Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19455 and ABID97_RS19460 overlap by 4 nucleotides ABID97_RS19460 and ABID97_RS19465 overlap by 4 nucleotides ABID97_RS19465 and ABID97_RS19470 are separated by 112 nucleotides
ABID97_RS19455: ABID97_RS19455 - VOC family protein, at 4,016,610 to 4,016,990
_RS19455
ABID97_RS19460: ABID97_RS19460 - hydroxymethylglutaryl-CoA lyase, at 4,016,987 to 4,017,970
_RS19460
ABID97_RS19465: ABID97_RS19465 - CoA transferase, at 4,017,967 to 4,019,142
_RS19465
ABID97_RS19470: ABID97_RS19470 - LysR family transcriptional regulator, at 4,019,255 to 4,020,166
_RS19470
Position (kb) 4017
4018
4019
4020 Strain fitness (log2 ratio) -1
0
1
2 at 4017.089 kb on + strand, within ABID97_RS19460 at 4017.735 kb on + strand, within ABID97_RS19460 at 4017.736 kb on - strand, within ABID97_RS19460 at 4017.736 kb on - strand, within ABID97_RS19460 at 4017.863 kb on + strand, within ABID97_RS19460 at 4017.863 kb on + strand, within ABID97_RS19460 at 4017.864 kb on - strand, within ABID97_RS19460 at 4018.161 kb on - strand, within ABID97_RS19465 at 4019.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,017,089 + ABID97_RS19460 0.10 +0.1 4,017,735 + ABID97_RS19460 0.76 -1.5 4,017,736 - ABID97_RS19460 0.76 +2.0 4,017,736 - ABID97_RS19460 0.76 -0.5 4,017,863 + ABID97_RS19460 0.89 -1.1 4,017,863 + ABID97_RS19460 0.89 -0.4 4,017,864 - ABID97_RS19460 0.89 +0.4 4,018,161 - ABID97_RS19465 0.16 -1.0 4,019,175 + -0.6
Or see this region's nucleotide sequence