Experiment: 5-Keto-D-Gluconic Acid potassium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03585 and ABIE40_RS03590 are separated by 211 nucleotides ABIE40_RS03590 and ABIE40_RS03595 overlap by 4 nucleotides ABIE40_RS03595 and ABIE40_RS03600 are separated by 3 nucleotides
ABIE40_RS03585: ABIE40_RS03585 - L,D-transpeptidase, at 712,210 to 712,965
_RS03585
ABIE40_RS03590: ABIE40_RS03590 - DNA-3-methyladenine glycosylase I, at 713,177 to 713,806
_RS03590
ABIE40_RS03595: ABIE40_RS03595 - hypothetical protein, at 713,803 to 714,306
_RS03595
ABIE40_RS03600: ABIE40_RS03600 - HAD family hydrolase, at 714,310 to 714,999
_RS03600
Position (kb) 713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 712.211 kb on + strand at 712.211 kb on + strand at 712.212 kb on - strand at 712.212 kb on - strand at 712.212 kb on - strand at 712.250 kb on + strand at 712.251 kb on - strand at 712.361 kb on + strand, within ABIE40_RS03585 at 712.361 kb on + strand, within ABIE40_RS03585 at 712.361 kb on + strand, within ABIE40_RS03585 at 712.361 kb on + strand, within ABIE40_RS03585 at 712.362 kb on - strand, within ABIE40_RS03585 at 712.362 kb on - strand, within ABIE40_RS03585 at 712.362 kb on - strand, within ABIE40_RS03585 at 712.362 kb on - strand, within ABIE40_RS03585 at 712.362 kb on - strand, within ABIE40_RS03585 at 712.362 kb on - strand, within ABIE40_RS03585 at 712.362 kb on - strand, within ABIE40_RS03585 at 712.362 kb on - strand, within ABIE40_RS03585 at 712.418 kb on + strand, within ABIE40_RS03585 at 712.418 kb on + strand, within ABIE40_RS03585 at 712.419 kb on - strand, within ABIE40_RS03585 at 712.419 kb on - strand, within ABIE40_RS03585 at 712.419 kb on - strand, within ABIE40_RS03585 at 712.419 kb on - strand, within ABIE40_RS03585 at 712.544 kb on + strand, within ABIE40_RS03585 at 712.544 kb on + strand, within ABIE40_RS03585 at 712.611 kb on + strand, within ABIE40_RS03585 at 712.634 kb on + strand, within ABIE40_RS03585 at 712.635 kb on - strand, within ABIE40_RS03585 at 712.635 kb on - strand, within ABIE40_RS03585 at 712.757 kb on + strand, within ABIE40_RS03585 at 712.802 kb on + strand, within ABIE40_RS03585 at 712.802 kb on + strand, within ABIE40_RS03585 at 712.980 kb on + strand at 713.054 kb on + strand at 713.106 kb on + strand at 713.106 kb on + strand at 713.107 kb on - strand at 713.107 kb on - strand at 713.109 kb on + strand at 713.109 kb on + strand at 713.110 kb on - strand at 713.133 kb on + strand at 713.133 kb on + strand at 713.134 kb on - strand at 713.140 kb on + strand at 713.140 kb on + strand at 713.141 kb on - strand at 713.141 kb on - strand at 713.160 kb on - strand at 713.249 kb on + strand, within ABIE40_RS03590 at 713.249 kb on + strand, within ABIE40_RS03590 at 713.250 kb on - strand, within ABIE40_RS03590 at 713.296 kb on + strand, within ABIE40_RS03590 at 713.297 kb on - strand, within ABIE40_RS03590 at 713.556 kb on - strand, within ABIE40_RS03590 at 713.556 kb on - strand, within ABIE40_RS03590 at 713.612 kb on + strand, within ABIE40_RS03590 at 713.612 kb on + strand, within ABIE40_RS03590 at 713.613 kb on - strand, within ABIE40_RS03590 at 713.613 kb on - strand, within ABIE40_RS03590 at 