Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09665

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09655 and ABID97_RS09660 are separated by 289 nucleotidesABID97_RS09660 and ABID97_RS09665 are separated by 6 nucleotidesABID97_RS09665 and ABID97_RS09670 are separated by 465 nucleotidesABID97_RS09670 and ABID97_RS09675 are separated by 202 nucleotides ABID97_RS09655: ABID97_RS09655 - hypothetical protein, at 2,020,394 to 2,021,101 _RS09655 ABID97_RS09660: ABID97_RS09660 - tRNA-Asn, at 2,021,391 to 2,021,466 _RS09660 ABID97_RS09665: ABID97_RS09665 - tRNA-Met, at 2,021,473 to 2,021,548 _RS09665 ABID97_RS09670: ABID97_RS09670 - hypothetical protein, at 2,022,014 to 2,022,199 _RS09670 ABID97_RS09675: ABID97_RS09675 - HNH endonuclease signature motif containing protein, at 2,022,402 to 2,022,581 _RS09675 Position (kb) 2021 2022Strain fitness (log2 ratio) -2 -1 0 1 2at 2020.731 kb on - strand, within ABID97_RS09655at 2021.099 kb on + strandat 2021.104 kb on + strandat 2021.104 kb on + strandat 2021.105 kb on - strandat 2021.315 kb on + strandat 2021.315 kb on + strandat 2021.316 kb on - strandat 2021.316 kb on - strandat 2021.316 kb on - strandat 2021.381 kb on - strandat 2021.399 kb on - strand, within ABID97_RS09660at 2021.481 kb on - strand, within ABID97_RS09665at 2021.481 kb on - strand, within ABID97_RS09665at 2021.492 kb on + strand, within ABID97_RS09665at 2021.591 kb on - strandat 2021.670 kb on + strandat 2021.671 kb on - strandat 2021.671 kb on - strandat 2021.671 kb on - strandat 2021.671 kb on - strandat 2021.671 kb on - strandat 2021.671 kb on - strandat 2021.725 kb on + strandat 2021.725 kb on + strandat 2021.726 kb on - strandat 2021.848 kb on + strandat 2022.064 kb on - strand, within ABID97_RS09670at 2022.496 kb on + strand, within ABID97_RS09675at 2022.497 kb on - strand, within ABID97_RS09675at 2022.497 kb on - strand, within ABID97_RS09675at 2022.497 kb on - strand, within ABID97_RS09675

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,020,731 - ABID97_RS09655 0.48 -0.1
2,021,099 + -1.1
2,021,104 + -0.2
2,021,104 + +0.2
2,021,105 - -0.2
2,021,315 + +0.2
2,021,315 + -0.3
2,021,316 - +1.1
2,021,316 - +0.1
2,021,316 - +1.0
2,021,381 - +0.8
2,021,399 - ABID97_RS09660 0.11 -1.2
2,021,481 - ABID97_RS09665 0.11 -1.3
2,021,481 - ABID97_RS09665 0.11 -0.8
2,021,492 + ABID97_RS09665 0.25 +1.2
2,021,591 - -0.5
2,021,670 + +0.5
2,021,671 - +1.1
2,021,671 - +0.4
2,021,671 - -0.7
2,021,671 - +0.9
2,021,671 - -0.1
2,021,671 - -0.1
2,021,725 + +1.7
2,021,725 + -0.4
2,021,726 - +0.2
2,021,848 + +2.5
2,022,064 - ABID97_RS09670 0.27 -0.3
2,022,496 + ABID97_RS09675 0.52 +0.9
2,022,497 - ABID97_RS09675 0.53 +0.4
2,022,497 - ABID97_RS09675 0.53 -2.3
2,022,497 - ABID97_RS09675 0.53 +0.1

Or see this region's nucleotide sequence