Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13850

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13845 and ABID97_RS13850 are separated by 21 nucleotidesABID97_RS13850 and ABID97_RS13855 are separated by 3 nucleotides ABID97_RS13845: ABID97_RS13845 - hypothetical protein, at 2,874,020 to 2,877,601 _RS13845 ABID97_RS13850: ABID97_RS13850 - hypothetical protein, at 2,877,623 to 2,878,807 _RS13850 ABID97_RS13855: ABID97_RS13855 - hypothetical protein, at 2,878,811 to 2,880,226 _RS13855 Position (kb) 2877 2878 2879Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2877.104 kb on + strand, within ABID97_RS13845at 2877.105 kb on - strand, within ABID97_RS13845at 2877.423 kb on - strandat 2877.423 kb on - strandat 2877.423 kb on - strandat 2878.083 kb on - strand, within ABID97_RS13850at 2878.515 kb on - strand, within ABID97_RS13850at 2878.548 kb on - strand, within ABID97_RS13850at 2878.595 kb on + strand, within ABID97_RS13850at 2878.595 kb on + strand, within ABID97_RS13850at 2878.596 kb on - strand, within ABID97_RS13850at 2878.596 kb on - strand, within ABID97_RS13850at 2878.854 kb on - strandat 2878.893 kb on - strandat 2878.896 kb on - strandat 2878.896 kb on - strandat 2879.453 kb on + strand, within ABID97_RS13855at 2879.649 kb on - strand, within ABID97_RS13855at 2879.649 kb on - strand, within ABID97_RS13855

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,877,104 + ABID97_RS13845 0.86 -3.0
2,877,105 - ABID97_RS13845 0.86 +1.5
2,877,423 - -4.6
2,877,423 - +0.3
2,877,423 - -0.6
2,878,083 - ABID97_RS13850 0.39 -2.2
2,878,515 - ABID97_RS13850 0.75 -2.3
2,878,548 - ABID97_RS13850 0.78 -0.1
2,878,595 + ABID97_RS13850 0.82 -2.4
2,878,595 + ABID97_RS13850 0.82 -0.7
2,878,596 - ABID97_RS13850 0.82 -1.0
2,878,596 - ABID97_RS13850 0.82 +0.5
2,878,854 - +0.3
2,878,893 - -1.5
2,878,896 - -1.4
2,878,896 - +0.3
2,879,453 + ABID97_RS13855 0.45 -0.1
2,879,649 - ABID97_RS13855 0.59 -1.1
2,879,649 - ABID97_RS13855 0.59 +1.1

Or see this region's nucleotide sequence