Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20765 and ABID97_RS20770 are separated by 17 nucleotides ABID97_RS20770 and ABID97_RS20775 are separated by 162 nucleotides
ABID97_RS20765: ABID97_RS20765 - Bug family tripartite tricarboxylate transporter substrate binding protein, at 4,289,291 to 4,290,223
_RS20765
ABID97_RS20770: ABID97_RS20770 - sulfatase-like hydrolase/transferase, at 4,290,241 to 4,291,557
_RS20770
ABID97_RS20775: ABID97_RS20775 - phosphoesterase, at 4,291,720 to 4,294,038
_RS20775
Position (kb)
4290
4291
4292 Strain fitness (log2 ratio)
-2
-1
0
1 at 4290.173 kb on + strand at 4290.213 kb on - strand at 4290.287 kb on - strand at 4290.305 kb on - strand at 4290.670 kb on + strand, within ABID97_RS20770 at 4290.829 kb on + strand, within ABID97_RS20770 at 4290.829 kb on + strand, within ABID97_RS20770 at 4291.234 kb on + strand, within ABID97_RS20770 at 4291.382 kb on - strand, within ABID97_RS20770 at 4291.555 kb on + strand at 4291.555 kb on + strand at 4291.555 kb on + strand at 4291.555 kb on + strand at 4291.555 kb on + strand at 4291.556 kb on - strand at 4291.611 kb on + strand at 4291.611 kb on + strand at 4291.611 kb on + strand at 4291.611 kb on + strand at 4291.936 kb on + strand at 4291.939 kb on + strand at 4291.940 kb on - strand at 4291.940 kb on - strand at 4292.230 kb on + strand, within ABID97_RS20775
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,290,173 + -0.1 4,290,213 - +0.5 4,290,287 - +0.9 4,290,305 - -0.8 4,290,670 + ABID97_RS20770 0.33 -1.7 4,290,829 + ABID97_RS20770 0.45 -0.3 4,290,829 + ABID97_RS20770 0.45 -2.1 4,291,234 + ABID97_RS20770 0.75 +0.3 4,291,382 - ABID97_RS20770 0.87 -1.6 4,291,555 + -0.5 4,291,555 + +0.2 4,291,555 + -0.9 4,291,555 + +0.7 4,291,555 + -0.3 4,291,556 - -0.3 4,291,611 + -0.3 4,291,611 + -0.9 4,291,611 + +0.2 4,291,611 + -0.2 4,291,936 + +0.7 4,291,939 + -0.3 4,291,940 - -0.2 4,291,940 - -0.6 4,292,230 + ABID97_RS20775 0.22 -0.1
Or see this region's nucleotide sequence