Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13300

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13295 and ABID97_RS13300 overlap by 4 nucleotidesABID97_RS13300 and ABID97_RS13305 are separated by 18 nucleotidesABID97_RS13305 and ABID97_RS13310 are separated by 67 nucleotides ABID97_RS13295: ABID97_RS13295 - amino acid ABC transporter permease, at 2,769,820 to 2,770,992 _RS13295 ABID97_RS13300: ABID97_RS13300 - amino acid ABC transporter permease, at 2,770,989 to 2,772,080 _RS13300 ABID97_RS13305: ABID97_RS13305 - amino acid ABC transporter ATP-binding protein, at 2,772,099 to 2,772,839 _RS13305 ABID97_RS13310: ABID97_RS13310 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 2,772,907 to 2,774,070 _RS13310 Position (kb) 2770 2771 2772 2773Strain fitness (log2 ratio) -3 -2 -1 0 1at 2770.247 kb on - strand, within ABID97_RS13295at 2770.310 kb on - strand, within ABID97_RS13295at 2770.310 kb on - strand, within ABID97_RS13295at 2770.310 kb on - strand, within ABID97_RS13295at 2770.960 kb on + strandat 2771.267 kb on + strand, within ABID97_RS13300at 2772.016 kb on - strandat 2772.037 kb on + strandat 2772.045 kb on + strandat 2772.507 kb on + strand, within ABID97_RS13305at 2772.837 kb on + strandat 2772.902 kb on + strandat 2773.003 kb on + strandat 2773.004 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,770,247 - ABID97_RS13295 0.36 +0.4
2,770,310 - ABID97_RS13295 0.42 -2.8
2,770,310 - ABID97_RS13295 0.42 -0.0
2,770,310 - ABID97_RS13295 0.42 -0.9
2,770,960 + +0.5
2,771,267 + ABID97_RS13300 0.25 -1.2
2,772,016 - -0.3
2,772,037 + +1.1
2,772,045 + +1.1
2,772,507 + ABID97_RS13305 0.55 -1.0
2,772,837 + +0.5
2,772,902 + -0.5
2,773,003 + -0.3
2,773,004 - +0.2

Or see this region's nucleotide sequence