Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22055

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22050 and ABID97_RS22055 are separated by 74 nucleotidesABID97_RS22055 and ABID97_RS22060 are separated by 97 nucleotides ABID97_RS22050: ABID97_RS22050 - BMP family ABC transporter substrate-binding protein, at 4,561,739 to 4,562,851 _RS22050 ABID97_RS22055: ABID97_RS22055 - LysR substrate-binding domain-containing protein, at 4,562,926 to 4,563,861 _RS22055 ABID97_RS22060: ABID97_RS22060 - MFS transporter, at 4,563,959 to 4,565,254 _RS22060 Position (kb) 4562 4563 4564Strain fitness (log2 ratio) -2 -1 0 1 2at 4562.046 kb on + strand, within ABID97_RS22050at 4562.047 kb on - strand, within ABID97_RS22050at 4562.047 kb on - strand, within ABID97_RS22050at 4562.047 kb on - strand, within ABID97_RS22050at 4562.049 kb on + strand, within ABID97_RS22050at 4562.050 kb on - strand, within ABID97_RS22050at 4562.050 kb on - strand, within ABID97_RS22050at 4562.118 kb on + strand, within ABID97_RS22050at 4562.424 kb on + strand, within ABID97_RS22050at 4562.424 kb on + strand, within ABID97_RS22050at 4562.425 kb on - strand, within ABID97_RS22050at 4562.425 kb on - strand, within ABID97_RS22050at 4562.425 kb on - strand, within ABID97_RS22050at 4562.466 kb on + strand, within ABID97_RS22050at 4562.467 kb on - strand, within ABID97_RS22050at 4562.467 kb on - strand, within ABID97_RS22050at 4562.532 kb on + strand, within ABID97_RS22050at 4562.724 kb on + strand, within ABID97_RS22050at 4562.862 kb on + strandat 4562.862 kb on + strandat 4562.863 kb on - strandat 4562.863 kb on - strandat 4562.863 kb on - strandat 4562.863 kb on - strandat 4562.928 kb on - strandat 4563.647 kb on + strand, within ABID97_RS22055at 4563.648 kb on - strand, within ABID97_RS22055

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,562,046 + ABID97_RS22050 0.28 -0.0
4,562,047 - ABID97_RS22050 0.28 -1.4
4,562,047 - ABID97_RS22050 0.28 -0.4
4,562,047 - ABID97_RS22050 0.28 +0.1
4,562,049 + ABID97_RS22050 0.28 -0.6
4,562,050 - ABID97_RS22050 0.28 -1.9
4,562,050 - ABID97_RS22050 0.28 +0.3
4,562,118 + ABID97_RS22050 0.34 +0.2
4,562,424 + ABID97_RS22050 0.62 -0.4
4,562,424 + ABID97_RS22050 0.62 +0.3
4,562,425 - ABID97_RS22050 0.62 -0.0
4,562,425 - ABID97_RS22050 0.62 -0.8
4,562,425 - ABID97_RS22050 0.62 +0.8
4,562,466 + ABID97_RS22050 0.65 +0.0
4,562,467 - ABID97_RS22050 0.65 -0.9
4,562,467 - ABID97_RS22050 0.65 +0.2
4,562,532 + ABID97_RS22050 0.71 +0.9
4,562,724 + ABID97_RS22050 0.88 -0.5
4,562,862 + +0.7
4,562,862 + -0.4
4,562,863 - +2.2
4,562,863 - +0.1
4,562,863 - -0.4
4,562,863 - +0.1
4,562,928 - -0.3
4,563,647 + ABID97_RS22055 0.77 +1.6
4,563,648 - ABID97_RS22055 0.77 +0.6

Or see this region's nucleotide sequence