.538 kb on + strand, within CA264_02325at 536.601 kb on + strand, within CA264_02325at 536.601 kb on + strand, within CA264_02325at 536.656 kb on - strand, within CA264_02325at 536.793 kb on + strand, within CA264_02325at 536.799 kb on + strand, within CA264_02325at 536.879 kb on + strand, within CA264_02325at 536.879 kb on + strand, within CA264_02325at 536.880 kb on - strand, within CA264_02325at 536.949 kb on - strand, within CA264_02325at 536.949 kb on - strand, within CA264_02325at 536.949 kb on - strand, within CA264_02325at 536.966 kb on + strand, within CA264_02325at 536.966 kb on + strand, within CA264_02325at 537.043 kb on + strand, within CA264_02325at 537.044 kb on - strand, within CA264_02325at 537.046 kb on - strand, within CA264_02325at 537.188 kb on - strand, within CA264_02325at 537.188 kb on - strand, within CA264_02325at 537.188 kb on - strand, within CA264_02325at 537.278 kb on - strand, within CA264_02325at 537.384 kb on + strand, within CA264_02325at 537.415 kb on + strand, within CA264_02325at 537.421 kb on - strand, within CA264_02325at 537.424 kb on + strand, within CA264_02325at 537.424 kb on + strand, within CA264_02325at 537.499 kb on + strand, within CA264_02325at 537.499 kb on + strand, within CA264_02325at 537.499 kb on + strand, within CA264_02325at 537.500 kb on - strand, within CA264_02325at 537.500 kb on - strand, within CA264_02325at 537.500 kb on - strand, within CA264_02325at 537.500 kb on - strand, within CA264_02325at 537.567 kb on + strand, within CA264_02325at 537.568 kb on - strand, within CA264_02325at 537.568 kb on - strand, within CA264_02325at 537.634 kb on - strandat 537.712 kb on + strandat 537.878 kb on - strandat 537.982 kb on + strandat 537.990 kb on + strandat 538.116 kb on + strandat 538.117 kb on - strandat 538.128 kb on + strand, within CA264_02330at 538.129 kb on - strand, within CA264_02330at 538.131 kb on + strand, within CA264_02330at 538.131 kb on + strand, within CA264_02330at 538.132 kb on - strand, within CA264_02330at 538.198 kb on - strand, within CA264_02330at 538.203 kb on + strand, within CA264_02330at 538.204 kb on - strand, within CA264_02330at 538.234 kb on + strand, within CA264_02330at 538.234 kb on + strand, within CA264_02330at 538.234 kb on + strand, within CA264_02330at 538.237 kb on - strand, within CA264_02330at 538.237 kb on - strand, within CA264_02330at 538.237 kb on - strand, within CA264_02330at 538.238 kb on + strand, within CA264_02330at 538.239 kb on - strand, within CA264_02330at 538.239 kb on - strand, within CA264_02330at 538.239 kb on - strand, within CA264_02330at 538.306 kb on - strand, within CA264_02330at 538.307 kb on + strand, within CA264_02330at 538.308 kb on - strand, within CA264_02330at 538.413 kb on - strand, within CA264_02330at 538.413 kb on - strand, within CA264_02330at 538.432 kb on - strand, within CA264_02330at 538.474 kb on + strand, within CA264_02330at 538.482 kb on - strand, within CA264_02330at 538.504 kb on + strand, within CA264_02330at 538.505 kb on - strand, within CA264_02330at 538.505 kb on - strand, within CA264_02330at 538.544 kb on - strand, within CA264_02330at 538.567 kb on + strand, within CA264_02330at 538.567 kb on + strand, within CA264_02330at 538.568 kb on - strand, within CA264_02330at 538.615 kb on - strand, within CA264_02330at 538.627 kb on - strand, within CA264_02330

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
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535,519 + CA264_02320 0.59 -0.9
535,556 + CA264_02320 0.62 +0.6
