Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20505 and ABID97_RS20510 are separated by 38 nucleotides ABID97_RS20510 and ABID97_RS20515 overlap by 7 nucleotides ABID97_RS20515 and ABID97_RS20520 are separated by 94 nucleotides
ABID97_RS20505: ABID97_RS20505 - preprotein translocase subunit SecG, at 4,231,806 to 4,232,222
_RS20505
ABID97_RS20510: ABID97_RS20510 - triose-phosphate isomerase, at 4,232,261 to 4,233,046
_RS20510
ABID97_RS20515: ABID97_RS20515 - NAD(P)H-quinone oxidoreductase, at 4,233,040 to 4,234,038
_RS20515
ABID97_RS20520: ABID97_RS20520 - polyribonucleotide nucleotidyltransferase, at 4,234,133 to 4,236,457
_RS20520
Position (kb) 4233
4234
4235 Strain fitness (log2 ratio) -1
0
1
2
3 at 4232.237 kb on - strand at 4232.237 kb on - strand at 4232.237 kb on - strand at 4232.241 kb on - strand at 4232.241 kb on - strand at 4233.459 kb on - strand, within ABID97_RS20515 at 4234.159 kb on - strand at 4234.579 kb on - strand, within ABID97_RS20520 at 4234.579 kb on - strand, within ABID97_RS20520
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,232,237 - +3.6 4,232,237 - +0.6 4,232,237 - -0.4 4,232,241 - -0.1 4,232,241 - +0.0 4,233,459 - ABID97_RS20515 0.42 -1.3 4,234,159 - -0.3 4,234,579 - ABID97_RS20520 0.19 +0.0 4,234,579 - ABID97_RS20520 0.19 +0.1
Or see this region's nucleotide sequence