Experiment: 5-Keto-D-Gluconic Acid potassium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20015 and ABIE40_RS20020 are separated by 6 nucleotides ABIE40_RS20020 and ABIE40_RS20025 are separated by 321 nucleotides
ABIE40_RS20015: ABIE40_RS20015 - CaiB/BaiF CoA-transferase family protein, at 102,657 to 103,817
_RS20015
ABIE40_RS20020: ABIE40_RS20020 - MaoC family dehydratase, at 103,824 to 104,378
_RS20020
ABIE40_RS20025: ABIE40_RS20025 - alpha-hydroxy acid oxidase, at 104,700 to 105,845
_RS20025
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.872 kb on + strand, within ABIE40_RS20015 at 103.057 kb on + strand, within ABIE40_RS20015 at 103.076 kb on - strand, within ABIE40_RS20015 at 103.099 kb on + strand, within ABIE40_RS20015 at 103.099 kb on + strand, within ABIE40_RS20015 at 103.099 kb on + strand, within ABIE40_RS20015 at 103.099 kb on + strand, within ABIE40_RS20015 at 103.099 kb on + strand, within ABIE40_RS20015 at 103.100 kb on - strand, within ABIE40_RS20015 at 103.100 kb on - strand, within ABIE40_RS20015 at 103.292 kb on + strand, within ABIE40_RS20015 at 103.292 kb on + strand, within ABIE40_RS20015 at 103.439 kb on - strand, within ABIE40_RS20015 at 103.474 kb on + strand, within ABIE40_RS20015 at 103.475 kb on - strand, within ABIE40_RS20015 at 103.660 kb on + strand, within ABIE40_RS20015 at 103.661 kb on - strand, within ABIE40_RS20015 at 103.744 kb on + strand at 103.744 kb on + strand at 103.745 kb on - strand at 103.825 kb on + strand at 103.825 kb on + strand at 103.825 kb on + strand at 103.826 kb on - strand at 103.864 kb on + strand at 103.864 kb on + strand at 103.925 kb on + strand, within ABIE40_RS20020 at 103.927 kb on + strand, within ABIE40_RS20020 at 103.927 kb on + strand, within ABIE40_RS20020 at 103.928 kb on - strand, within ABIE40_RS20020 at 103.928 kb on - strand, within ABIE40_RS20020 at 103.994 kb on - strand, within ABIE40_RS20020 at 104.170 kb on + strand, within ABIE40_RS20020 at 104.171 kb on - strand, within ABIE40_RS20020 at 104.171 kb on - strand, within ABIE40_RS20020 at 104.171 kb on - strand, within ABIE40_RS20020 at 104.272 kb on + strand, within ABIE40_RS20020 at 104.272 kb on + strand, within ABIE40_RS20020 at 104.272 kb on + strand, within ABIE40_RS20020 at 104.272 kb on + strand, within ABIE40_RS20020 at 104.272 kb on + strand, within ABIE40_RS20020 at 104.272 kb on + strand, within ABIE40_RS20020 at 104.273 kb on - strand, within ABIE40_RS20020 at 104.273 kb on - strand, within ABIE40_RS20020 at 104.273 kb on - strand, within ABIE40_RS20020 at 104.273 kb on - strand, within ABIE40_RS20020 at 104.450 kb on - strand at 104.469 kb on - strand at 104.554 kb on + strand at 104.554 kb on + strand at 104.554 kb on + strand at 104.554 kb on + strand at 104.554 kb on + strand at 104.555 kb on - strand at 104.555 kb on - strand at 104.555 kb on - strand at 104.555 kb on - strand at 104.556 kb on + strand at 104.556 kb on + strand at 104.556 kb on + strand at 104.556 kb on + strand at 104.556 kb on + strand at 104.557 kb on - strand at 104.577 kb on + strand at 104.577 kb on + strand at 104.577 kb on + strand at 104.578 kb on - strand at 104.720 kb on + strand at 104.721 kb on - strand at 104.778 kb on + strand at 104.779 kb on - strand at 104.779 kb on - strand at 104.779 kb on - strand at 104.779 kb on - strand at 104.779 kb on - strand at 104.812 kb on - strand at 104.812 kb on - strand at 104.928 kb on + strand, within ABIE40_RS20025 at 104.929 kb on - strand, within ABIE40_RS20025 at 104.929 kb on - strand, within ABIE40_RS20025 at 104.929 kb on - strand, within ABIE40_RS20025 at 105.084 kb on + strand, within ABIE40_RS20025 at 105.085 kb on - strand, within ABIE40_RS20025 at 105.093 kb on + strand, within ABIE40_RS20025 at 105.094 kb on - strand, within ABIE40_RS20025 at 105.375 kb on + strand, within ABIE40_RS20025 at 105.375 kb on + strand, within ABIE40_RS20025
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Keto-D-Gluconic Acid potassium salt (C) remove 102,872 + ABIE40_RS20015 0.19 +0.1 103,057 + ABIE40_RS20015 0.34 +1.0 103,076 - ABIE40_RS20015 0.36 -0.0 103,099 + ABIE40_RS20015 0.38 +1.5 103,099 + ABIE40_RS20015 0.38 -0.2 103,099 + ABIE40_RS20015 0.38 +1.0 103,099 + ABIE40_RS20015 0.38 -0.4 103,099 + ABIE40_RS20015 0.38 -0.4 103,100 - ABIE40_RS20015 0.38 +1.3 103,100 - ABIE40_RS20015 0.38 +0.3 103,292 + ABIE40_RS20015 0.55 -0.1 103,292 + ABIE40_RS20015 0.55 +0.4 103,439 - ABIE40_RS20015 0.67 +0.6 103,474 + ABIE40_RS20015 0.70 -0.2 103,475 - ABIE40_RS20015 0.70 -0.6 103,660 + ABIE40_RS20015 0.86 -0.3 103,661 - ABIE40_RS20015 0.86 -0.4 103,744 + +1.6 103,744 + +1.5 103,745 - -2.7 103,825 + -1.9 103,825 + +0.4 103,825 + +0.8 103,826 - -0.3 103,864 + +1.4 103,864 + -1.1 103,925 + ABIE40_RS20020 0.18 -0.2 103,927 + ABIE40_RS20020 0.19 -0.3 103,927 + ABIE40_RS20020 0.19 +0.5 103,928 - ABIE40_RS20020 0.19 +2.2 103,928 - ABIE40_RS20020 0.19 -1.5 103,994 - ABIE40_RS20020 0.31 -0.5 104,170 + ABIE40_RS20020 0.62 -0.6 104,171 - ABIE40_RS20020 0.63 -1.0 104,171 - ABIE40_RS20020 0.63 +0.2 104,171 - ABIE40_RS20020 0.63 -0.6 104,272 + ABIE40_RS20020 0.81 -1.7 104,272 + ABIE40_RS20020 0.81 +0.8 104,272 + ABIE40_RS20020 0.81 +0.1 104,272 + ABIE40_RS20020 0.81 -0.2 104,272 + ABIE40_RS20020 0.81 +0.2 104,272 + ABIE40_RS20020 0.81 +0.7 104,273 - ABIE40_RS20020 0.81 -0.3 104,273 - ABIE40_RS20020 0.81 +0.4 104,273 - ABIE40_RS20020 0.81 +0.3 104,273 - ABIE40_RS20020 0.81 -0.7 104,450 - -0.9 104,469 - +2.5 104,554 + -2.0 104,554 + +0.1 104,554 + -0.6 104,554 + -0.8 104,554 + +0.6 104,555 - +0.4 104,555 - +2.2 104,555 - -0.2 104,555 - -0.0 104,556 + +0.2 104,556 + +0.2 104,556 + -0.9 104,556 + +1.7 104,556 + -1.5 104,557 - -1.3 104,577 + -1.3 104,577 + -0.0 104,577 + +0.8 104,578 - -0.1 104,720 + -0.4 104,721 - -1.7 104,778 + -1.2 104,779 - -0.0 104,779 - +0.0 104,779 - -0.0 104,779 - -0.1 104,779 - +0.6 104,812 - +1.9 104,812 - +0.5 104,928 + ABIE40_RS20025 0.20 -0.3 104,929 - ABIE40_RS20025 0.20 +0.8 104,929 - ABIE40_RS20025 0.20 -1.3 104,929 - ABIE40_RS20025 0.20 +0.3 105,084 + ABIE40_RS20025 0.34 -0.0 105,085 - ABIE40_RS20025 0.34 +0.3 105,093 + ABIE40_RS20025 0.34 +0.3 105,094 - ABIE40_RS20025 0.34 -1.0 105,375 + ABIE40_RS20025 0.59 +0.2 105,375 + ABIE40_RS20025 0.59 +0.6
Or see this region's nucleotide sequence