535,557 - CA264_02320 0.62 +0.1
535,621 + CA264_02320 0.67 -0.4
535,625 - CA264_02320 0.67 +1.2
535,660 - CA264_02320 0.70 -0.2
535,683 - CA264_02320 0.71 +1.4
535,697 - CA264_02320 0.72 -0.3
535,764 + CA264_02320 0.77 -0.1
535,765 - CA264_02320 0.77 +0.1
535,765 - CA264_02320 0.77 +0.6
535,768 + CA264_02320 0.77 +0.4
535,789 + CA264_02320 0.79 -0.6
535,790 - CA264_02320 0.79 +0.4
535,790 - CA264_02320 0.79 -0.1
535,790 - CA264_02320 0.79 -0.7
535,808 + CA264_02320 0.80 -0.4
535,808 + CA264_02320 0.80 +0.6
535,809 - CA264_02320 0.80 -0.6
535,910 - CA264_02320 0.87 +1.8
535,955 + -0.9
535,955 + -0.9
535,956 - +1.5
535,985 - -0.0
536,023 - -0.2
536,038 + +0.9
536,069 - -0.1
536,069 - -1.1
536,096 - +0.6
536,109 + +1.1
536,109 + -0.5
536,155 - -0.3
536,261 + +0.5
536,261 + -2.0
536,272 + +0.8
536,272 + +0.0
536,283 - +0.2
536,302 - +0.1
536,305 - -0.0
536,321 + -0.5
536,321 + +0.6
536,326 + +0.2
536,326 + +0.3
536,326 + -0.4
536,327 - -0.2
536,511 + CA264_02325 0.14 +1.2
536,535 + CA264_02325 0.16 -0.6
536,535 + CA264_02325 0.16 -0.7
536,535 + CA264_02325 0.16 -0.8
536,536 - CA264_02325 0.16 -0.1
536,536 - CA264_02325 0.16 -0.2
536,538 + CA264_02325 0.16 -0.5
536,601 + CA264_02325 0.21 +0.1
536,601 + CA264_02325 0.21 +0.3
536,656 - CA264_02325 0.25 -0.1
536,793 + CA264_02325 0.34 +0.2
536,799 + CA264_02325 0.35 -2.0
536,879 + CA264_02325 0.41 +0.7
536,879 + CA264_02325 0.41 +0.1
536,880 - CA264_02325 0.41 -0.6
536,949 - CA264_02325 0.46 +1.1
536,949 - CA264_02325 0.46 -0.9
536,949 - CA264_02325 0.46 -0.3
536,966 + CA264_02325 0.47 +0.2
536,966 + CA264_02325 0.47 -0.6
537,043 + CA264_02325 0.52 -0.6
537,044 - CA264_02325 0.52 -0.1
537,046 - CA264_02325 0.52 -0.2
537,188 - CA264_02325 0.63 +1.2
537,188 - CA264_02325 0.63 -1.3
537,188 - CA264_02325 0.63 -0.2
537,278 - CA264_02325 0.69 -0.1
537,384 + CA264_02325 0.76 +0.4
537,415 + CA264_02325 0.79 -0.2
537,421 - CA264_02325 0.79 -1.0
537,424 + CA264_02325 0.79 -0.8
537,424 + CA264_02325 0.79 +0.6
537,499 + CA264_02325 0.85 +0.3
537,499 + CA264_02325 0.85 -1.8
537,499 + CA264_02325 0.85 -0.2
537,500 - CA264_02325 0.85 -0.3
537,500 - CA264_02325 0.85 +0.4
537,500 - CA264_02325 0.85 +0.1
537,500 - CA264_02325 0.85 -0.2
537,567 + CA264_02325 0.89 -0.2
537,568 - CA264_02325 0.90 -0.6
537,568 - CA264_02325 0.90 -0.3
537,634 - -0.2
537,712 + +0.1
537,878 - +0.1
537,982 + +0.2
537,990 + +1.1
538,116 + -0.0
538,117 - -0.0
538,128 + CA264_02330 0.10 +0.1
538,129 - CA264_02330 0.10 +0.8
538,131 + CA264_02330 0.11 +0.9
538,131 + CA264_02330 0.11 -1.0
538,132 - CA264_02330 0.11 -1.0
538,198 - CA264_02330 0.16 -0.1
538,203 + CA264_02330 0.17 +0.2
538,204 - CA264_02330 0.17 +0.4
538,234 + CA264_02330 0.19 -1.0
538,234 + CA264_02330 0.19 -0.3
538,234 + CA264_02330 0.19 -0.2
538,237 - CA264_02330 0.19 +0.1
538,237 - CA264_02330 0.19 +0.0
538,237 - CA264_02330 0.19 +1.7
538,238 + CA264_02330 0.19 +0.6
538,239 - CA264_02330 0.20 +0.1
538,239 - CA264_02330 0.20 +0.6
538,239 - CA264_02330 0.20 -0.0
538,306 - CA264_02330 0.25 -1.4
538,307 + CA264_02330 0.25 -0.5
538,308 - CA264_02330 0.25 -0.2
538,413 - CA264_02330 0.34 +0.5
538,413 - CA264_02330 0.34 +0.3
538,432 - CA264_02330 0.36 +0.9
538,474 + CA264_02330 0.39 +2.4
538,482 - CA264_02330 0.40 +0.4
538,504 + CA264_02330 0.42 -0.3
538,505 - CA264_02330 0.42 +0.0
538,505 - CA264_02330 0.42 +0.0
538,544 - CA264_02330 0.45 +0.9
538,567 + CA264_02330 0.47 -0.2
538,567 + CA264_02330 0.47 -0.5
538,568 - CA264_02330 0.47 -0.2
538,615 - CA264_02330 0.51 -0.1
538,627 - CA264_02330 0.52 -0.5

Or see this region's nucleotide sequence