Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08955

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08945 and ABID97_RS08950 are separated by 144 nucleotidesABID97_RS08950 and ABID97_RS08955 are separated by 43 nucleotidesABID97_RS08955 and ABID97_RS08960 are separated by 129 nucleotidesABID97_RS08960 and ABID97_RS08965 are separated by 128 nucleotides ABID97_RS08945: ABID97_RS08945 - type VI secretion system ATPase TssH, at 1,873,105 to 1,875,819 _RS08945 ABID97_RS08950: ABID97_RS08950 - type VI secretion system contractile sheath small subunit, at 1,875,964 to 1,876,500 _RS08950 ABID97_RS08955: ABID97_RS08955 - type VI secretion system contractile sheath large subunit, at 1,876,544 to 1,878,040 _RS08955 ABID97_RS08960: ABID97_RS08960 - type VI secretion system tube protein Hcp, at 1,878,170 to 1,878,655 _RS08960 ABID97_RS08965: ABID97_RS08965 - type VI secretion system baseplate subunit TssK, at 1,878,784 to 1,880,139 _RS08965 Position (kb) 1876 1877 1878 1879Strain fitness (log2 ratio) -2 -1 0 1at 1875.811 kb on + strandat 1875.812 kb on - strandat 1876.043 kb on - strand, within ABID97_RS08950at 1876.043 kb on - strand, within ABID97_RS08950at 1876.363 kb on + strand, within ABID97_RS08950at 1876.364 kb on - strand, within ABID97_RS08950at 1876.364 kb on - strand, within ABID97_RS08950at 1876.365 kb on + strand, within ABID97_RS08950at 1876.539 kb on + strandat 1876.540 kb on - strandat 1876.731 kb on - strand, within ABID97_RS08955at 1876.902 kb on + strand, within ABID97_RS08955at 1876.982 kb on + strand, within ABID97_RS08955at 1876.983 kb on - strand, within ABID97_RS08955at 1877.018 kb on + strand, within ABID97_RS08955at 1877.018 kb on + strand, within ABID97_RS08955at 1877.040 kb on - strand, within ABID97_RS08955at 1877.390 kb on + strand, within ABID97_RS08955at 1877.390 kb on + strand, within ABID97_RS08955at 1877.495 kb on - strand, within ABID97_RS08955at 1877.667 kb on - strand, within ABID97_RS08955at 1877.716 kb on + strand, within ABID97_RS08955at 1877.939 kb on + strandat 1878.169 kb on + strandat 1878.383 kb on + strand, within ABID97_RS08960at 1878.907 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,875,811 + +0.6
1,875,812 - +0.3
1,876,043 - ABID97_RS08950 0.15 -0.5
1,876,043 - ABID97_RS08950 0.15 +1.3
1,876,363 + ABID97_RS08950 0.74 +0.1
1,876,364 - ABID97_RS08950 0.74 +0.7
1,876,364 - ABID97_RS08950 0.74 +0.1
1,876,365 + ABID97_RS08950 0.75 +0.8
1,876,539 + -1.1
1,876,540 - +0.2
1,876,731 - ABID97_RS08955 0.12 -0.3
1,876,902 + ABID97_RS08955 0.24 -0.3
1,876,982 + ABID97_RS08955 0.29 +0.5
1,876,983 - ABID97_RS08955 0.29 +0.0
1,877,018 + ABID97_RS08955 0.32 +0.9
1,877,018 + ABID97_RS08955 0.32 -0.2
1,877,040 - ABID97_RS08955 0.33 +0.9
1,877,390 + ABID97_RS08955 0.57 +0.8
1,877,390 + ABID97_RS08955 0.57 +0.4
1,877,495 - ABID97_RS08955 0.64 +0.6
1,877,667 - ABID97_RS08955 0.75 -0.2
1,877,716 + ABID97_RS08955 0.78 +1.5
1,877,939 + +1.0
1,878,169 + +0.1
1,878,383 + ABID97_RS08960 0.44 -1.0
1,878,907 + -2.2

Or see this region's nucleotide sequence