Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13385 and ABID97_RS13390 are separated by 11 nucleotides ABID97_RS13390 and ABID97_RS13395 are separated by 28 nucleotides
ABID97_RS13385: ABID97_RS13385 - dihydrodipicolinate synthase family protein, at 2,787,528 to 2,788,547
_RS13385
ABID97_RS13390: ABID97_RS13390 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,788,559 to 2,790,034
_RS13390
ABID97_RS13395: ABID97_RS13395 - tripartite tricarboxylate transporter substrate-binding protein, at 2,790,063 to 2,791,031
_RS13395
Position (kb)
2788
2789
2790
2791 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 2787.682 kb on - strand, within ABID97_RS13385 at 2787.918 kb on + strand, within ABID97_RS13385 at 2787.919 kb on - strand, within ABID97_RS13385 at 2788.230 kb on + strand, within ABID97_RS13385 at 2788.231 kb on - strand, within ABID97_RS13385 at 2788.522 kb on - strand at 2788.646 kb on + strand at 2788.647 kb on - strand at 2789.823 kb on - strand, within ABID97_RS13390 at 2790.355 kb on - strand, within ABID97_RS13395 at 2790.435 kb on + strand, within ABID97_RS13395 at 2790.436 kb on - strand, within ABID97_RS13395 at 2790.467 kb on - strand, within ABID97_RS13395 at 2790.467 kb on - strand, within ABID97_RS13395 at 2790.499 kb on - strand, within ABID97_RS13395
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,787,682 - ABID97_RS13385 0.15 -0.5 2,787,918 + ABID97_RS13385 0.38 -1.2 2,787,919 - ABID97_RS13385 0.38 -0.8 2,788,230 + ABID97_RS13385 0.69 +0.2 2,788,231 - ABID97_RS13385 0.69 +0.9 2,788,522 - +7.1 2,788,646 + -2.0 2,788,647 - -0.7 2,789,823 - ABID97_RS13390 0.86 -1.1 2,790,355 - ABID97_RS13395 0.30 +1.0 2,790,435 + ABID97_RS13395 0.38 +0.1 2,790,436 - ABID97_RS13395 0.38 -0.6 2,790,467 - ABID97_RS13395 0.42 -0.2 2,790,467 - ABID97_RS13395 0.42 -0.0 2,790,499 - ABID97_RS13395 0.45 -0.1
Or see this region's nucleotide sequence