Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26760

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS26750 and ABID97_RS26755 are separated by 40 nucleotidesABID97_RS26755 and ABID97_RS26760 are separated by 4 nucleotidesABID97_RS26760 and ABID97_RS26765 are separated by 44 nucleotidesABID97_RS26765 and ABID97_RS26770 are separated by 10 nucleotides ABID97_RS26750: ABID97_RS26750 - urea ABC transporter substrate-binding protein, at 274,127 to 275,320 _RS26750 ABID97_RS26755: ABID97_RS26755 - urea ABC transporter permease subunit UrtB, at 275,361 to 276,263 _RS26755 ABID97_RS26760: ABID97_RS26760 - urea ABC transporter permease subunit UrtC, at 276,268 to 277,314 _RS26760 ABID97_RS26765: ABID97_RS26765 - urea ABC transporter ATP-binding protein UrtD, at 277,359 to 278,115 _RS26765 ABID97_RS26770: ABID97_RS26770 - urea ABC transporter ATP-binding subunit UrtE, at 278,126 to 278,815 _RS26770 Position (kb) 276 277 278Strain fitness (log2 ratio) -1 0 1at 277.028 kb on - strand, within ABID97_RS26760at 277.097 kb on - strand, within ABID97_RS26760

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
277,028 - ABID97_RS26760 0.73 -1.1
277,097 - ABID97_RS26760 0.79 -0.7

Or see this region's nucleotide sequence