Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18460 and ABID97_RS18465 overlap by 4 nucleotides ABID97_RS18465 and ABID97_RS18470 overlap by 4 nucleotides ABID97_RS18470 and ABID97_RS18475 overlap by 8 nucleotides
ABID97_RS18460: ABID97_RS18460 - site-specific integrase, at 3,806,757 to 3,808,001
_RS18460
ABID97_RS18465: ABID97_RS18465 - tyrosine-type recombinase/integrase, at 3,807,998 to 3,808,924
_RS18465
ABID97_RS18470: ABID97_RS18470 - site-specific integrase, at 3,808,921 to 3,809,550
_RS18470
ABID97_RS18475: ABID97_RS18475 - tyrosine-type recombinase/integrase, at 3,809,543 to 3,809,923
_RS18475
Position (kb)
3807
3808
3809 Strain fitness (log2 ratio)
-2
-1
0
1 at 3807.348 kb on + strand, within ABID97_RS18460 at 3807.435 kb on + strand, within ABID97_RS18460 at 3807.436 kb on - strand, within ABID97_RS18460 at 3807.676 kb on - strand, within ABID97_RS18460 at 3807.834 kb on - strand, within ABID97_RS18460 at 3808.581 kb on + strand, within ABID97_RS18465 at 3808.643 kb on + strand, within ABID97_RS18465 at 3808.844 kb on + strand at 3808.844 kb on + strand at 3809.025 kb on + strand, within ABID97_RS18470 at 3809.346 kb on + strand, within ABID97_RS18470 at 3809.347 kb on - strand, within ABID97_RS18470 at 3809.500 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,807,348 + ABID97_RS18460 0.47 -0.8 3,807,435 + ABID97_RS18460 0.54 -1.1 3,807,436 - ABID97_RS18460 0.55 -1.4 3,807,676 - ABID97_RS18460 0.74 -0.9 3,807,834 - ABID97_RS18460 0.87 +0.2 3,808,581 + ABID97_RS18465 0.63 -1.0 3,808,643 + ABID97_RS18465 0.70 +0.5 3,808,844 + +1.0 3,808,844 + +0.3 3,809,025 + ABID97_RS18470 0.17 -0.6 3,809,346 + ABID97_RS18470 0.67 +0.3 3,809,347 - ABID97_RS18470 0.68 -1.9 3,809,500 + -1.3
Or see this region's nucleotide sequence