Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13295 and ABID97_RS13300 overlap by 4 nucleotides ABID97_RS13300 and ABID97_RS13305 are separated by 18 nucleotides ABID97_RS13305 and ABID97_RS13310 are separated by 67 nucleotides
ABID97_RS13295: ABID97_RS13295 - amino acid ABC transporter permease, at 2,769,820 to 2,770,992
_RS13295
ABID97_RS13300: ABID97_RS13300 - amino acid ABC transporter permease, at 2,770,989 to 2,772,080
_RS13300
ABID97_RS13305: ABID97_RS13305 - amino acid ABC transporter ATP-binding protein, at 2,772,099 to 2,772,839
_RS13305
ABID97_RS13310: ABID97_RS13310 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 2,772,907 to 2,774,070
_RS13310
Position (kb)
2770
2771
2772
2773 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2770.247 kb on - strand, within ABID97_RS13295 at 2770.310 kb on - strand, within ABID97_RS13295 at 2770.310 kb on - strand, within ABID97_RS13295 at 2770.310 kb on - strand, within ABID97_RS13295 at 2770.960 kb on + strand at 2771.267 kb on + strand, within ABID97_RS13300 at 2772.016 kb on - strand at 2772.037 kb on + strand at 2772.045 kb on + strand at 2772.507 kb on + strand, within ABID97_RS13305 at 2772.837 kb on + strand at 2772.902 kb on + strand at 2773.003 kb on + strand at 2773.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,770,247 - ABID97_RS13295 0.36 +0.4 2,770,310 - ABID97_RS13295 0.42 -2.8 2,770,310 - ABID97_RS13295 0.42 -0.0 2,770,310 - ABID97_RS13295 0.42 -0.9 2,770,960 + +0.5 2,771,267 + ABID97_RS13300 0.25 -1.2 2,772,016 - -0.3 2,772,037 + +1.1 2,772,045 + +1.1 2,772,507 + ABID97_RS13305 0.55 -1.0 2,772,837 + +0.5 2,772,902 + -0.5 2,773,003 + -0.3 2,773,004 - +0.2
Or see this region's nucleotide sequence