Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28290

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28280 and ABID97_RS28285 are separated by 195 nucleotidesABID97_RS28285 and ABID97_RS28290 are separated by 104 nucleotidesABID97_RS28290 and ABID97_RS28295 are separated by 150 nucleotides ABID97_RS28280: ABID97_RS28280 - hypothetical protein, at 576,186 to 576,740 _RS28280 ABID97_RS28285: ABID97_RS28285 - hypothetical protein, at 576,936 to 577,292 _RS28285 ABID97_RS28290: ABID97_RS28290 - hypothetical protein, at 577,397 to 577,696 _RS28290 ABID97_RS28295: ABID97_RS28295 - tRNA-uridine aminocarboxypropyltransferase, at 577,847 to 578,606 _RS28295 Position (kb) 577 578Strain fitness (log2 ratio) -2 -1 0 1at 576.412 kb on + strand, within ABID97_RS28280at 576.413 kb on - strand, within ABID97_RS28280at 577.000 kb on + strand, within ABID97_RS28285at 577.001 kb on - strand, within ABID97_RS28285at 577.128 kb on + strand, within ABID97_RS28285at 577.220 kb on + strand, within ABID97_RS28285at 577.410 kb on - strandat 577.520 kb on - strand, within ABID97_RS28290at 578.187 kb on + strand, within ABID97_RS28295at 578.188 kb on - strand, within ABID97_RS28295at 578.377 kb on - strand, within ABID97_RS28295at 578.484 kb on + strand, within ABID97_RS28295at 578.509 kb on - strand, within ABID97_RS28295at 578.509 kb on - strand, within ABID97_RS28295

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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576,412 + ABID97_RS28280 0.41 -0.7
576,413 - ABID97_RS28280 0.41 -0.8
577,000 + ABID97_RS28285 0.18 -0.1
577,001 - ABID97_RS28285 0.18 -1.1
577,128 + ABID97_RS28285 0.54 -0.5
577,220 + ABID97_RS28285 0.80 +0.1
577,410 - -0.3
577,520 - ABID97_RS28290 0.41 -1.8
578,187 + ABID97_RS28295 0.45 +0.1
578,188 - ABID97_RS28295 0.45 +0.7
578,377 - ABID97_RS28295 0.70 +0.8
578,484 + ABID97_RS28295 0.84 +0.2
578,509 - ABID97_RS28295 0.87 +1.4
578,509 - ABID97_RS28295 0.87 -0.3

Or see this region's nucleotide sequence