713.613 kb on - strand, within ABIE40_RS03590 at 713.613 kb on - strand, within ABIE40_RS03590 at 713.613 kb on - strand, within ABIE40_RS03590 at 713.613 kb on - strand, within ABIE40_RS03590 at 713.705 kb on + strand, within ABIE40_RS03590 at 713.705 kb on + strand, within ABIE40_RS03590 at 713.705 kb on + strand, within ABIE40_RS03590 at 713.705 kb on + strand, within ABIE40_RS03590 at 713.706 kb on - strand, within ABIE40_RS03590 at 713.706 kb on - strand, within ABIE40_RS03590 at 713.706 kb on - strand, within ABIE40_RS03590 at 713.706 kb on - strand, within ABIE40_RS03590 at 713.706 kb on - strand, within ABIE40_RS03590 at 713.734 kb on + strand, within ABIE40_RS03590 at 713.735 kb on - strand, within ABIE40_RS03590 at 713.735 kb on - strand, within ABIE40_RS03590 at 713.735 kb on - strand, within ABIE40_RS03590 at 713.796 kb on + strand at 713.796 kb on + strand at 713.796 kb on + strand at 713.796 kb on + strand at 713.796 kb on + strand at 713.796 kb on + strand at 713.796 kb on + strand at 713.796 kb on + strand at 713.797 kb on - strand at 713.797 kb on - strand at 713.797 kb on - strand at 714.109 kb on - strand, within ABIE40_RS03595 at 714.127 kb on - strand, within ABIE40_RS03595 at 714.127 kb on - strand, within ABIE40_RS03595 at 714.127 kb on - strand, within ABIE40_RS03595 at 714.127 kb on - strand, within ABIE40_RS03595 at 714.148 kb on + strand, within ABIE40_RS03595 at 714.148 kb on + strand, within ABIE40_RS03595 at 714.149 kb on - strand, within ABIE40_RS03595 at 714.149 kb on - strand, within ABIE40_RS03595 at 714.149 kb on - strand, within ABIE40_RS03595 at 714.151 kb on + strand, within ABIE40_RS03595 at 714.151 kb on + strand, within ABIE40_RS03595 at 714.190 kb on + strand, within ABIE40_RS03595 at 714.191 kb on - strand, within ABIE40_RS03595 at 714.192 kb on + strand, within ABIE40_RS03595 at 714.192 kb on + strand, within ABIE40_RS03595 at 714.192 kb on + strand, within ABIE40_RS03595 at 714.192 kb on + strand, within ABIE40_RS03595 at 714.304 kb on + strand at 714.304 kb on + strand at 714.305 kb on - strand at 714.305 kb on - strand at 714.305 kb on - strand at 714.305 kb on - strand at 714.311 kb on + strand at 714.312 kb on - strand at 714.437 kb on + strand, within ABIE40_RS03600 at 714.438 kb on - strand, within ABIE40_RS03600 at 714.540 kb on - strand, within ABIE40_RS03600 at 714.659 kb on + strand, within ABIE40_RS03600 at 714.659 kb on + strand, within ABIE40_RS03600 at 714.659 kb on + strand, within ABIE40_RS03600 at 714.660 kb on - strand, within ABIE40_RS03600 at 714.660 kb on - strand, within ABIE40_RS03600 at 714.660 kb on - strand, within ABIE40_RS03600 at 714.660 kb on - strand, within ABIE40_RS03600
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Keto-D-Gluconic Acid potassium salt (C) remove 712,211 + -0.1 712,211 + +0.5 712,212 - -1.0 712,212 - +1.1 712,212 - -0.4 712,250 + -0.7 712,251 - +1.3 712,361 + ABIE40_RS03585 0.20 +0.6 712,361 + ABIE40_RS03585 0.20 -0.5 712,361 + ABIE40_RS03585 0.20 -0.5 712,361 + ABIE40_RS03585 0.20 -0.4 712,362 - ABIE40_RS03585 0.20 -1.7 712,362 - ABIE40_RS03585 0.20 +1.6 712,362 - ABIE40_RS03585 0.20 -0.1 712,362 - ABIE40_RS03585 0.20 +0.6 712,362 - ABIE40_RS03585 0.20 +0.2 712,362 - ABIE40_RS03585 0.20 +0.3 712,362 - ABIE40_RS03585 0.20 -0.9 712,362 - ABIE40_RS03585 0.20 -1.7 712,418 + ABIE40_RS03585 0.28 +0.0 712,418 + ABIE40_RS03585 0.28 -0.6 712,419 - ABIE40_RS03585 0.28 +0.8 712,419 - ABIE40_RS03585 0.28 -0.2 712,419 - ABIE40_RS03585 0.28 -0.1 712,419 - ABIE40_RS03585 0.28 -0.8 712,544 + ABIE40_RS03585 0.44 -0.1 712,544 + ABIE40_RS03585 0.44 -1.6 712,611 + ABIE40_RS03585 0.53 +0.3 712,634 + ABIE40_RS03585 0.56 -0.3 712,635 - ABIE40_RS03585 0.56 +1.7 712,635 - ABIE40_RS03585 0.56 -0.4 712,757 + ABIE40_RS03585 0.72 -0.2 712,802 + ABIE40_RS03585 0.78 -2.6 712,802 + ABIE40_RS03585 0.78 +1.4 712,980 + -1.3 713,054 + -1.3 713,106 + +0.8 713,106 + +0.4 713,107 - +0.2 713,107 - -0.1 713,109 + -0.1 713,109 + -0.0 713,110 - -0.1 713,133 + +1.9 713,133 + +1.3 713,134 - -0.3 713,140 + +0.2 713,140 + +1.9 713,141 - +1.4 713,141 - -0.3 713,160 - +0.5 713,249 + ABIE40_RS03590 0.11 -0.2 713,249 + ABIE40_RS03590 0.11 +0.4 713,250 - ABIE40_RS03590 0.12 -1.4 713,296 + ABIE40_RS03590 0.19 -2.3 713,297 - ABIE40_RS03590 0.19 -0.5 713,556 - ABIE40_RS03590 0.60 +0.4 713,556 - ABIE40_RS03590 0.60 -0.2 713,612 + ABIE40_RS03590 0.69 -2.5 713,612 + ABIE40_RS03590 0.69 +0.2 713,613 - ABIE40_RS03590 0.69 +0.3 713,613 - ABIE40_RS03590 0.69 +1.4 713,613 - ABIE40_RS03590 0.69 +0.5 713,613 - ABIE40_RS03590 0.69 -0.8 713,613 - ABIE40_RS03590 0.69 -1.3 713,613 - ABIE40_RS03590 0.69 -0.6 713,705 + ABIE40_RS03590 0.84 -0.7 713,705 + ABIE40_RS03590 0.84 -0.4 713,705 + ABIE40_RS03590 0.84 +0.0 713,705 + ABIE40_RS03590 0.84 -1.4 713,706 - ABIE40_RS03590 0.84 -1.6 713,706 - ABIE40_RS03590 0.84 +0.1 713,706 - ABIE40_RS03590 0.84 +1.2 713,706 - ABIE40_RS03590 0.84 -1.0 713,706 - ABIE40_RS03590 0.84 +1.0 713,734 + ABIE40_RS03590 0.88 -1.3 713,735 - ABIE40_RS03590 0.89 -0.3 713,735 - ABIE40_RS03590 0.89 +2.4 713,735 - ABIE40_RS03590 0.89 +0.1 713,796 + +0.8 713,796 + -0.8 713,796 + +0.2 713,796 + +0.1 713,796 + -1.6 713,796 + -0.4 713,796 + +0.9 713,796 + -1.6 713,797 - +0.5 713,797 - +0.5 713,797 - +1.0 714,109 - ABIE40_RS03595 0.61 +0.1 714,127 - ABIE40_RS03595 0.64 +0.3 714,127 - ABIE40_RS03595 0.64 +0.9 714,127 - ABIE40_RS03595 0.64 +0.4 714,127 - ABIE40_RS03595 0.64 +1.0 714,148 + ABIE40_RS03595 0.68 +0.3 714,148 + ABIE40_RS03595 0.68 +0.7 714,149 - ABIE40_RS03595 0.69 +0.7 714,149 - ABIE40_RS03595 0.69 +1.0 714,149 - ABIE40_RS03595 0.69 +0.9 714,151 + ABIE40_RS03595 0.69 +0.5 714,151 + ABIE40_RS03595 0.69 +0.3 714,190 + ABIE40_RS03595 0.77 -0.2 714,191 - ABIE40_RS03595 0.77 +0.3 714,192 + ABIE40_RS03595 0.77 -0.4 714,192 + ABIE40_RS03595 0.77 +1.2 714,192 + ABIE40_RS03595 0.77 +0.7 714,192 + ABIE40_RS03595 0.77 +0.7 714,304 + +0.7 714,304 + -0.6 714,305 - -0.0 714,305 - -3.0 714,305 - -1.2 714,305 - -1.7 714,311 + -0.3 714,312 - -1.0 714,437 + ABIE40_RS03600 0.18 -1.3 714,438 - ABIE40_RS03600 0.19 +0.7 714,540 - ABIE40_RS03600 0.33 +0.4 714,659 + ABIE40_RS03600 0.51 +1.6 714,659 + ABIE40_RS03600 0.51 +1.1 714,659 + ABIE40_RS03600 0.51 +0.6 714,660 - ABIE40_RS03600 0.51 -1.3 714,660 - ABIE40_RS03600 0.51 +3.9 714,660 - ABIE40_RS03600 0.51 -0.6 714,660 - ABIE40_RS03600 0.51 +0.1
Or see this region's nucleotide sequence