Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25545 and ABID97_RS25550 are separated by 135 nucleotides ABID97_RS25550 and ABID97_RS25555 are separated by 26 nucleotides ABID97_RS25555 and ABID97_RS25560 are separated by 38 nucleotides
ABID97_RS25545: ABID97_RS25545 - ABC transporter permease, at 27,799 to 29,838
_RS25545
ABID97_RS25550: ABID97_RS25550 - alpha/beta fold hydrolase, at 29,974 to 31,188
_RS25550
ABID97_RS25555: ABID97_RS25555 - alpha/beta hydrolase, at 31,215 to 32,036
_RS25555
ABID97_RS25560: ABID97_RS25560 - alpha/beta hydrolase, at 32,075 to 33,010
_RS25560
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -2
-1
0
1 at 29.464 kb on + strand, within ABID97_RS25545 at 29.465 kb on - strand, within ABID97_RS25545 at 29.690 kb on - strand at 29.782 kb on + strand at 29.957 kb on + strand at 29.957 kb on + strand at 30.415 kb on + strand, within ABID97_RS25550 at 30.416 kb on - strand, within ABID97_RS25550 at 30.442 kb on + strand, within ABID97_RS25550 at 30.443 kb on - strand, within ABID97_RS25550 at 32.140 kb on + strand at 32.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 29,464 + ABID97_RS25545 0.82 +0.5 29,465 - ABID97_RS25545 0.82 -0.8 29,690 - -0.8 29,782 + -0.6 29,957 + +0.7 29,957 + +0.1 30,415 + ABID97_RS25550 0.36 -1.1 30,416 - ABID97_RS25550 0.36 +0.7 30,442 + ABID97_RS25550 0.39 -0.4 30,443 - ABID97_RS25550 0.39 -1.8 32,140 + +0.7 32,140 + -1.2
Or see this region's nucleotide sequence