Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20565

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS20560 and ABID97_RS20565 are separated by 13 nucleotidesABID97_RS20565 and ABID97_RS20570 are separated by 55 nucleotides ABID97_RS20560: ABID97_RS20560 - CmpA/NrtA family ABC transporter substrate-binding protein, at 4,243,683 to 4,244,927 _RS20560 ABID97_RS20565: ABID97_RS20565 - nitrate ABC transporter permease, at 4,244,941 to 4,245,873 _RS20565 ABID97_RS20570: ABID97_RS20570 - ABC transporter ATP-binding protein, at 4,245,929 to 4,246,738 _RS20570 Position (kb) 4244 4245 4246Strain fitness (log2 ratio) -2 -1 0 1 2at 4243.986 kb on + strand, within ABID97_RS20560at 4243.999 kb on - strand, within ABID97_RS20560at 4244.209 kb on - strand, within ABID97_RS20560at 4244.211 kb on + strand, within ABID97_RS20560at 4244.559 kb on + strand, within ABID97_RS20560at 4244.559 kb on + strand, within ABID97_RS20560at 4244.559 kb on + strand, within ABID97_RS20560at 4244.560 kb on - strand, within ABID97_RS20560at 4244.659 kb on - strand, within ABID97_RS20560at 4244.793 kb on + strand, within ABID97_RS20560at 4244.793 kb on + strand, within ABID97_RS20560at 4244.794 kb on - strand, within ABID97_RS20560at 4244.794 kb on - strand, within ABID97_RS20560at 4244.794 kb on - strand, within ABID97_RS20560at 4245.562 kb on + strand, within ABID97_RS20565at 4245.640 kb on + strand, within ABID97_RS20565at 4245.947 kb on + strandat 4245.948 kb on - strandat 4246.179 kb on + strand, within ABID97_RS20570at 4246.179 kb on + strand, within ABID97_RS20570at 4246.233 kb on - strand, within ABID97_RS20570

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
4,243,986 + ABID97_RS20560 0.24 -2.0
4,243,999 - ABID97_RS20560 0.25 +1.0
4,244,209 - ABID97_RS20560 0.42 -1.0
4,244,211 + ABID97_RS20560 0.42 +0.0
4,244,559 + ABID97_RS20560 0.70 +0.1
4,244,559 + ABID97_RS20560 0.70 +2.6
4,244,559 + ABID97_RS20560 0.70 +0.4
4,244,560 - ABID97_RS20560 0.70 -0.8
4,244,659 - ABID97_RS20560 0.78 +0.5
4,244,793 + ABID97_RS20560 0.89 -0.2
4,244,793 + ABID97_RS20560 0.89 -0.6
4,244,794 - ABID97_RS20560 0.89 -0.6
4,244,794 - ABID97_RS20560 0.89 -0.8
4,244,794 - ABID97_RS20560 0.89 -0.3
4,245,562 + ABID97_RS20565 0.67 -0.4
4,245,640 + ABID97_RS20565 0.75 -0.5
4,245,947 + +0.9
4,245,948 - +0.2
4,246,179 + ABID97_RS20570 0.31 -1.0
4,246,179 + ABID97_RS20570 0.31 -0.2
4,246,233 - ABID97_RS20570 0.38 -0.3

Or see this region's nucleotide sequence