Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27395

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27385 and ABID97_RS27390 are separated by 1 nucleotidesABID97_RS27390 and ABID97_RS27395 are separated by 14 nucleotidesABID97_RS27395 and ABID97_RS27400 are separated by 157 nucleotidesABID97_RS27400 and ABID97_RS27405 are separated by 49 nucleotides ABID97_RS27385: ABID97_RS27385 - biotin-dependent carboxyltransferase family protein, at 394,712 to 395,701 _RS27385 ABID97_RS27390: ABID97_RS27390 - biotin/lipoyl-containing protein, at 395,703 to 396,116 _RS27390 ABID97_RS27395: ABID97_RS27395 - 5-oxoprolinase subunit PxpA, at 396,131 to 396,895 _RS27395 ABID97_RS27400: ABID97_RS27400 - SDR family oxidoreductase, at 397,053 to 397,805 _RS27400 ABID97_RS27405: ABID97_RS27405 - amino acid ABC transporter permease, at 397,855 to 398,556 _RS27405 Position (kb) 396 397Strain fitness (log2 ratio) -1 0 1at 395.317 kb on + strand, within ABID97_RS27385at 396.753 kb on - strand, within ABID97_RS27395at 396.911 kb on + strandat 396.917 kb on - strandat 396.946 kb on - strandat 397.004 kb on - strandat 397.485 kb on + strand, within ABID97_RS27400

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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395,317 + ABID97_RS27385 0.61 +0.1
396,753 - ABID97_RS27395 0.81 -1.5
396,911 + +0.1
396,917 - -0.4
396,946 - -0.4
397,004 - +0.3
397,485 + ABID97_RS27400 0.57 +1.0

Or see this region's nucleotide sequence