Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20065

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20060 and ABID97_RS20065 are separated by 4 nucleotidesABID97_RS20065 and ABID97_RS20070 are separated by 67 nucleotides ABID97_RS20060: ABID97_RS20060 - hypothetical protein, at 4,145,749 to 4,147,353 _RS20060 ABID97_RS20065: ABID97_RS20065 - cysteine hydrolase family protein, at 4,147,358 to 4,147,888 _RS20065 ABID97_RS20070: ABID97_RS20070 - hypothetical protein, at 4,147,956 to 4,149,548 _RS20070 Position (kb) 4147 4148Strain fitness (log2 ratio) -1 0 1 2at 4146.430 kb on + strand, within ABID97_RS20060at 4146.430 kb on + strand, within ABID97_RS20060at 4146.451 kb on + strand, within ABID97_RS20060at 4146.560 kb on - strand, within ABID97_RS20060at 4146.596 kb on - strand, within ABID97_RS20060at 4146.601 kb on + strand, within ABID97_RS20060at 4146.646 kb on + strand, within ABID97_RS20060at 4147.234 kb on + strandat 4147.512 kb on + strand, within ABID97_RS20065at 4148.123 kb on - strand, within ABID97_RS20070at 4148.248 kb on + strand, within ABID97_RS20070at 4148.345 kb on - strand, within ABID97_RS20070at 4148.479 kb on + strand, within ABID97_RS20070

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,146,430 + ABID97_RS20060 0.42 -0.2
4,146,430 + ABID97_RS20060 0.42 -0.5
4,146,451 + ABID97_RS20060 0.44 -1.1
4,146,560 - ABID97_RS20060 0.51 +0.7
4,146,596 - ABID97_RS20060 0.53 -0.5
4,146,601 + ABID97_RS20060 0.53 +1.8
4,146,646 + ABID97_RS20060 0.56 +0.5
4,147,234 + +0.1
4,147,512 + ABID97_RS20065 0.29 -1.5
4,148,123 - ABID97_RS20070 0.10 -0.3
4,148,248 + ABID97_RS20070 0.18 +0.5
4,148,345 - ABID97_RS20070 0.24 -0.9
4,148,479 + ABID97_RS20070 0.33 -0.2

Or see this region's nucleotide sequence