Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10115 and ABID97_RS10120 are separated by 84 nucleotides ABID97_RS10120 and ABID97_RS10125 are separated by 15 nucleotides
ABID97_RS10115: ABID97_RS10115 - adenosine deaminase, at 2,101,028 to 2,102,119
_RS10115
ABID97_RS10120: ABID97_RS10120 - LysR family transcriptional regulator, at 2,102,204 to 2,103,163
_RS10120
ABID97_RS10125: ABID97_RS10125 - polyhydroxyalkanoate depolymerase, at 2,103,179 to 2,104,396
_RS10125
Position (kb)
2102
2103
2104 Strain fitness (log2 ratio)
-1
0
1 at 2101.344 kb on + strand, within ABID97_RS10115 at 2101.345 kb on - strand, within ABID97_RS10115 at 2101.851 kb on + strand, within ABID97_RS10115 at 2101.951 kb on + strand, within ABID97_RS10115 at 2101.952 kb on - strand, within ABID97_RS10115 at 2101.952 kb on - strand, within ABID97_RS10115 at 2101.953 kb on + strand, within ABID97_RS10115 at 2101.954 kb on - strand, within ABID97_RS10115 at 2102.131 kb on + strand at 2102.132 kb on - strand at 2102.168 kb on + strand at 2102.877 kb on - strand, within ABID97_RS10120 at 2102.903 kb on + strand, within ABID97_RS10120 at 2103.225 kb on + strand at 2103.419 kb on + strand, within ABID97_RS10125 at 2103.462 kb on + strand, within ABID97_RS10125 at 2103.462 kb on + strand, within ABID97_RS10125 at 2103.463 kb on - strand, within ABID97_RS10125 at 2103.495 kb on + strand, within ABID97_RS10125 at 2103.495 kb on + strand, within ABID97_RS10125 at 2103.496 kb on - strand, within ABID97_RS10125 at 2103.528 kb on + strand, within ABID97_RS10125 at 2103.538 kb on - strand, within ABID97_RS10125 at 2104.014 kb on + strand, within ABID97_RS10125 at 2104.015 kb on - strand, within ABID97_RS10125
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,101,344 + ABID97_RS10115 0.29 -1.5 2,101,345 - ABID97_RS10115 0.29 -0.2 2,101,851 + ABID97_RS10115 0.75 -0.4 2,101,951 + ABID97_RS10115 0.85 +0.5 2,101,952 - ABID97_RS10115 0.85 -0.6 2,101,952 - ABID97_RS10115 0.85 -0.5 2,101,953 + ABID97_RS10115 0.85 -0.7 2,101,954 - ABID97_RS10115 0.85 -1.0 2,102,131 + +1.1 2,102,132 - -0.2 2,102,168 + +0.0 2,102,877 - ABID97_RS10120 0.70 -0.9 2,102,903 + ABID97_RS10120 0.73 -0.4 2,103,225 + -0.4 2,103,419 + ABID97_RS10125 0.20 +0.0 2,103,462 + ABID97_RS10125 0.23 -0.1 2,103,462 + ABID97_RS10125 0.23 -0.4 2,103,463 - ABID97_RS10125 0.23 -0.0 2,103,495 + ABID97_RS10125 0.26 +0.0 2,103,495 + ABID97_RS10125 0.26 +0.6 2,103,496 - ABID97_RS10125 0.26 -0.5 2,103,528 + ABID97_RS10125 0.29 -0.1 2,103,538 - ABID97_RS10125 0.29 -0.4 2,104,014 + ABID97_RS10125 0.69 -0.1 2,104,015 - ABID97_RS10125 0.69 -0.2
Or see this region's nucleotide sequence