Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19710 and ABID97_RS19715 are separated by 10 nucleotides ABID97_RS19715 and ABID97_RS19720 are separated by 150 nucleotides ABID97_RS19720 and ABID97_RS19725 are separated by 202 nucleotides
ABID97_RS19710: ABID97_RS19710 - 3-carboxy-cis,cis-muconate cycloisomerase, at 4,071,831 to 4,073,042
_RS19710
ABID97_RS19715: ABID97_RS19715 - shikimate dehydrogenase, at 4,073,053 to 4,073,886
_RS19715
ABID97_RS19720: ABID97_RS19720 - shikimate dehydrogenase, at 4,074,037 to 4,074,960
_RS19720
ABID97_RS19725: ABID97_RS19725 - IclR family transcriptional regulator C-terminal domain-containing protein, at 4,075,163 to 4,075,957
_RS19725
Position (kb) 4074
4075 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4073.057 kb on + strand at 4073.207 kb on + strand, within ABID97_RS19715 at 4073.208 kb on - strand, within ABID97_RS19715 at 4073.962 kb on + strand at 4073.991 kb on + strand at 4073.991 kb on + strand at 4073.991 kb on + strand at 4074.476 kb on + strand, within ABID97_RS19720 at 4074.476 kb on + strand, within ABID97_RS19720 at 4074.927 kb on - strand at 4075.016 kb on + strand at 4075.093 kb on + strand at 4075.368 kb on - strand, within ABID97_RS19725 at 4075.430 kb on + strand, within ABID97_RS19725 at 4075.508 kb on + strand, within ABID97_RS19725 at 4075.508 kb on + strand, within ABID97_RS19725 at 4075.541 kb on + strand, within ABID97_RS19725 at 4075.542 kb on - strand, within ABID97_RS19725 at 4075.707 kb on - strand, within ABID97_RS19725 at 4075.707 kb on - strand, within ABID97_RS19725
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,073,057 + -0.9 4,073,207 + ABID97_RS19715 0.18 +0.4 4,073,208 - ABID97_RS19715 0.19 -0.3 4,073,962 + +0.1 4,073,991 + +2.0 4,073,991 + +0.1 4,073,991 + +1.6 4,074,476 + ABID97_RS19720 0.48 -1.9 4,074,476 + ABID97_RS19720 0.48 -1.6 4,074,927 - -1.2 4,075,016 + -0.4 4,075,093 + +1.3 4,075,368 - ABID97_RS19725 0.26 +0.1 4,075,430 + ABID97_RS19725 0.34 -0.6 4,075,508 + ABID97_RS19725 0.43 -0.2 4,075,508 + ABID97_RS19725 0.43 -0.7 4,075,541 + ABID97_RS19725 0.48 +1.6 4,075,542 - ABID97_RS19725 0.48 -0.3 4,075,707 - ABID97_RS19725 0.68 -1.2 4,075,707 - ABID97_RS19725 0.68 +0.4
Or see this region's nucleotide sequence